>ref|XM_992631.1| PREDICTED: Mus musculus dynein, axonemal, heavy chain 2 (Dnahc2),
            mRNA
          Length = 13273

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 85   tagagcaaccactgctgctga 105
            |||||||||||||||||||||
Sbjct: 2291 tagagcaaccactgctgctga 2271

>ref|XM_908804.2| PREDICTED: Mus musculus dynein, axonemal, heavy chain 2 (Dnahc2),
            mRNA
          Length = 13771

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 85   tagagcaaccactgctgctga 105
            |||||||||||||||||||||
Sbjct: 2774 tagagcaaccactgctgctga 2754

>ref|XM_894696.2| PREDICTED: Mus musculus dynein heavy chain domain 3, transcript
            variant 2 (Dnhd3), mRNA
          Length = 13704

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 85   tagagcaaccactgctgctga 105
            |||||||||||||||||||||
Sbjct: 2707 tagagcaaccactgctgctga 2687

>emb|AL596125.27| Mouse DNA sequence from clone RP23-5O23 on chromosome 11 Contains the
              Chd3 gene for chromodomain helicase DNA binding protein 3,
              five novel genes, the 3' end of the gene for a novel
              protein similar to dynein and four CpG islands, complete
              sequence
          Length = 165212

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 85     tagagcaaccactgctgctga 105
              |||||||||||||||||||||
Sbjct: 155319 tagagcaaccactgctgctga 155339

>gb|AY903244.1| Rattus norvegicus strain BN/Cub dynein axonemal heavy chain-like
            protein mRNA, partial cds
          Length = 11994

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 85   tagagcaaccactgctgctga 105
            |||||||||||||||||||||
Sbjct: 1085 tagagcaaccactgctgctga 1065

>gb|AY903243.1| Rattus norvegicus strain SHR/OlaIpcv dynein axonemal heavy chain-like
            protein mRNA, partial cds
          Length = 11994

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 85   tagagcaaccactgctgctga 105
            |||||||||||||||||||||
Sbjct: 1085 tagagcaaccactgctgctga 1065

>gb|AY903242.1| Rattus norvegicus strain WHD dynein axonemal heavy chain-like protein
            mRNA, partial cds
          Length = 11994

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 85   tagagcaaccactgctgctga 105
            |||||||||||||||||||||
Sbjct: 1085 tagagcaaccactgctgctga 1065

>ref|XM_220603.3| PREDICTED: Rattus norvegicus dynein-like protein 2 (DLP2), mRNA
          Length = 14742

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 85   tagagcaaccactgctgctga 105
            |||||||||||||||||||||
Sbjct: 3512 tagagcaaccactgctgctga 3492

>gb|AC146546.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0062M03 map near S6115, complete sequence
          Length = 138223

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 205   aaagcatagctcatgtacac 224
             ||||||||||||||||||||
Sbjct: 64929 aaagcatagctcatgtacac 64948

>gb|AC150753.3| Bos taurus  BAC CH240-283G19 (Children's Hospital Oakland Research
             Institute Bovine BAC Library (male)) complete sequence
          Length = 181464

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 69    ggagcccacaacactctaga 88
             ||||||||||||||||||||
Sbjct: 42827 ggagcccacaacactctaga 42846

>gb|AY371163.1| HIV-1 isolate 01CM.1152NG from Cameroon gag protein (gag) and pol
            protein (pol) genes, partial cds; vif protein (vif), vpr
            protein (vpr), tat protein (tat), rev protein (rev), vpu
            protein (vpu), and envelope glycoprotein (env) genes,
            complete cds; and nef protein (nef) gene, partial cds
          Length = 8419

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 274  cccttcctcttgtgcttcta 293
            ||||||||||||||||||||
Sbjct: 8217 cccttcctcttgtgcttcta 8198

>gb|AC020606.7| Homo sapiens BAC clone RP11-563O5 from 7, complete sequence
          Length = 151822

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 4      tttttcccatggcattcagagaga 27
              |||||||| |||||||||||||||
Sbjct: 112778 tttttcccctggcattcagagaga 112801

>gb|AC146090.2| Pan troglodytes BAC clone RP43-47O15 from 7, complete sequence
          Length = 189400

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 4     tttttcccatggcattcagagaga 27
             |||||||| |||||||||||||||
Sbjct: 94012 tttttcccctggcattcagagaga 93989

>emb|AL590427.15| Human DNA sequence from clone RP11-396N10 on chromosome 1 Contains
            the 5' end of the NTNG1 gene for netrin G1 and a CpG
            island, complete sequence
          Length = 160135

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 328  ggtcctcggggtcctctccc 347
            ||||||||||||||||||||
Sbjct: 8729 ggtcctcggggtcctctccc 8748

>gb|AF460972.1| HIV-1 isolate 96CM-1849 from Cameroon, complete genome
          Length = 8916

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 274  cccttcctcttgtgcttcta 293
            ||||||||||||||||||||
Sbjct: 8413 cccttcctcttgtgcttcta 8394

>ref|XM_943530.1| PREDICTED: Homo sapiens hypothetical protein LOC648974 (LOC648974),
           mRNA
          Length = 1149

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 328 ggtcctcggggtcctctccc 347
           ||||||||||||||||||||
Sbjct: 135 ggtcctcggggtcctctccc 116

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 205      aaagcatagctcatgtacac 224
                ||||||||||||||||||||
Sbjct: 12208253 aaagcatagctcatgtacac 12208272

>gb|AC157483.2| Pan troglodytes BAC clone CH251-287G22 from chromosome unknown,
             complete sequence
          Length = 163028

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 4     tttttcccatggcattcagagaga 27
             |||||||| |||||||||||||||
Sbjct: 94022 tttttcccctggcattcagagaga 93999

>gb|AF252954.1|AF252954 HIV-1 isolate 07u17 from USA nef protein (nef) gene, complete cds
          Length = 621

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 276 cttcctcttgtgcttctaac 295
           ||||||||||||||||||||
Sbjct: 190 cttcctcttgtgcttctaac 171

>gb|AF252953.1|AF252953 HIV-1 isolate 07u13 from USA nef protein (nef) gene, complete cds
          Length = 621

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 276 cttcctcttgtgcttctaac 295
           ||||||||||||||||||||
Sbjct: 190 cttcctcttgtgcttctaac 171

>gb|AY857110.1| HIV-1 isolate 7130706 from Australia, partial genome
          Length = 8872

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 274  cccttcctcttgtgcttcta 293
            ||||||||||||||||||||
Sbjct: 8317 cccttcctcttgtgcttcta 8298

>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 306     tgcagctcgccgacgcacca 325
               ||||||||||||||||||||
Sbjct: 1167414 tgcagctcgccgacgcacca 1167395

>dbj|AP005269.1| Pan troglodytes DNA, chromosome 7 clone:PTB-102E09, complete sequence
          Length = 172438

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 4     tttttcccatggcattcagagaga 27
             |||||||| |||||||||||||||
Sbjct: 12943 tttttcccctggcattcagagaga 12920

>gb|AF129351.1|AF129351 HIV-1 isolate 039nm-94(1) from United Kingdom, nef protein (nef)
           gene, complete cds
          Length = 624

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 274 cccttcctcttgtgcttcta 293
           ||||||||||||||||||||
Sbjct: 192 cccttcctcttgtgcttcta 173

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 205      aaagcatagctcatgtacac 224
                ||||||||||||||||||||
Sbjct: 12287560 aaagcatagctcatgtacac 12287579

>gb|U61774.1|HIVU61774 Human immunodeficiency virus type 1 Nef (nef) gene, complete cds
          Length = 618

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 276 cttcctcttgtgcttctaac 295
           ||||||||||||||||||||
Sbjct: 187 cttcctcttgtgcttctaac 168

>gb|U16937.1|HIVU16937 Human immunodeficiency virus type 1 clone RR4 nef gene, complete
           cds
          Length = 624

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 274 cccttcctcttgtgcttcta 293
           ||||||||||||||||||||
Sbjct: 192 cccttcctcttgtgcttcta 173

>gb|U16936.1|HIVU16936 Human immunodeficiency virus type 1 clone RR3 nef gene, complete
           cds
          Length = 624

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 274 cccttcctcttgtgcttcta 293
           ||||||||||||||||||||
Sbjct: 192 cccttcctcttgtgcttcta 173

>gb|L15502.1|HIVNEF179E Human immunodeficiency virus type 1 proviral nef gene, complete cds
          Length = 630

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 274 cccttcctcttgtgcttcta 293
           ||||||||||||||||||||
Sbjct: 198 cccttcctcttgtgcttcta 179

>gb|L15501.1|HIVNEF179D Human immunodeficiency virus type 1 proviral nef gene, complete cds
          Length = 630

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 274 cccttcctcttgtgcttcta 293
           ||||||||||||||||||||
Sbjct: 198 cccttcctcttgtgcttcta 179


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,796,975
Number of Sequences: 3902068
Number of extensions: 2796975
Number of successful extensions: 54187
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 54105
Number of HSP's gapped (non-prelim): 82
length of query: 364
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 342
effective length of database: 17,147,199,772
effective search space: 5864342322024
effective search space used: 5864342322024
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)