ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl53g12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC102655.7| Mus musculus chromosome 19, clone RP23-13N2, comp... 44 0.34
2ref|NM_105369.1| Arabidopsis thaliana glycerophosphodiester phos... 40 5.3
3gb|AC007152.9| Arabidopsis thaliana chromosome I BAC F1O19 genom... 40 5.3
4emb|Z93397.1|CEZC482 Caenorhabditis elegans Cosmid ZC482, comple... 40 5.3
5emb|AL139818.15| Human DNA sequence from clone RP11-311B18 on ch... 40 5.3
6dbj|AP006861.1| Chlamydophila felis Fe/C-56 DNA, complete genome 40 5.3
7gb|AC107976.4| Homo sapiens chromosome 15, clone CTD-2576F9, com... 40 5.3
8gb|AC090943.3| Homo sapiens chromosome 3 clone RP11-22O15 map 3p... 40 5.3
9dbj|AK082987.1| Mus musculus 12 days embryo spinal cord cDNA, RI... 40 5.3
10gb|AC132220.10| Homo sapiens chromosome 15, clone RP11-1142D4, c... 40 5.3
11gb|AC091291.2| Homo sapiens chromosome 3 clone RP11-654A18 map 3... 40 5.3
12emb|AL953916.14| Zebrafish DNA sequence from clone CH211-246I7 i... 40 5.3
13emb|CR556696.19| Zebrafish DNA sequence from clone CH211-80J13 i... 40 5.3
14gb|AY449460.1| Oikopleura dioica clone BACOIKO004 7xk22, complet... 40 5.3
15gb|AC124225.13| Mus musculus chromosome 16, clone RP23-83P23, co... 40 5.3
16dbj|AP006372.1| Lotus japonicus genomic DNA, chromosome 1, clone... 40 5.3
17dbj|AP004546.1| Lotus japonicus genomic DNA, chromosome 1, clone... 40 5.3
18emb|AL844859.5| Mouse DNA sequence from clone RP23-263O20 on chr... 40 5.3 
>gb|AC102655.7| Mus musculus chromosome 19, clone RP23-13N2, complete sequence
          Length = 202294

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 289   aataaaaatgtttttggatgaa 310
             ||||||||||||||||||||||
Sbjct: 56757 aataaaaatgtttttggatgaa 56736
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>ref|NM_105369.1| Arabidopsis thaliana glycerophosphodiester phosphodiesterase/ kinase
            AT1G66980 mRNA, complete cds
          Length = 3512

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 291  taaaaatgtttttggatgaa 310
            ||||||||||||||||||||
Sbjct: 3459 taaaaatgtttttggatgaa 3440
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>gb|AC007152.9| Arabidopsis thaliana chromosome I BAC F1O19 genomic sequence, complete
             sequence
          Length = 90387

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 291   taaaaatgtttttggatgaa 310
             ||||||||||||||||||||
Sbjct: 27065 taaaaatgtttttggatgaa 27084
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>emb|Z93397.1|CEZC482 Caenorhabditis elegans Cosmid ZC482, complete sequence
          Length = 36302

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 38    aaactccacaaaaaattaac 57
             ||||||||||||||||||||
Sbjct: 20467 aaactccacaaaaaattaac 20448
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>emb|AL139818.15| Human DNA sequence from clone RP11-311B18 on chromosome 10 Contains a
             novel gene, complete sequence
          Length = 103124

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 148   tgatacatgtacaaataagc 167
             ||||||||||||||||||||
Sbjct: 58386 tgatacatgtacaaataagc 58405
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>dbj|AP006861.1| Chlamydophila felis Fe/C-56 DNA, complete genome
          Length = 1166239

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 41     ctccacaaaaaattaacgag 60
              ||||||||||||||||||||
Sbjct: 718474 ctccacaaaaaattaacgag 718493
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>gb|AC107976.4| Homo sapiens chromosome 15, clone CTD-2576F9, complete sequence
          Length = 131548

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 116   cagttctaaagatgtaactt 135
             ||||||||||||||||||||
Sbjct: 64502 cagttctaaagatgtaactt 64521
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>gb|AC090943.3| Homo sapiens chromosome 3 clone RP11-22O15 map 3p, complete sequence
          Length = 162949

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 321    atgccgaggtgtaagagcat 340
              ||||||||||||||||||||
Sbjct: 107859 atgccgaggtgtaagagcat 107878
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>dbj|AK082987.1| Mus musculus 12 days embryo spinal cord cDNA, RIKEN full-length
            enriched library, clone:C530029E03
            product:unclassifiable, full insert sequence
          Length = 2998

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 154  atgtacaaataagcttaagg 173
            ||||||||||||||||||||
Sbjct: 1051 atgtacaaataagcttaagg 1070
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>gb|AC132220.10| Homo sapiens chromosome 15, clone RP11-1142D4, complete sequence
          Length = 162101

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 116   cagttctaaagatgtaactt 135
             ||||||||||||||||||||
Sbjct: 67063 cagttctaaagatgtaactt 67044
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>gb|AC091291.2| Homo sapiens chromosome 3 clone RP11-654A18 map 3p, complete sequence
          Length = 184579

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 321   atgccgaggtgtaagagcat 340
             ||||||||||||||||||||
Sbjct: 65374 atgccgaggtgtaagagcat 65393
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>emb|AL953916.14| Zebrafish DNA sequence from clone CH211-246I7 in linkage group 12,
              complete sequence
          Length = 177468

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 291    taaaaatgtttttggatgaa 310
              ||||||||||||||||||||
Sbjct: 161862 taaaaatgtttttggatgaa 161843
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>emb|CR556696.19| Zebrafish DNA sequence from clone CH211-80J13 in linkage group 20,
             complete sequence
          Length = 130645

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 90    tgtgctagtgaatgacaacg 109
             ||||||||||||||||||||
Sbjct: 71131 tgtgctagtgaatgacaacg 71112
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>gb|AY449460.1| Oikopleura dioica clone BACOIKO004 7xk22, complete sequence
          Length = 131867

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 299   tttttggatgaaccaccagc 318
             ||||||||||||||||||||
Sbjct: 64488 tttttggatgaaccaccagc 64507
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>gb|AC124225.13| Mus musculus chromosome 16, clone RP23-83P23, complete sequence
          Length = 157891

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 154   atgtacaaataagcttaagg 173
             ||||||||||||||||||||
Sbjct: 89609 atgtacaaataagcttaagg 89590
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>dbj|AP006372.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT36C05, TM0215b,
             complete sequence
          Length = 84914

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 84    acatactgtgctagtgaatgacaa 107
             |||||||||| |||||||||||||
Sbjct: 74278 acatactgtgttagtgaatgacaa 74255
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>dbj|AP004546.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT43N05, TM0178,
             complete sequence
          Length = 97268

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 84    acatactgtgctagtgaatgacaa 107
             |||||||||| |||||||||||||
Sbjct: 40708 acatactgtgttagtgaatgacaa 40685
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>emb|AL844859.5| Mouse DNA sequence from clone RP23-263O20 on chromosome 2, complete
             sequence
          Length = 151493

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 289   aataaaaatgtttttggatg 308
             ||||||||||||||||||||
Sbjct: 61609 aataaaaatgtttttggatg 61590


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,841,913
Number of Sequences: 3902068
Number of extensions: 3841913
Number of successful extensions: 67168
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 67138
Number of HSP's gapped (non-prelim): 30
length of query: 394
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 372
effective length of database: 17,147,199,772
effective search space: 6378758315184
effective search space used: 6378758315184
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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