ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl53g11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1HSP7C_TRYBB (P20030) Heat shock cognate HSP70 protein 28 8.2
2CASK_HORSE (P82187) Kappa-casein precursor (Kappa-CN) 28 8.2

>HSP7C_TRYBB (P20030) Heat shock cognate HSP70 protein|
          Length = 676

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = +2

Query: 32  TLHGSSS*QSGTMYAVWFLWQRNRIELLQEEPRNGNNSPTIATIN 166
           T  G+     GT Y+   +WQ  R+E++  +  N      +A +N
Sbjct: 2   TYEGAIGIDLGTTYSCVGVWQNERVEIIANDQGNRTTPSYVAFVN 46



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>CASK_HORSE (P82187) Kappa-casein precursor (Kappa-CN)|
          Length = 185

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -3

Query: 174 AYELMVAIVGELLPFLGSSCSNSILFLCHKN 82
           ++ L+V I+   LPFLG+   N     CHKN
Sbjct: 3   SFFLVVNILALTLPFLGAEVQNQEQPTCHKN 33


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,594,252
Number of Sequences: 219361
Number of extensions: 597326
Number of successful extensions: 1267
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1267
length of database: 80,573,946
effective HSP length: 56
effective length of database: 68,289,730
effective search space used: 1638953520
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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