ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl53g05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YG3K_YEAST (P48235) Hypothetical 24.0 kDa protein in MOL1-NAT2 i... 29 2.5
2CGEE_BACSU (P42093) Protein cgeE 28 4.2

>YG3K_YEAST (P48235) Hypothetical 24.0 kDa protein in MOL1-NAT2 intergenic|
           region
          Length = 211

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -2

Query: 344 FMDYTTVCSCWVFTIPEKTSLTSQKI 267
           F DY TVC   + T P+KT++ ++KI
Sbjct: 5   FNDYCTVCDRLIPTSPQKTNINTRKI 30



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>CGEE_BACSU (P42093) Protein cgeE|
          Length = 259

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
 Frame = +2

Query: 50  PFVETYILFIFS*YSQLSYSIPVVCMTLHVNSETNTMIL--YALTYQ*TVK*FGSSTMPK 223
           PF E  I+ +   YS  +  +P+ C  L ++ +  T  +   A+  Q   K +GS  + +
Sbjct: 153 PFYEADIIILVVCYSDQAQKVPIGCGELFIDHQEKTAKIEEVAILDQFQRKGYGSILVKE 212

Query: 224 YLEIKKNPGV 253
            L I K+ G+
Sbjct: 213 MLSIAKSLGM 222


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,077,805
Number of Sequences: 219361
Number of extensions: 897805
Number of successful extensions: 1332
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1332
length of database: 80,573,946
effective HSP length: 95
effective length of database: 59,734,651
effective search space used: 1433631624
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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