>YT13_CAEEL (Q10917) Hypothetical protein B0252.3 in chromosome II|
          Length = 484

 Score = 30.8 bits (68), Expect = 0.89
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -3

Query: 185 HIHFCLFGSFNISCSITLVYL 123
           HIHF L G F ISCS   +Y+
Sbjct: 372 HIHFWLLGKFAISCSFMSIYM 392

>Y107_THEAC (Q9HLW7) UPF0290 protein Ta0107|
          Length = 176

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 10/24 (41%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
 Frame = -2

Query: 198 WPICTYSFLFIRVLQ--YFMFHYF 133
           WP    +FLF+ + +  +FM+HYF
Sbjct: 121 WPFALMAFLFLYIFERPFFMYHYF 144

>NRFD_HAEIN (P45014) Protein nrfD homolog|
          Length = 321

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 7/58 (12%)
 Frame = -3

Query: 221 LDYPLPFHGP------SVHIHFCLFGSFNISCSITLVYLNHVRLDELI-S*IIRPDVI 69
           LDYP+PFH P      ++ I+  L G  + +  + + Y    +L+ L  + IIR  VI
Sbjct: 3   LDYPVPFHTPNLVWDYTIAIYLFLLGISSGAVQLAIAYKRSNKLENLSQNWIIRSGVI 60

>DCD_METJA (Q57872) dCTP deaminase, dUMP-forming (EC 3.5.4.30) (Bifunctional|
           deaminase/diphosphatase) (MjDCD-DUT) (DCD/DUT)
          Length = 204

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +2

Query: 176 NEYVQMGHEMEADNQGRHRLAKPI*TKLVRSGW 274
           NEY+++ +++ A  QGR  L +   T    +GW
Sbjct: 101 NEYIELPNDISAQYQGRSSLGRVFLTSHQTAGW 133

>MTFA_YERPS (Q667H7) Putative RNA 2'-O-ribose methyltransferase mtfA (EC|
           2.1.1.-)
          Length = 368

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 6/36 (16%)
 Frame = -3

Query: 299 NLAETSKTTTH------F*PTWSKLVWLICDALDYP 210
           +L +T + T H      + PT S + WL+CD ++ P
Sbjct: 248 SLMDTGQVTHHRADGFKYEPTRSNIYWLVCDMVEKP 283

>MTFA_YERPE (Q8ZH78) Putative RNA 2'-O-ribose methyltransferase mtfA (EC|
           2.1.1.-)
          Length = 368

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 6/36 (16%)
 Frame = -3

Query: 299 NLAETSKTTTH------F*PTWSKLVWLICDALDYP 210
           +L +T + T H      + PT S + WL+CD ++ P
Sbjct: 248 SLMDTGQVTHHRADGFKYEPTRSNIYWLVCDMVEKP 283


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,397,580
Number of Sequences: 219361
Number of extensions: 905474
Number of successful extensions: 1501
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1500
length of database: 80,573,946
effective HSP length: 83
effective length of database: 62,366,983
effective search space used: 1496807592
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)