ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl53e09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1NU3M_ANOGA (P34850) NADH-ubiquinone oxidoreductase chain 3 (EC 1... 29 2.5
2AIG1_HUMAN (Q9NVV5) Androgen-induced protein 1 (AIG-1) 28 5.6
3AIG1_MOUSE (Q9D8B1) Androgen-induced protein 1 (AIG-1) 28 7.3

>NU3M_ANOGA (P34850) NADH-ubiquinone oxidoreductase chain 3 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 3)
          Length = 117

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 9/63 (14%)
 Frame = -3

Query: 167 VLNTLTMYIISGQLCIMYMATLATKKA*LDR---------WQPANSAF*CFIIRQLIQAN 15
           +L+T+T+ I    + +M +ATL +KK  LDR         + P NS+   F +R  + A 
Sbjct: 3   MLSTMTLIIFIITIVVMMLATLLSKKTLLDREKCSPFECGFDPMNSSRLPFSLRFFLIAI 62

Query: 14  MYL 6
           ++L
Sbjct: 63  IFL 65



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>AIG1_HUMAN (Q9NVV5) Androgen-induced protein 1 (AIG-1)|
          Length = 245

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = -1

Query: 169 PC*ILSLCTLSQVSYVLCIWQH*QLKKHS*IGGSRQIVPFDVLLSDN*FKRICI 8
           PC +L +  L     +LC ++  ++  H   GGS + + F  L+    F  IC+
Sbjct: 5   PCQVLRMAILLSYCSILCNYKAIEMPSHQTYGGSWKFLTFIDLVIQAVFFGICV 58



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>AIG1_MOUSE (Q9D8B1) Androgen-induced protein 1 (AIG-1)|
          Length = 262

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = -1

Query: 169 PC*ILSLCTLSQVSYVLCIWQH*QLKKHS*IGGSRQIVPFDVLLSDN*FKRICI 8
           PC +L +  L     +LC ++  ++  H   GGS + + F  L+    F  IC+
Sbjct: 5   PCQVLRVAILLSYCSILCNYKAIEMPSHQTYGGSWKFLTFIDLVIQAVFFGICV 58


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,314,986
Number of Sequences: 219361
Number of extensions: 769501
Number of successful extensions: 1224
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1224
length of database: 80,573,946
effective HSP length: 91
effective length of database: 60,612,095
effective search space used: 1454690280
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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