ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl53e09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC145955.3| Gallus gallus chromosome UNK clone CH261-13M13, c... 42 1.2
2gb|AC115065.11| Mus musculus chromosome 3, clone RP24-401H12, co... 40 4.6
3emb|X81638.1|BBSP6I Bacillus sp. plasmid pXH13 Bsp6I restriction... 40 4.6
4gb|AC106799.3| Homo sapiens chromosome 5 clone RP11-445O3, compl... 40 4.6
5gb|AC026711.6| Homo sapiens chromosome 5 clone CTD-2093E18, comp... 40 4.6
6gb|AE017143.1| Haemophilus ducreyi strain 35000HP complete genome 40 4.6

>gb|AC145955.3| Gallus gallus chromosome UNK clone CH261-13M13, complete sequence
          Length = 200102

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 36     gataataaaacatcaaaaggc 56
              |||||||||||||||||||||
Sbjct: 137633 gataataaaacatcaaaaggc 137613



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>gb|AC115065.11| Mus musculus chromosome 3, clone RP24-401H12, complete sequence
          Length = 157225

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 107    ttgccatatacataatacat 126
              ||||||||||||||||||||
Sbjct: 114110 ttgccatatacataatacat 114091



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>emb|X81638.1|BBSP6I Bacillus sp. plasmid pXH13 Bsp6I restriction endonuclease and
            methyltransferase genes
          Length = 2126

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 34   ctgataataaaacatcaaaa 53
            ||||||||||||||||||||
Sbjct: 1319 ctgataataaaacatcaaaa 1300



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>gb|AC106799.3| Homo sapiens chromosome 5 clone RP11-445O3, complete sequence
          Length = 176095

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 287    gaagtttgacaaaataggtg 306
              ||||||||||||||||||||
Sbjct: 150264 gaagtttgacaaaataggtg 150283



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>gb|AC026711.6| Homo sapiens chromosome 5 clone CTD-2093E18, complete sequence
          Length = 191309

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 287   gaagtttgacaaaataggtg 306
             ||||||||||||||||||||
Sbjct: 19054 gaagtttgacaaaataggtg 19073



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>gb|AE017143.1| Haemophilus ducreyi strain 35000HP complete genome
          Length = 1698955

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 13     atattcgcttgaatcagttg 32
              ||||||||||||||||||||
Sbjct: 964446 atattcgcttgaatcagttg 964465


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,153,110
Number of Sequences: 3902068
Number of extensions: 3153110
Number of successful extensions: 61183
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 61162
Number of HSP's gapped (non-prelim): 21
length of query: 349
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 327
effective length of database: 17,147,199,772
effective search space: 5607134325444
effective search space used: 5607134325444
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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