ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl53g10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC148455.2| Xenopus tropicalis clone CH216-165I8, complete se... 42 0.68
2gb|AC135806.4| Mus musculus BAC clone RP24-289M10 from chromosom... 42 0.68
3gb|AC124548.5| Mus musculus BAC clone RP23-276P11 from 18, compl... 42 0.68
4gb|AC004629.1| Homo sapiens chromosome 5, BAC clone 87L18 (LBNL ... 40 2.7
5emb|BX908806.20| Zebrafish DNA sequence from clone DKEY-43A14 in... 40 2.7
6emb|AL591852.10| Human DNA sequence from clone RP11-249H20 on ch... 40 2.7
7gb|DQ436495.1| Homo sapiens death-associated protein kinase 1 (D... 40 2.7
8gb|AC106781.2| Homo sapiens chromosome 5 clone RP11-346A9, compl... 40 2.7
9emb|AL806515.7| Mouse DNA sequence from clone RP23-434M18 on chr... 40 2.7
10emb|CR383683.17| Zebrafish DNA sequence from clone DKEY-114C3 in... 40 2.7
11gb|AC118935.7| Mus musculus chromosome 5, clone RP24-172P15, com... 40 2.7
12dbj|AP005061.3| Homo sapiens genomic DNA, chromosome 18 clone:RP... 40 2.7
13gb|AC135015.3| Mus musculus BAC clone RP24-227L14 from 8, comple... 40 2.7
14gb|AC116763.11| Mus musculus chromosome 5, clone RP23-385G21, co... 40 2.7
15dbj|AP005136.2| Homo sapiens genomic DNA, chromosome 18 clone:RP... 40 2.7
16emb|AL844483.5| Mouse DNA sequence from clone RP23-245N10 on chr... 40 2.7

>gb|AC148455.2| Xenopus tropicalis clone CH216-165I8, complete sequence
          Length = 170350

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 126    tgctcacaaaaatgatcacat 146
              |||||||||||||||||||||
Sbjct: 107305 tgctcacaaaaatgatcacat 107325



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>gb|AC135806.4| Mus musculus BAC clone RP24-289M10 from chromosome 18, complete sequence
          Length = 179327

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 151    cttccaagttatatatgatct 171
              |||||||||||||||||||||
Sbjct: 140500 cttccaagttatatatgatct 140520



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>gb|AC124548.5| Mus musculus BAC clone RP23-276P11 from 18, complete sequence
          Length = 173805

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 151   cttccaagttatatatgatct 171
             |||||||||||||||||||||
Sbjct: 69345 cttccaagttatatatgatct 69365



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>gb|AC004629.1| Homo sapiens chromosome 5, BAC clone 87L18 (LBNL H97), complete
            sequence
          Length = 116019

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 58   gaaatggggaaaatcacatt 77
            ||||||||||||||||||||
Sbjct: 3853 gaaatggggaaaatcacatt 3872



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>emb|BX908806.20| Zebrafish DNA sequence from clone DKEY-43A14 in linkage group 17,
             complete sequence
          Length = 67753

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 67    aaaatcacattcagatacat 86
             ||||||||||||||||||||
Sbjct: 64714 aaaatcacattcagatacat 64733



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>emb|AL591852.10| Human DNA sequence from clone RP11-249H20 on chromosome 9 Contains
            part of the DAPK1 gene for death-assodeath-associated
            protein kinase 1, complete sequence
          Length = 72904

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 26   attgtaggacaataaaaaccgagttcca 53
            ||||||||||||| ||||||||| ||||
Sbjct: 8212 attgtaggacaattaaaaccgagatcca 8185



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>gb|DQ436495.1| Homo sapiens death-associated protein kinase 1 (DAPK1) gene, complete
             cds
          Length = 212999

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 26    attgtaggacaataaaaaccgagttcca 53
             ||||||||||||| ||||||||| ||||
Sbjct: 81018 attgtaggacaattaaaaccgagatcca 80991



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>gb|AC106781.2| Homo sapiens chromosome 5 clone RP11-346A9, complete sequence
          Length = 179284

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 58     gaaatggggaaaatcacatt 77
              ||||||||||||||||||||
Sbjct: 117210 gaaatggggaaaatcacatt 117191



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>emb|AL806515.7| Mouse DNA sequence from clone RP23-434M18 on chromosome X, complete
             sequence
          Length = 125394

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 187   ccatcctgttcatttccagc 206
             ||||||||||||||||||||
Sbjct: 22962 ccatcctgttcatttccagc 22943



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>emb|CR383683.17| Zebrafish DNA sequence from clone DKEY-114C3 in linkage group 22,
             complete sequence
          Length = 153095

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 54    tgttgaaatggggaaaatcacatt 77
             |||||||||||||||||| |||||
Sbjct: 57746 tgttgaaatggggaaaattacatt 57723



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>gb|AC118935.7| Mus musculus chromosome 5, clone RP24-172P15, complete sequence
          Length = 168119

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 137    atgatcacatgaaacttcca 156
              ||||||||||||||||||||
Sbjct: 159834 atgatcacatgaaacttcca 159815



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>dbj|AP005061.3| Homo sapiens genomic DNA, chromosome 18 clone:RP11-419P8, complete
             sequence
          Length = 186074

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 77    tcagatacatcatcaaaaac 96
             ||||||||||||||||||||
Sbjct: 23511 tcagatacatcatcaaaaac 23530



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>gb|AC135015.3| Mus musculus BAC clone RP24-227L14 from 8, complete sequence
          Length = 169193

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 57    tgaaatggggaaaatcacattcag 80
             ||||||||||||||||| ||||||
Sbjct: 85330 tgaaatggggaaaatcaaattcag 85307



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>gb|AC116763.11| Mus musculus chromosome 5, clone RP23-385G21, complete sequence
          Length = 196521

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 137    atgatcacatgaaacttcca 156
              ||||||||||||||||||||
Sbjct: 167589 atgatcacatgaaacttcca 167608



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>dbj|AP005136.2| Homo sapiens genomic DNA, chromosome 18 clone:RP11-715F3, complete
             sequence
          Length = 174547

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 77    tcagatacatcatcaaaaac 96
             ||||||||||||||||||||
Sbjct: 88691 tcagatacatcatcaaaaac 88710



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>emb|AL844483.5| Mouse DNA sequence from clone RP23-245N10 on chromosome X, complete
             sequence
          Length = 106787

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 6     cagttctgcatcaattattc 25
             ||||||||||||||||||||
Sbjct: 87238 cagttctgcatcaattattc 87219


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,505,273
Number of Sequences: 3902068
Number of extensions: 2505273
Number of successful extensions: 181025
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 180982
Number of HSP's gapped (non-prelim): 43
length of query: 211
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 189
effective length of database: 17,147,199,772
effective search space: 3240820756908
effective search space used: 3240820756908
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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