ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl53f07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DLX2B_BRARE (Q98876) Homeobox protein Dlx2b (DLX-5) (Distal-less... 28 6.8
2HTS1_COCCA (Q01886) HC-toxin synthetase (EC 6.3.2.-) (HTS) 27 8.9

>DLX2B_BRARE (Q98876) Homeobox protein Dlx2b (DLX-5) (Distal-less homeobox|
           protein 2b)
          Length = 276

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +2

Query: 152 PNPLLNQTDQVINRSISPPNTTHSDYKT 235
           PNP  N  D V  +   PPNTT   + T
Sbjct: 215 PNPTQNDGDTVSEQPTGPPNTTAPSFLT 242



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>HTS1_COCCA (Q01886) HC-toxin synthetase (EC 6.3.2.-) (HTS)|
          Length = 5218

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 8/29 (27%), Positives = 18/29 (62%)
 Frame = +1

Query: 46   IGRHVWLLEPHDTVIIPLERVNQ*SFSSP 132
            +G ++W++EP  T ++P+  V +    +P
Sbjct: 3297 LGANIWVVEPQRTALVPIGAVGELCIEAP 3325


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,753,618
Number of Sequences: 219361
Number of extensions: 766266
Number of successful extensions: 1584
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1584
length of database: 80,573,946
effective HSP length: 111
effective length of database: 56,224,875
effective search space used: 1349397000
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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