ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl53e04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PURL_THET8 (Q5SMH8) Phosphoribosylformylglycinamidine synthase I... 29 3.0
2PURL_THET2 (Q72IH7) Phosphoribosylformylglycinamidine synthase I... 29 3.0
3YEGT_ECOLI (P76417) Putative nucleoside transporter yegT 28 8.7

>PURL_THET8 (Q5SMH8) Phosphoribosylformylglycinamidine synthase II (EC 6.3.5.3)|
           (FGAM synthase II)
          Length = 725

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -1

Query: 177 APLGLWRYYSGERTGRDGLGWGYF 106
           A LG   YY+G +TGRDG+G   F
Sbjct: 191 ASLGRPIYYAGAKTGRDGIGGAAF 214



to top

>PURL_THET2 (Q72IH7) Phosphoribosylformylglycinamidine synthase II (EC 6.3.5.3)|
           (FGAM synthase II)
          Length = 725

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -1

Query: 177 APLGLWRYYSGERTGRDGLGWGYF 106
           A LG   YY+G +TGRDG+G   F
Sbjct: 191 ASLGRPIYYAGAKTGRDGIGGAAF 214



to top

>YEGT_ECOLI (P76417) Putative nucleoside transporter yegT|
          Length = 425

 Score = 27.7 bits (60), Expect = 8.7
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = -1

Query: 183 WFAPLGLWRYYSGERTGRDGLGWGY 109
           WF PL LW   SG   G   +GW Y
Sbjct: 21  WFVPLWLWLSKSGFSAGE--IGWSY 43


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,645,617
Number of Sequences: 219361
Number of extensions: 331375
Number of successful extensions: 814
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 814
length of database: 80,573,946
effective HSP length: 40
effective length of database: 71,799,506
effective search space used: 1723188144
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top