>MUC1_HUMAN (P15941) Mucin-1 precursor (MUC-1) (Polymorphic epithelial mucin)|
           (PEM) (PEMT) (Episialin) (Tumor-associated mucin)
           (Carcinoma-associated mucin) (Tumor-associated
           epithelial membrane antigen) (EMA) (H23AG)
           (Peanut-reactive urinary mucin) (PUM)
          Length = 1255

 Score = 34.3 bits (77), Expect = 0.077
 Identities = 19/52 (36%), Positives = 27/52 (51%)
 Frame = +2

Query: 23  RDIITVAVTRLAGFKRSPQHSRATTAADNKPLAGFNRSPQHSKASTAADNKP 178
           +D+ +V VTR A    +P     T+A DNKP  G    P H   ++A D +P
Sbjct: 96  QDVTSVPVTRPALGSTTPPAHDVTSAPDNKPAPGSTAPPAHG-VTSAPDTRP 146

>NOLC1_RAT (P41777) Nucleolar phosphoprotein p130 (Nucleolar 130 kDa protein)|
           (140 kDa nucleolar phosphoprotein) (Nopp140) (Nucleolar
           and coiled-body phosphoprotein 1)
          Length = 704

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
 Frame = +2

Query: 71  SPQHSRATTAADNKPLAGFNRSPQHSKASTAADNKPPAVQQIP*KKHSSCTPKLRCRS-L 247
           +P+   A   A  K  AG  + PQ  KA +++  +  +  +    K S  TPK R  +  
Sbjct: 403 TPKPPAAKAVATPKQPAGSGQKPQSRKADSSSSEEESSSSEEEATKKSVTTPKARVTAKA 462

Query: 248 LRLLPTRQCP 277
              LP +Q P
Sbjct: 463 APSLPAKQAP 472

>MKNK2_RAT (Q5U2N4) MAP kinase-interacting serine/threonine-protein kinase 2|
           (EC 2.7.11.1) (MAP kinase signal-integrating kinase 2)
           (Mnk2)
          Length = 459

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
 Frame = +3

Query: 132 GAHNTLKQALLLITNHRQCSRYHEKSIAHVHLNYAAEASS--DCCQHDNALPLV 287
           GAH  ++  + LITN     +  EK + H+      E      C  H N L L+
Sbjct: 93  GAHARVQTCVNLITNQEYAVKIIEKQLGHIRSRVFREVEMLYQCQGHRNVLELI 146

>MKNK2_MOUSE (Q8CDB0) MAP kinase-interacting serine/threonine-protein kinase 2|
           (EC 2.7.11.1) (MAP kinase signal-integrating kinase 2)
           (Mnk2)
          Length = 459

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
 Frame = +3

Query: 132 GAHNTLKQALLLITNHRQCSRYHEKSIAHVHLNYAAEASS--DCCQHDNALPLV 287
           GAH  ++  + LITN     +  EK + H+      E      C  H N L L+
Sbjct: 93  GAHARVQTCVNLITNQEYAVKIIEKQLGHIRSRVFREVEMLYQCQGHRNVLELI 146

>LAB_DROME (P10105) Homeotic protein labial (F24) (F90-2)|
          Length = 635

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
 Frame = +2

Query: 56  AGFKRSPQHSRATTAADNKPLAGFNRSPQHSKAST--AADNKPPAVQQIP*KKHSSCTPK 229
           A  ++  Q+S +     N+   G   SP  S +S+  A++   PA  Q     HSS  P 
Sbjct: 332 AAHQQHHQNSVSPNGGMNRQQRGGVISPGSSTSSSTSASNGAHPASTQSKSPNHSSSIPT 391

Query: 230 LRCRSLLRLLPTRQCPS 280
            +   L R +P  Q PS
Sbjct: 392 YKWMQLKRNVPKPQAPS 408

>MUC1_HYLLA (Q29435) Mucin-1 precursor (MUC-1)|
          Length = 475

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +2

Query: 23  RDIITVAVTRLAGFKRSPQHSRATTAADNKPLAGFNRSPQHSKASTAADNKP 178
           +D+ +V VTR A    +      T+A D +P  G    P H   ++A D +P
Sbjct: 96  QDVTSVPVTRPAPGSTTSPAQDVTSAPDTRPALGSTAPPVHG-VTSAPDTRP 146

>H12_MOUSE (P15864) Histone H1.2 (H1 VAR.1) (H1c)|
          Length = 211

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 15/41 (36%), Positives = 17/41 (41%)
 Frame = +2

Query: 107 NKPLAGFNRSPQHSKASTAADNKPPAVQQIP*KKHSSCTPK 229
           NK  A     PQ  KA  A   KP    + P K   + TPK
Sbjct: 107 NKKAASGEAKPQAKKAGAAKAKKPAGAAKKPKKATGAATPK 147

>COL_HUMAN (P04118) Colipase precursor|
          Length = 112

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 234 AAEASSDCCQHDNALPLVLLTS 299
           +A+  S+CCQH +AL L   TS
Sbjct: 37  SAQCKSNCCQHSSALGLARCTS 58

>CTRB_GADMO (P80646) Chymotrypsin B (EC 3.4.21.1) [Contains: Chymotrypsin B|
           chain A; Chymotrypsin B chain B]
          Length = 245

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 10/67 (14%)
 Frame = +3

Query: 132 GAHNTLKQALLLITNHRQCSR-YHEKSIAHVHLNYAAEASSDC---------CQHDNALP 281
           G  N L+QA L + ++ +CS+ +    I+ V +   A  ++ C         CQ DN   
Sbjct: 149 GTPNKLQQAALPLMSNEECSQTWGNNMISDVMICAGAAGATSCMGDSGGPLVCQKDNVWT 208

Query: 282 LVLLTSY 302
           LV + S+
Sbjct: 209 LVGIVSW 215

>NH153_CAEEL (O01929) Nuclear hormone receptor family member nhr-153|
          Length = 415

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 224 PKLRCRSLLRLLPTRQCPSSC 286
           PK   R + ++LP  QCPS C
Sbjct: 9   PKRNRRKIYKILPQNQCPSVC 29

>ESMC_DROME (Q01070) Enhancer of split mgamma protein (E(spl)mgamma)|
           (HLH-mgamma) (Split locus enhancer protein mB)
          Length = 205

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +2

Query: 26  DIITVAVTRLAGFKRSPQHSRATTAADNKPLAGFNRSPQHS 148
           DI+ + VT L   K+  QH RA+      P  GF     H+
Sbjct: 60  DILELTVTHLQKMKQQRQHKRASGDESLTPAEGFRSGYIHA 100


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,628,160
Number of Sequences: 219361
Number of extensions: 763752
Number of successful extensions: 1919
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1916
length of database: 80,573,946
effective HSP length: 96
effective length of database: 59,515,290
effective search space used: 1428366960
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)