ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl53e06 |
|---|---|
| Clone Library Name | barley_pub |
>NUYM_BOVIN (Q02375) NADH-ubiquinone oxidoreductase 18 kDa subunit,| mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3) (Complex I-18 kDa) (CI-18 kDa) (Complex I-AQDQ) (CI-AQDQ) Length = 175 Score = 63.5 bits (153), Expect = 2e-10 Identities = 30/59 (50%), Positives = 37/59 (62%) Frame = -3 Query: 411 LMGWTSTGDPYANVGEAGLTFDSAESAKAFADKHGWEYVVRKRHTPLLKPKTYAENFKW 235 LMGW ST DP +N+ LTF + E A AFA+K+GW Y V +R P K K+Y NF W Sbjct: 111 LMGWASTADPLSNLV---LTFSTKEDAVAFAEKNGWSYDVEERKVPKPKSKSYGANFSW 166
>NUYM_MOUSE (Q9CXZ1) NADH-ubiquinone oxidoreductase 18 kDa subunit,| mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3) (Complex I-18 kDa) (CI-18 kDa) (Complex I-AQDQ) (CI-AQDQ) Length = 175 Score = 62.0 bits (149), Expect = 5e-10 Identities = 29/59 (49%), Positives = 37/59 (62%) Frame = -3 Query: 411 LMGWTSTGDPYANVGEAGLTFDSAESAKAFADKHGWEYVVRKRHTPLLKPKTYAENFKW 235 LMGW ST DP +N+ LTF + E A AFA+K+GW Y V ++ P K K+Y NF W Sbjct: 111 LMGWASTADPLSNMV---LTFSAKEDAIAFAEKNGWSYDVEEKKVPKPKSKSYGANFSW 166
>NUYM_HUMAN (O43181) NADH-ubiquinone oxidoreductase 18 kDa subunit,| mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3) (Complex I-18 kDa) (CI-18 kDa) (Complex I-AQDQ) (CI-AQDQ) Length = 175 Score = 62.0 bits (149), Expect = 5e-10 Identities = 28/59 (47%), Positives = 37/59 (62%) Frame = -3 Query: 411 LMGWTSTGDPYANVGEAGLTFDSAESAKAFADKHGWEYVVRKRHTPLLKPKTYAENFKW 235 LMGW ST DP +N+ LTF + E A +FA+K+GW Y + +R P K K+Y NF W Sbjct: 111 LMGWASTADPLSNMV---LTFSTKEDAVSFAEKNGWSYDIEERKVPKPKSKSYGANFSW 166
>NUYM_NEUCR (P25711) NADH-ubiquinone oxidoreductase 21 kDa subunit,| mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3) (Complex I-21KD) (CI-21KD) Length = 218 Score = 47.0 bits (110), Expect = 2e-05 Identities = 26/57 (45%), Positives = 33/57 (57%) Frame = -3 Query: 411 LMGWTSTGDPYANVGEAGLTFDSAESAKAFADKHGWEYVVRKRHTPLLKPKTYAENF 241 LMGW S+GD V LTF + E A FA+K G+EY V++ + PK YA NF Sbjct: 152 LMGWQSSGD---FVQGTHLTFRTKEEAIQFAEKQGYEYFVQEPNQRHFTPKAYANNF 205
>KNIR_DROVI (Q24753) Zygotic gap protein knirps| Length = 481 Score = 31.2 bits (69), Expect = 0.99 Identities = 17/50 (34%), Positives = 24/50 (48%) Frame = +3 Query: 48 QIQLQCVLITRLMETCSSSYCTTGMEQSKISTSGREREHLLKISRQHTNP 197 Q++ +C IT +CSSS T+ S ST E + + RQ NP Sbjct: 409 QLEAECTTITNTTNSCSSSTSTSSSNSSTSST-----EAAVAVKRQKLNP 453
>VP21_TBSVB (P50631) Core protein P21 (P22)| Length = 189 Score = 30.4 bits (67), Expect = 1.7 Identities = 20/57 (35%), Positives = 30/57 (52%) Frame = +1 Query: 211 FLRLRWAFPLKVLCVRFGLQKRCVALPNHIFPSMFVSKCLC*LGTVKRKSSFTNISI 381 FL R F + V +FGL K C +LP + M++ L L K+K+S T+ S+ Sbjct: 134 FLEGRELFSISVKW-QFGLSKNCYSLPQSKWKVMYLEDALKVLKLSKKKASKTDSSV 189
>Y1R1_DROME (P16424) Hypothetical 50 kDa protein in type I retrotransposable| element R1DM (ORF 1) Length = 471 Score = 30.0 bits (66), Expect = 2.2 Identities = 18/48 (37%), Positives = 23/48 (47%) Frame = +3 Query: 84 METCSSSYCTTGMEQSKISTSGREREHLLKISRQHTNPQLRLLPPSSV 227 ME+ SS +G SK+S GR R HL S T +L L + V Sbjct: 23 MESDSSVSALSGSSASKVSRRGRRRSHLASKSSAPTQAKLVALASNGV 70
>SPHS_SYNP7 (P39664) Sensor protein sphS (EC 2.7.13.3)| Length = 413 Score = 29.6 bits (65), Expect = 2.9 Identities = 12/47 (25%), Positives = 24/47 (51%) Frame = -1 Query: 302 NMWLGSATHLF*SPKRTQRTLSGKAHRRRRKQPKLWICMLSGDFQKM 162 N W+ H +P + R L+ R + +P++W+ L G+ Q++ Sbjct: 171 NRWVSDVAHELKTPLTSIRLLAEALRDRLQDEPQVWVDRLLGETQRL 217
>VP21_TBSVT (P50634) Core protein P21 (P22)| Length = 189 Score = 29.3 bits (64), Expect = 3.7 Identities = 20/57 (35%), Positives = 29/57 (50%) Frame = +1 Query: 211 FLRLRWAFPLKVLCVRFGLQKRCVALPNHIFPSMFVSKCLC*LGTVKRKSSFTNISI 381 FL R F + V +FGL K C +LP + M+ L L K+K+S T+ S+ Sbjct: 134 FLEGRELFSISVRW-QFGLSKNCYSLPQSKWKVMYQEDALKVLKPSKKKASKTDSSV 189
>VP21_TBSVK (P50633) Core protein P21 (P22)| Length = 189 Score = 29.3 bits (64), Expect = 3.7 Identities = 20/57 (35%), Positives = 29/57 (50%) Frame = +1 Query: 211 FLRLRWAFPLKVLCVRFGLQKRCVALPNHIFPSMFVSKCLC*LGTVKRKSSFTNISI 381 FL R F + V +FGL K C +LP + M+ L L K+K+S T+ S+ Sbjct: 134 FLEGRELFSISVRW-QFGLSKNCYSLPQSKWKVMYQEDALKVLKPSKKKASKTDSSV 189
>VP21_TBSVJ (P50632) Core protein P21 (P22)| Length = 189 Score = 29.3 bits (64), Expect = 3.7 Identities = 20/57 (35%), Positives = 29/57 (50%) Frame = +1 Query: 211 FLRLRWAFPLKVLCVRFGLQKRCVALPNHIFPSMFVSKCLC*LGTVKRKSSFTNISI 381 FL R F + V +FGL K C +LP + M+ L L K+K+S T+ S+ Sbjct: 134 FLEGRELFSISVRW-QFGLSKNCYSLPQSKWKVMYQEDALKVLKPSKKKASKTDSSV 189
>VP21_TBSVC (P11691) Core protein P21 (P22)| Length = 189 Score = 29.3 bits (64), Expect = 3.7 Identities = 20/57 (35%), Positives = 29/57 (50%) Frame = +1 Query: 211 FLRLRWAFPLKVLCVRFGLQKRCVALPNHIFPSMFVSKCLC*LGTVKRKSSFTNISI 381 FL R F + V +FGL K C +LP + M+ L L K+K+S T+ S+ Sbjct: 134 FLEGRELFSISVRW-QFGLSKNCYSLPQSKWKVMYQEDALKVLRPSKKKASKTDSSV 189
>VP21_TBSVA (P50630) Core protein P21 (P22)| Length = 189 Score = 28.9 bits (63), Expect = 4.9 Identities = 20/57 (35%), Positives = 28/57 (49%) Frame = +1 Query: 211 FLRLRWAFPLKVLCVRFGLQKRCVALPNHIFPSMFVSKCLC*LGTVKRKSSFTNISI 381 FL R F + V +FGL K C +LP + M+ L L K+K+S T S+ Sbjct: 134 FLEGRELFSISVKW-QFGLSKNCYSLPQSKWKVMYQEDALKVLKPSKKKASKTGSSV 189
>VP21_AMCV (P15961) Core protein P21 (P22)| Length = 189 Score = 28.5 bits (62), Expect = 6.4 Identities = 15/42 (35%), Positives = 23/42 (54%) Frame = +1 Query: 256 RFGLQKRCVALPNHIFPSMFVSKCLC*LGTVKRKSSFTNISI 381 +FGL K C +LP + M+ L L K+K+S T+ S+ Sbjct: 148 QFGLSKNCYSLPQSKWKVMYQEDALKVLKPSKKKASRTDSSV 189
>APLP_DROME (Q9V496) Apolipophorins precursor (Retinoid- and fatty acid-binding| glycoprotein) [Contains: Apolipophorin-2 (Apolipophorin II) (ApoL2); Apolipophorin-1 (Apolipophorin I) (ApoL1)] Length = 3351 Score = 28.5 bits (62), Expect = 6.4 Identities = 13/42 (30%), Positives = 23/42 (54%) Frame = -1 Query: 395 RLVIRMLMLVKLDLRLTVPSQQRHLLTNMDGNMWLGSATHLF 270 +L+I+ + + + +R T P H++ D W+GS TH F Sbjct: 2703 QLLIKAVRSIWVSIRSTYPGSSDHVI---DFQSWIGSLTHSF 2741
>YEHL_ECOLI (P33348) Hypothetical protein yehL| Length = 362 Score = 28.1 bits (61), Expect = 8.3 Identities = 12/32 (37%), Positives = 15/32 (46%) Frame = -3 Query: 369 GEAGLTFDSAESAKAFADKHGWEYVVRKRHTP 274 G+AGLT S K+GW Y + H P Sbjct: 102 GDAGLTIQGGASTTEDQIKYGWNYALLINHGP 133 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 59,509,213 Number of Sequences: 219361 Number of extensions: 1138312 Number of successful extensions: 2942 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 2898 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2938 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2169600302 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
