>gb|AC147570.3| Homo sapiens BAC clone RP11-1176F21 from UL, complete sequence
          Length = 191237

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 9    cacaccaaaaacaaactgatag 30
            ||||||||||||||||||||||
Sbjct: 2226 cacaccaaaaacaaactgatag 2247

>gb|AC004527.2|AC004527 Homo sapiens chromosome 21, Neurofibromatosis 1 (NF1) related locus,
             complete sequence
          Length = 131971

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 9     cacaccaaaaacaaactgatag 30
             ||||||||||||||||||||||
Sbjct: 94121 cacaccaaaaacaaactgatag 94100

>dbj|AP001660.1| Homo sapiens genomic DNA, chromosome 21q, section 4/105
          Length = 340000

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 9     cacaccaaaaacaaactgatag 30
             ||||||||||||||||||||||
Sbjct: 17742 cacaccaaaaacaaactgatag 17721

>gb|AY898799.1| Homo sapiens NF1-ch21 pseudogene, complete sequence
          Length = 10837

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 9    cacaccaaaaacaaactgatag 30
            ||||||||||||||||||||||
Sbjct: 2583 cacaccaaaaacaaactgatag 2562

>gb|AY898798.1| Homo sapiens NF1-ch18 pseudogene, complete sequence
          Length = 10834

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 9    cacaccaaaaacaaactgatag 30
            ||||||||||||||||||||||
Sbjct: 2577 cacaccaaaaacaaactgatag 2556

>dbj|AP001634.1| Homo sapiens genomic DNA, chromosome 21q11.1 clone:B585O4, D21S290-LL56
             region, complete sequence
          Length = 71829

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 9     cacaccaaaaacaaactgatag 30
             ||||||||||||||||||||||
Sbjct: 33976 cacaccaaaaacaaactgatag 33955

>dbj|AP001004.5| Homo sapiens genomic DNA, chromosome 18 clone:RP11-681B3, complete
             sequence
          Length = 182424

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 9     cacaccaaaaacaaactgatag 30
             ||||||||||||||||||||||
Sbjct: 97775 cacaccaaaaacaaactgatag 97796

>gb|AC160562.2| Mus musculus BAC clone RP23-9A12 from chromosome 9, complete sequence
          Length = 241034

 Score = 42.1 bits (21), Expect = 0.79
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 84    ttttatggcaaaggaatagga 104
             |||||||||||||||||||||
Sbjct: 20440 ttttatggcaaaggaatagga 20420

>gb|AC160394.2| Mus musculus BAC clone RP23-116C19 from chromosome 9, complete sequence
          Length = 201200

 Score = 42.1 bits (21), Expect = 0.79
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 84     ttttatggcaaaggaatagga 104
              |||||||||||||||||||||
Sbjct: 177315 ttttatggcaaaggaatagga 177295

>gb|AC113548.22| Mus musculus chromosome 9, clone RP23-268F15, complete sequence
          Length = 195273

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 139   caactctcccactatagcaa 158
             ||||||||||||||||||||
Sbjct: 84114 caactctcccactatagcaa 84095

>gb|AC100600.22| Mus musculus chromosome 9, clone RP23-157H17, complete sequence
          Length = 225538

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 73     tgcggtgtggtttttatggc 92
              ||||||||||||||||||||
Sbjct: 197878 tgcggtgtggtttttatggc 197859

>gb|AC145592.3| Mus musculus BAC clone RP24-335F16 from chromosome y, complete sequence
          Length = 167384

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 139    caactctcccactatagcaa 158
              ||||||||||||||||||||
Sbjct: 104096 caactctcccactatagcaa 104115

>gb|AC124399.4| Mus musculus BAC clone RP24-351I17 from chromosome 10, complete sequence
          Length = 179668

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 140    aactctcccactatagcaaccatc 163
              |||||||||| |||||||||||||
Sbjct: 144936 aactctcccagtatagcaaccatc 144959

>gb|AC121871.3| Mus musculus BAC clone RP24-121J1 from chromosome 10, complete sequence
          Length = 214405

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 140    aactctcccactatagcaaccatc 163
              |||||||||| |||||||||||||
Sbjct: 198796 aactctcccagtatagcaaccatc 198773

>gb|BC044046.1| Xenopus laevis similar to growth arrest and DNA-damage-inducible,
           alpha, mRNA (cDNA clone MGC:53491 IMAGE:5572415),
           complete cds
          Length = 1211

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 86  ttatggcaaaggaataggat 105
           ||||||||||||||||||||
Sbjct: 959 ttatggcaaaggaataggat 978

>gb|AC126782.23| Medicago truncatula clone mth2-14p11, complete sequence
          Length = 135659

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 68    atgtatgcggtgtggttttt 87
             ||||||||||||||||||||
Sbjct: 51563 atgtatgcggtgtggttttt 51582

>emb|AL121919.20|HSJ492J12 Human DNA sequence from clone RP3-492J12 on chromosome 20 Contains the
             C20orf174 gene for chromosome 20 open reading frame 174
             and a CpG island, complete sequence
          Length = 129942

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 115   acaggaagaaccaaggaatg 134
             ||||||||||||||||||||
Sbjct: 95346 acaggaagaaccaaggaatg 95327

>gb|AC124157.4| Equus caballus clone CH241-37P10, complete sequence
          Length = 193986

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 90    ggcaaaggaataggatagaa 109
             ||||||||||||||||||||
Sbjct: 95592 ggcaaaggaataggatagaa 95611

>gb|DQ096908.1| Xenopus laevis comp35 mRNA, complete sequence
          Length = 1151

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 86  ttatggcaaaggaataggat 105
           ||||||||||||||||||||
Sbjct: 961 ttatggcaaaggaataggat 980

>gb|AC011399.6| Homo sapiens chromosome 5 clone CTB-25P15, complete sequence
          Length = 174158

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 90    ggcaaaggaataggatagaa 109
             ||||||||||||||||||||
Sbjct: 72880 ggcaaaggaataggatagaa 72861

>gb|AC107943.4| Homo sapiens chromosome 8, clone RP11-11I1, complete sequence
          Length = 195110

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 192    atgcatcatcataaccagac 211
              ||||||||||||||||||||
Sbjct: 143504 atgcatcatcataaccagac 143485

>gb|AC011835.8| Homo sapiens chromosome 8, clone RP11-143D15, complete sequence
          Length = 182151

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 192    atgcatcatcataaccagac 211
              ||||||||||||||||||||
Sbjct: 175085 atgcatcatcataaccagac 175104

>gb|AC016065.14| Homo sapiens chromosome 8, clone RP11-115C21, complete sequence
          Length = 185463

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 192    atgcatcatcataaccagac 211
              ||||||||||||||||||||
Sbjct: 149691 atgcatcatcataaccagac 149710

>gb|AC152502.5| Mus musculus BAC clone RP23-415D12 from chromosome 16, complete
             sequence
          Length = 180876

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 121   agaaccaaggaatggcaaca 140
             ||||||||||||||||||||
Sbjct: 66984 agaaccaaggaatggcaaca 66965

>emb|BX470215.5| Mouse DNA sequence from clone RP24-558L5 on chromosome X, complete
             sequence
          Length = 137502

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 139   caactctcccactatagcaa 158
             ||||||||||||||||||||
Sbjct: 24102 caactctcccactatagcaa 24083

>gb|AC130533.2| Mus musculus BAC clone RP23-211B19 from 8, complete sequence
          Length = 203431

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 139   caactctcccactatagcaa 158
             ||||||||||||||||||||
Sbjct: 59775 caactctcccactatagcaa 59794

>gb|DP000020.1| Equus caballus target 1 genomic scaffold
          Length = 1907055

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 90     ggcaaaggaataggatagaa 109
              ||||||||||||||||||||
Sbjct: 928595 ggcaaaggaataggatagaa 928614

>emb|AL772387.13| Mouse DNA sequence from clone RP23-133B16 on chromosome 2, complete
             sequence
          Length = 195412

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 139   caactctcccactatagcaa 158
             ||||||||||||||||||||
Sbjct: 19584 caactctcccactatagcaa 19603


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,135,781
Number of Sequences: 3902068
Number of extensions: 2135781
Number of successful extensions: 39144
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 39106
Number of HSP's gapped (non-prelim): 38
length of query: 242
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 220
effective length of database: 17,147,199,772
effective search space: 3772383949840
effective search space used: 3772383949840
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)