ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl53e10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 115 7e-23
2dbj|AP003726.3| Oryza sativa (japonica cultivar-group) genomic D... 115 7e-23
3dbj|AK065611.1| Oryza sativa (japonica cultivar-group) cDNA clon... 115 7e-23
4ref|XM_849931.1| PREDICTED: Canis familiaris similar to G2/mitot... 42 0.87
5emb|BX511157.10| Zebrafish DNA sequence from clone DKEY-197M14 i... 42 0.87
6ref|XM_675903.1| Aspergillus nidulans FGSC A4 hypothetical prote... 40 3.4
7dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 3.4

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  115 bits (58), Expect = 7e-23
 Identities = 73/78 (93%)
 Strand = Plus / Plus

                                                                            
Query: 187      ccggcggggcgaggttgagcaccatgtcgggccccttctccccggcgacggaaaactcgt 246
                ||||||| ||||||||||||||||||||||| ||||| || ||||||||||| |||||||
Sbjct: 29000693 ccggcggcgcgaggttgagcaccatgtcggggcccttgtcgccggcgacggagaactcgt 29000752

                                  
Query: 247      cgggcaccggcacgccca 264
                ||||||||||||||||||
Sbjct: 29000753 cgggcaccggcacgccca 29000770



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>dbj|AP003726.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0596H10
          Length = 166570

 Score =  115 bits (58), Expect = 7e-23
 Identities = 73/78 (93%)
 Strand = Plus / Plus

                                                                         
Query: 187   ccggcggggcgaggttgagcaccatgtcgggccccttctccccggcgacggaaaactcgt 246
             ||||||| ||||||||||||||||||||||| ||||| || ||||||||||| |||||||
Sbjct: 15680 ccggcggcgcgaggttgagcaccatgtcggggcccttgtcgccggcgacggagaactcgt 15739

                               
Query: 247   cgggcaccggcacgccca 264
             ||||||||||||||||||
Sbjct: 15740 cgggcaccggcacgccca 15757



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>dbj|AK065611.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013029I23, full
            insert sequence
          Length = 2957

 Score =  115 bits (58), Expect = 7e-23
 Identities = 73/78 (93%)
 Strand = Plus / Minus

                                                                        
Query: 187  ccggcggggcgaggttgagcaccatgtcgggccccttctccccggcgacggaaaactcgt 246
            ||||||| ||||||||||||||||||||||| ||||| || ||||||||||| |||||||
Sbjct: 2650 ccggcggcgcgaggttgagcaccatgtcggggcccttgtcgccggcgacggagaactcgt 2591

                              
Query: 247  cgggcaccggcacgccca 264
            ||||||||||||||||||
Sbjct: 2590 cgggcaccggcacgccca 2573



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>ref|XM_849931.1| PREDICTED: Canis familiaris similar to G2/mitotic-specific cyclin
           B1 (LOC489180), mRNA
          Length = 929

 Score = 42.1 bits (21), Expect = 0.87
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 24  catcattcacatcaagaattacatc 48
           |||||||||| ||||||||||||||
Sbjct: 105 catcattcacctcaagaattacatc 81



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>emb|BX511157.10| Zebrafish DNA sequence from clone DKEY-197M14 in linkage group 5,
             complete sequence
          Length = 159528

 Score = 42.1 bits (21), Expect = 0.87
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 70    tgaagttttacagtgtaaaaa 90
             |||||||||||||||||||||
Sbjct: 11082 tgaagttttacagtgtaaaaa 11062



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>ref|XM_675903.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN7726.2), mRNA
          Length = 3714

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 145  tgccgtgcctttcaaattcc 164
            ||||||||||||||||||||
Sbjct: 2280 tgccgtgcctttcaaattcc 2299



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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 244     cgtcgggcaccggcacgccc 263
               ||||||||||||||||||||
Sbjct: 2756643 cgtcgggcaccggcacgccc 2756662


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,214,955
Number of Sequences: 3902068
Number of extensions: 2214955
Number of successful extensions: 40608
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 40522
Number of HSP's gapped (non-prelim): 86
length of query: 264
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 242
effective length of database: 17,147,199,772
effective search space: 4149622344824
effective search space used: 4149622344824
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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