ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl53g12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GLMS_TREPA (O83833) Glucosamine--fructose-6-phosphate aminotrans... 30 1.8
2PHSA_SALTY (P37600) Thiosulfate reductase precursor (EC 1.-.-.-) 28 5.3
3NPY6R_RABIT (P79217) Neuropeptide Y receptor type 6 (NPY6-R) 28 6.9
4LSHB_HORSE (P08751) Lutropin/choriogonadotropin beta chain precu... 28 6.9
5AMYG_NEUCR (P14804) Glucoamylase precursor (EC 3.2.1.3) (Glucan ... 28 6.9
6M4A8A_MOUSE (Q99N10) Membrane-spanning 4-domains subfamily A mem... 27 9.0
7COMA_CONMA (Q9TWL9) Conodipine-M alpha chain (EC 3.1.1.4) 27 9.0

>GLMS_TREPA (O83833) Glucosamine--fructose-6-phosphate aminotransferase|
           [isomerizing] (EC 2.6.1.16) (Hexosephosphate
           aminotransferase) (D-fructose-6-phosphate
           amidotransferase) (GFAT)
           (L-glutamine-D-fructose-6-phosphate amidotransferase)
           (Glucosamine-6-ph
          Length = 634

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -1

Query: 274 CN*LQSCLVARMDRHATCTHSGGHVGVELVVSFDLKLICTCI 149
           CN  +S LV   D     TH+G  +GV    SF  +L+C  +
Sbjct: 387 CNGARSTLVRESDA-VLLTHAGSEIGVASTKSFTTQLVCLLV 427



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>PHSA_SALTY (P37600) Thiosulfate reductase precursor (EC 1.-.-.-)|
          Length = 758

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 117 SSKDVTFSTHLIHVQISLRSKDTTSSTPTCP 209
           SSK  + S+HL H+  +  S +T +   TCP
Sbjct: 145 SSKSGSLSSHLFHLATAFGSPNTFTHASTCP 175



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>NPY6R_RABIT (P79217) Neuropeptide Y receptor type 6 (NPY6-R)|
          Length = 371

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -3

Query: 146 VCTESYIFRTDTALSFTSTVCLAFFVDLRSLIFCGVYVSSC 24
           VC E +  +T+  L  TS + L +FV L  +  C + +  C
Sbjct: 195 VCVEHWPSKTNQLLYSTSLIMLQYFVPLGFMFICYLKIVIC 235



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>LSHB_HORSE (P08751) Lutropin/choriogonadotropin beta chain precursor|
           (LSH-B/CG-B) (Lutenizing hormone beta subunit)
          Length = 169

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -1

Query: 235 RHATCTHSGGHVGVELVVSFDLKLICTCIKCVLKVTSLELIR 110
           R A+    G   GV+ +VSF + L C C  C +K T   + R
Sbjct: 83  RFASIRLPGCPPGVDPMVSFPVALSCHCGPCQIKTTDCGVFR 124



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>AMYG_NEUCR (P14804) Glucoamylase precursor (EC 3.2.1.3) (Glucan|
           1,4-alpha-glucosidase) (1,4-alpha-D-glucan
           glucohydrolase)
          Length = 626

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = -3

Query: 131 YIFRTDTALSFTSTVCLAFFVDLRSLIFCGVYVSSCAT 18
           Y+++   +++ TST  LAFF DL   +  G Y SS +T
Sbjct: 368 YVWKKQGSITVTST-SLAFFKDLVPSVSTGTYSSSSST 404



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>M4A8A_MOUSE (Q99N10) Membrane-spanning 4-domains subfamily A member 8A (CD20|
           antigen-like 5) (Fragment)
          Length = 287

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +2

Query: 194 NSYMSTRVGTSGMPVHSGNQTRLQLVTALVDGIKMFLDEPPA 319
           NSY         MP++  NQ ++ +++  + G+   + EPPA
Sbjct: 56  NSYPVVPGTVPQMPIYPSNQPQVHVISGHLPGLVPAMTEPPA 97



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>COMA_CONMA (Q9TWL9) Conodipine-M alpha chain (EC 3.1.1.4)|
          Length = 77

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -1

Query: 262 QSCLVARMDRHATCTHSGGHVG 197
           Q   +A  DRH TC H G H G
Sbjct: 26  QKXFLAACDRHDTCYHCGKHFG 47


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,884,433
Number of Sequences: 219361
Number of extensions: 1239149
Number of successful extensions: 3262
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3262
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 1375720320
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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