Clone Name | rbastl53f05 |
---|---|
Clone Library Name | barley_pub |
>gb|BT024182.1| Zea mays clone EL01N0414H08 mRNA sequence Length = 1514 Score = 46.1 bits (23), Expect = 0.057 Identities = 26/27 (96%) Strand = Plus / Minus Query: 155 aaacaaatgaaatcattagtcccttga 181 |||||||||||||| |||||||||||| Sbjct: 1409 aaacaaatgaaatcgttagtcccttga 1383
>gb|AY110220.1| Zea mays CL3641_1 mRNA sequence Length = 880 Score = 46.1 bits (23), Expect = 0.057 Identities = 23/23 (100%) Strand = Plus / Plus Query: 243 aacaactagatcagttattctga 265 ||||||||||||||||||||||| Sbjct: 167 aacaactagatcagttattctga 189 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 216 atacttacagcaaaccggatacag 239 ||||||||| |||||||||||||| Sbjct: 134 atacttacaacaaaccggatacag 157
>emb|BX323459.20| Zebrafish DNA sequence from clone DKEYP-27C11 in linkage group 6, complete sequence Length = 168538 Score = 44.1 bits (22), Expect = 0.23 Identities = 25/26 (96%) Strand = Plus / Minus Query: 154 gaaacaaatgaaatcattagtccctt 179 |||||||||| ||||||||||||||| Sbjct: 69408 gaaacaaatgtaatcattagtccctt 69383
>dbj|AK061872.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-A05, full insert sequence Length = 1080 Score = 44.1 bits (22), Expect = 0.23 Identities = 22/22 (100%) Strand = Plus / Minus Query: 243 aacaactagatcagttattctg 264 |||||||||||||||||||||| Sbjct: 1000 aacaactagatcagttattctg 979
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 44.1 bits (22), Expect = 0.23 Identities = 22/22 (100%) Strand = Plus / Plus Query: 243 aacaactagatcagttattctg 264 |||||||||||||||||||||| Sbjct: 13444996 aacaactagatcagttattctg 13445017
>dbj|AP003952.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OJ1294_G12 Length = 121979 Score = 44.1 bits (22), Expect = 0.23 Identities = 22/22 (100%) Strand = Plus / Plus Query: 243 aacaactagatcagttattctg 264 |||||||||||||||||||||| Sbjct: 106428 aacaactagatcagttattctg 106449
>dbj|AP003506.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0428A03 Length = 136799 Score = 44.1 bits (22), Expect = 0.23 Identities = 22/22 (100%) Strand = Plus / Plus Query: 243 aacaactagatcagttattctg 264 |||||||||||||||||||||| Sbjct: 56420 aacaactagatcagttattctg 56441
>dbj|AK100224.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023047L02, full insert sequence Length = 2490 Score = 44.1 bits (22), Expect = 0.23 Identities = 22/22 (100%) Strand = Plus / Minus Query: 243 aacaactagatcagttattctg 264 |||||||||||||||||||||| Sbjct: 2280 aacaactagatcagttattctg 2259
>dbj|AK065176.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002D10, full insert sequence Length = 2389 Score = 44.1 bits (22), Expect = 0.23 Identities = 22/22 (100%) Strand = Plus / Minus Query: 243 aacaactagatcagttattctg 264 |||||||||||||||||||||| Sbjct: 2258 aacaactagatcagttattctg 2237
>emb|AL161537.2|ATCHRIV37 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 37 Length = 199667 Score = 42.1 bits (21), Expect = 0.89 Identities = 21/21 (100%) Strand = Plus / Minus Query: 152 tagaaacaaatgaaatcatta 172 ||||||||||||||||||||| Sbjct: 109726 tagaaacaaatgaaatcatta 109706
>emb|AL035528.2|ATF18A5 Arabidopsis thaliana DNA chromosome 4, BAC clone F18A5 (ESSA project) Length = 118718 Score = 42.1 bits (21), Expect = 0.89 Identities = 21/21 (100%) Strand = Plus / Minus Query: 152 tagaaacaaatgaaatcatta 172 ||||||||||||||||||||| Sbjct: 88634 tagaaacaaatgaaatcatta 88614
>gb|AC105306.13| Bos taurus clone rp42-158g13, complete sequence Length = 196377 Score = 42.1 bits (21), Expect = 0.89 Identities = 21/21 (100%) Strand = Plus / Plus Query: 250 agatcagttattctgagtgtt 270 ||||||||||||||||||||| Sbjct: 14179 agatcagttattctgagtgtt 14199
>gb|AC068584.11| Homo sapiens chromosome 17, clone RP11-450A4, complete sequence Length = 65598 Score = 42.1 bits (21), Expect = 0.89 Identities = 21/21 (100%) Strand = Plus / Minus Query: 186 gagctggtctggggcagtgcc 206 ||||||||||||||||||||| Sbjct: 13363 gagctggtctggggcagtgcc 13343
>gb|AC068014.16| Homo sapiens chromosome 17, clone RP11-567O16, complete sequence Length = 148509 Score = 42.1 bits (21), Expect = 0.89 Identities = 21/21 (100%) Strand = Plus / Plus Query: 186 gagctggtctggggcagtgcc 206 ||||||||||||||||||||| Sbjct: 8101 gagctggtctggggcagtgcc 8121
>gb|AC116781.9| Mus musculus chromosome 16, clone RP24-134G20, complete sequence Length = 166568 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 160 aatgaaatcattagtcccttgatg 183 ||||||| |||||||||||||||| Sbjct: 72309 aatgaaagcattagtcccttgatg 72332
>emb|AL121873.15|HSB362E11 Human DNA sequence from clone RP13-362E11 on chromosome X Contains an ubiquitin-conjugating enzyme E2 variant 1 (UBE2V1) pseudogene, complete sequence Length = 212280 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 ctccaatcaaaacgaacaat 42 |||||||||||||||||||| Sbjct: 154863 ctccaatcaaaacgaacaat 154844
>emb|BX942831.16| Zebrafish DNA sequence from clone CH211-62B4 in linkage group 5, complete sequence Length = 147881 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 158 caaatgaaatcattagtccc 177 |||||||||||||||||||| Sbjct: 83404 caaatgaaatcattagtccc 83385
>emb|CR293515.12| Zebrafish DNA sequence from clone CH211-106H4 in linkage group 2, complete sequence Length = 192891 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 85 acagacatttatattcacag 104 |||||||||||||||||||| Sbjct: 62758 acagacatttatattcacag 62739
>gb|AF022141.2|AF022141 Homo sapiens chromosome 21 clone cosmid Q13F10 map 21q22.2, complete sequence Length = 43473 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 147 ggggctagaaacaaatgaaa 166 |||||||||||||||||||| Sbjct: 39847 ggggctagaaacaaatgaaa 39866
>gb|AF020801.2|AF020801 Homo sapiens chromosome 21 clone cosmid c102A0977 map 21q22.2, complete sequence Length = 44548 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 147 ggggctagaaacaaatgaaa 166 |||||||||||||||||||| Sbjct: 12869 ggggctagaaacaaatgaaa 12888
>emb|CR352825.1| Gallus gallus finished cDNA, clone ChEST121k3 Length = 1209 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 153 agaaacaaatgaaatcatta 172 |||||||||||||||||||| Sbjct: 876 agaaacaaatgaaatcatta 857
>dbj|AP001724.1| Homo sapiens genomic DNA, chromosome 21q, section 68/105 Length = 340000 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 147 ggggctagaaacaaatgaaa 166 |||||||||||||||||||| Sbjct: 97686 ggggctagaaacaaatgaaa 97705
>gb|AC010094.5|AC010094 Homo sapiens BAC clone RP11-336O5 from Y, complete sequence Length = 118436 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 ctccaatcaaaacgaacaat 42 |||||||||||||||||||| Sbjct: 31983 ctccaatcaaaacgaacaat 31964
>dbj|BS000199.1| Pan troglodytes chromosome 22 clone:PTB-024F05, map 22, complete sequences Length = 141767 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 147 ggggctagaaacaaatgaaa 166 |||||||||||||||||||| Sbjct: 27233 ggggctagaaacaaatgaaa 27252
>emb|AJ229041.1|HS229041 Homo sapiens 959 kb contig between AML1 and CBR1 on chromosome 21q22; segment 1/3 Length = 323000 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 147 ggggctagaaacaaatgaaa 166 |||||||||||||||||||| Sbjct: 85341 ggggctagaaacaaatgaaa 85322
>gb|AC002509.1|AC002509 Homo sapiens chromosome Y, clone 2Y, complete sequence Length = 142099 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 ctccaatcaaaacgaacaat 42 |||||||||||||||||||| Sbjct: 73562 ctccaatcaaaacgaacaat 73543
>gb|AC002488.1|AC002488 Homo sapiens chromosome X, clone 36X, complete sequence Length = 104710 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 23 ctccaatcaaaacgaacaat 42 |||||||||||||||||||| Sbjct: 82116 ctccaatcaaaacgaacaat 82135
>emb|AL672244.15| Mouse DNA sequence from clone RP23-43I8 on chromosome 16, complete sequence Length = 243114 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 160 aatgaaatcattagtcccttgatg 183 ||||||| |||||||||||||||| Sbjct: 234549 aatgaaagcattagtcccttgatg 234526 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,353,725 Number of Sequences: 3902068 Number of extensions: 2353725 Number of successful extensions: 39035 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 28 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 38968 Number of HSP's gapped (non-prelim): 67 length of query: 271 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 249 effective length of database: 17,147,199,772 effective search space: 4269652743228 effective search space used: 4269652743228 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)