ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl53e03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YAEC_SCHPO (Q09852) Putative inorganic phosphate transporter C23... 28 7.2
2VILI4_ARATH (O65570) Villin-4 28 7.2
3NOS_DROME (Q27571) Nitric-oxide synthase (EC 1.14.13.39) (dNOS) 27 9.4
4DP2L_ARCFU (O28552) DNA polymerase II large subunit (EC 2.7.7.7)... 27 9.4

>YAEC_SCHPO (Q09852) Putative inorganic phosphate transporter C23D3.12|
          Length = 559

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +1

Query: 226 VQRSGKKKVHHGLW*WYWN 282
           V R G  K H G W WY+N
Sbjct: 538 VLRGGNGKTHQGRWSWYFN 556



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>VILI4_ARATH (O65570) Villin-4|
          Length = 974

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -1

Query: 306 QITRTYQQIPVPSPKSMMNLFFSTSLYIKLK 214
           +I R    IP P PKS +  FF+   YI LK
Sbjct: 22  EIWRIENFIPTPIPKSSIGKFFTGDSYIVLK 52



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>NOS_DROME (Q27571) Nitric-oxide synthase (EC 1.14.13.39) (dNOS)|
          Length = 1349

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +3

Query: 150 LSYIGXXXXXXXXXXQLMHMGFLILCTEK-WKKKGSSWTLV 269
           +SY G            M++ F  +CT+  WK KGS W ++
Sbjct: 393 ISYAGYKQADGKIIGDPMNVEFTEVCTKLGWKSKGSEWDIL 433



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>DP2L_ARCFU (O28552) DNA polymerase II large subunit (EC 2.7.7.7) (Pol II)|
          Length = 1143

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 298 CDLAGSTTHQGFYCPSGR 351
           CD+ G  T Q +YCPS R
Sbjct: 663 CDVCGELTEQLYYCPSCR 680


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,495,745
Number of Sequences: 219361
Number of extensions: 1182042
Number of successful extensions: 2131
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2094
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2131
length of database: 80,573,946
effective HSP length: 96
effective length of database: 59,515,290
effective search space used: 1428366960
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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