ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl53e02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT016619.1| Zea mays clone Contig452 mRNA sequence 109 6e-21
2gb|AY104402.1| Zea mays PCO137047 mRNA sequence 109 6e-21
3ref|XM_464667.1| Oryza sativa (japonica cultivar-group), mRNA 88 2e-14
4dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 88 2e-14
5dbj|AP004996.3| Oryza sativa (japonica cultivar-group) genomic D... 88 2e-14
6dbj|AK066996.1| Oryza sativa (japonica cultivar-group) cDNA clon... 88 2e-14
7dbj|AK060032.1| Oryza sativa (japonica cultivar-group) cDNA clon... 88 2e-14
8gb|AC121961.2| Mus musculus BAC clone RP24-255E8 from 10, comple... 44 0.30
9gb|AF220365.2|AF220365 Mus musculus nucleolar RNA helicase II/Gu... 44 0.30
10ref|XM_450614.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.2
11gb|BT013806.1| Lycopersicon esculentum clone 132727F, mRNA sequence 42 1.2
12emb|AL079337.13|HSJ813H11 Human DNA sequence from clone RP4-813H... 42 1.2
13emb|AL078638.9|HSA535K18 Human DNA sequence from clone RP11-535K... 42 1.2
14dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete g... 42 1.2
15dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
16dbj|AP005572.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
17dbj|AK068165.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.2
18gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome 42 1.2
19gb|AC146131.4| Pan troglodytes BAC clone RP43-4F15 from 7, compl... 40 4.6
20gb|AC024730.7| Homo sapiens BAC clone RP11-422E4 from 7, complet... 40 4.6
21gb|AC116478.14| Mus musculus chromosome 8, clone RP23-396E23, co... 40 4.6
22gb|AC013285.10| Homo sapiens chromosome 10 clone RP11-143D9, com... 40 4.6
23emb|CR847515.10| Zebrafish DNA sequence from clone DKEYP-60A7 in... 40 4.6
24emb|BX276094.4| Human DNA sequence from clone RP11-156J5 on chro... 40 4.6
25gb|AC138174.9| Mus musculus, clone RP24-198I22, complete sequence 40 4.6
26emb|BX901956.4| Zebrafish DNA sequence from clone CH211-284C12 i... 40 4.6
27gb|AC156993.3| Mus musculus chromosome 8, clone RP23-79L16, comp... 40 4.6
28gb|AY527062.1| Mytilus edulis 18S ribosomal RNA gene, partial se... 40 4.6
29gb|AC134763.4| Rattus norvegicus BAC CH230-221M14 (Children's H... 40 4.6
30dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.6
31emb|BX005315.7| Zebrafish DNA sequence from clone DKEY-79E6, com... 40 4.6
32dbj|AB201231.1| Musculista senhousia gene for 18S ribosomal RNA,... 40 4.6
33dbj|AP003286.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.6
34gb|AF124207.1|AF124207 Musculus senhousei 18S ribosomal RNA gene... 40 4.6
35gb|AF124206.1|AF124206 Musculus discors 18S ribosomal RNA gene, ... 40 4.6
36gb|L33448.1|MSLSRRNAA Mytilus edulis 18S small subunit ribosomal... 40 4.6
37gb|L33449.1|MSLSRRNAB Mytilus californianus 18S small subunit ri... 40 4.6
38gb|L33451.1|MSLSRRNAC Mytilus galloprovincialis isolate Morgat, ... 40 4.6
39gb|L33453.1|MSLSRRNAE Mytilus trossulus strain Pacific strain 1 ... 40 4.6
40gb|L33454.1|MSLSRRNAF Mytilus trossulus strain Pacific strain 2 ... 40 4.6
41gb|L33455.1|MSLSRRNAG Mytilus trossulus strain Pacific strain 3 ... 40 4.6
42emb|AL929222.6| Zebrafish DNA sequence from clone DKEY-31N5, com... 40 4.6
43emb|AJ227881.1|HSA227881 Homo sapiens partial mRNA; ID LG141-8A 40 4.6
44emb|AJ227880.1|HSA227880 Homo sapiens partial mRNA; ID LG141-7C 40 4.6
45emb|AL805977.2| Human DNA sequence from clone RP11-491O20 on chr... 40 4.6
46emb|CR762426.15| Zebrafish DNA sequence from clone DKEY-54K9 in ... 40 4.6
47dbj|AP001561.4| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 4.6
48emb|AL928958.15| Mouse DNA sequence from clone RP23-344N23 on ch... 40 4.6
49gb|DQ310715.1| Mytella strigata 18S ribosomal RNA gene, partial ... 40 4.6
50emb|X90960.1|AN18SRRNA A.noae 18S ribosomal RNA gene 40 4.6
51emb|X91403.1|AGEL18S A.gelatinosum 18S ribosomal RNA gene 40 4.6
52gb|L24490.1|MSLMRNAB Mytilus trossulus 18S ribosomal RNA (18S rRNA) 40 4.6
53gb|L24489.1|MSLMRNAA Mytilus edulis 18S ribosomal RNA (18SrRNA) 40 4.6 
>gb|BT016619.1| Zea mays clone Contig452 mRNA sequence
          Length = 1911

 Score =  109 bits (55), Expect = 6e-21
 Identities = 97/111 (87%)
 Strand = Plus / Minus

                                                                        
Query: 240  tgcttgtgagcgagctccttgagaacatttccgaggtcggactcgcccttggtgctcttg 299
            ||||||| ||| |||| |||||||||||| |||||||| | |||| ||||| || |||||
Sbjct: 1769 tgcttgtaagccagcttcttgagaacattgccgaggtcagcctcggccttgatgttcttg 1710

                                                               
Query: 300  acccacttggccttgatcctcaccctctcgatgctctgcttcaccgtcctc 350
            ||||| | ||| ||||||||||||||||||||||||||| |||| ||||||
Sbjct: 1709 acccattgggcattgatcctcaccctctcgatgctctgcctcacagtcctc 1659
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>gb|AY104402.1| Zea mays PCO137047 mRNA sequence
          Length = 2125

 Score =  109 bits (55), Expect = 6e-21
 Identities = 97/111 (87%)
 Strand = Plus / Minus

                                                                        
Query: 240  tgcttgtgagcgagctccttgagaacatttccgaggtcggactcgcccttggtgctcttg 299
            ||||||| ||| |||| |||||||||||| |||||||| | |||| ||||| || |||||
Sbjct: 1807 tgcttgtaagccagcttcttgagaacattgccgaggtcagcctcggccttgatgttcttg 1748

                                                               
Query: 300  acccacttggccttgatcctcaccctctcgatgctctgcttcaccgtcctc 350
            ||||| | ||| ||||||||||||||||||||||||||| |||| ||||||
Sbjct: 1747 acccattgggcattgatcctcaccctctcgatgctctgcctcacagtcctc 1697
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>ref|XM_464667.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3020

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 83/96 (86%)
 Strand = Plus / Minus

                                                                        
Query: 255  tccttgagaacatttccgaggtcggactcgcccttggtgctcttgacccacttggccttg 314
            |||||||| ||||| || ||||  | |||| || |||||||||  ||||| ||||| |||
Sbjct: 2723 tccttgaggacattgcccaggttagcctcggccctggtgctctccacccatttggcattg 2664

                                                
Query: 315  atcctcaccctctcgatgctctgcttcaccgtcctc 350
            |||||||| |||||||||||||||||||||||||||
Sbjct: 2663 atcctcactctctcgatgctctgcttcaccgtcctc 2628
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 83/96 (86%)
 Strand = Plus / Minus

                                                                           
Query: 255     tccttgagaacatttccgaggtcggactcgcccttggtgctcttgacccacttggccttg 314
               |||||||| ||||| || ||||  | |||| || |||||||||  ||||| ||||| |||
Sbjct: 6605319 tccttgaggacattgcccaggttagcctcggccctggtgctctccacccatttggcattg 6605260

                                                   
Query: 315     atcctcaccctctcgatgctctgcttcaccgtcctc 350
               |||||||| |||||||||||||||||||||||||||
Sbjct: 6605259 atcctcactctctcgatgctctgcttcaccgtcctc 6605224
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>dbj|AP004996.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0027A02
          Length = 140402

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 83/96 (86%)
 Strand = Plus / Minus

                                                                         
Query: 255   tccttgagaacatttccgaggtcggactcgcccttggtgctcttgacccacttggccttg 314
             |||||||| ||||| || ||||  | |||| || |||||||||  ||||| ||||| |||
Sbjct: 39694 tccttgaggacattgcccaggttagcctcggccctggtgctctccacccatttggcattg 39635

                                                 
Query: 315   atcctcaccctctcgatgctctgcttcaccgtcctc 350
             |||||||| |||||||||||||||||||||||||||
Sbjct: 39634 atcctcactctctcgatgctctgcttcaccgtcctc 39599
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>dbj|AK066996.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013089H24, full
            insert sequence
          Length = 3020

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 83/96 (86%)
 Strand = Plus / Minus

                                                                        
Query: 255  tccttgagaacatttccgaggtcggactcgcccttggtgctcttgacccacttggccttg 314
            |||||||| ||||| || ||||  | |||| || |||||||||  ||||| ||||| |||
Sbjct: 2723 tccttgaggacattgcccaggttagcctcggccctggtgctctccacccatttggcattg 2664

                                                
Query: 315  atcctcaccctctcgatgctctgcttcaccgtcctc 350
            |||||||| |||||||||||||||||||||||||||
Sbjct: 2663 atcctcactctctcgatgctctgcttcaccgtcctc 2628
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>dbj|AK060032.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-H06, full
           insert sequence
          Length = 977

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 83/96 (86%)
 Strand = Plus / Minus

                                                                       
Query: 255 tccttgagaacatttccgaggtcggactcgcccttggtgctcttgacccacttggccttg 314
           |||||||| ||||| || ||||  | |||| || |||||||||  ||||| ||||| |||
Sbjct: 680 tccttgaggacattgcccaggttagcctcggccctggtgctctccacccatttggcattg 621

                                               
Query: 315 atcctcaccctctcgatgctctgcttcaccgtcctc 350
           |||||||| |||||||||||||||||||||||||||
Sbjct: 620 atcctcactctctcgatgctctgcttcaccgtcctc 585
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>gb|AC121961.2| Mus musculus BAC clone RP24-255E8 from 10, complete sequence
          Length = 162752

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 8      acacctcctcatttgtgaacag 29
              ||||||||||||||||||||||
Sbjct: 105909 acacctcctcatttgtgaacag 105930
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>gb|AF220365.2|AF220365 Mus musculus nucleolar RNA helicase II/Gu (ddx21) gene, complete cds
          Length = 23703

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 8    acacctcctcatttgtgaacag 29
            ||||||||||||||||||||||
Sbjct: 6194 acacctcctcatttgtgaacag 6173
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>ref|XM_450614.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2984

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 302  ccacttggccttgatcctcaccctctcgatgctctgcttca 342
            |||| |||| ||||||  ||||||||||| |||||||||||
Sbjct: 2548 ccacctggcgttgatcagcaccctctcgaggctctgcttca 2508
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>gb|BT013806.1| Lycopersicon esculentum clone 132727F, mRNA sequence
          Length = 2861

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 321  accctctcgatgctctgcttcaccgtcct 349
            |||||||| ||||||||||||| ||||||
Sbjct: 2564 accctctcaatgctctgcttcaacgtcct 2536
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>emb|AL079337.13|HSJ813H11 Human DNA sequence from clone RP4-813H11 on chromosome 20p11.23-12.3
            Contains STSs and GSSs, complete sequence
          Length = 37323

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 33   gagtagtttccagagaaacaa 53
            |||||||||||||||||||||
Sbjct: 4454 gagtagtttccagagaaacaa 4474
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>emb|AL078638.9|HSA535K18 Human DNA sequence from clone RP11-535K18 on chromosome Xq26.2-27.1
              Contains the FHL1 gene for four and a half LIM domains 1,
              the gene for a novel protein (FLJ12694), a serine/threonine
              kinase 24 (STE20 homolog, yeast) (STK24) pseudogene, the 5'
              end of the GPR112 gene for G protein-coupled receptor 112
              and two CpG islands, complete sequence
          Length = 182408

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 13     tcctcatttgtgaacagaggg 33
              |||||||||||||||||||||
Sbjct: 120665 tcctcatttgtgaacagaggg 120685
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>dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete genome
          Length = 2696255

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 163     gctcagtcaaaccagcaccac 183
               |||||||||||||||||||||
Sbjct: 1031023 gctcagtcaaaccagcaccac 1031043
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                         
Query: 302      ccacttggccttgatcctcaccctctcgatgctctgcttca 342
                |||| |||| ||||||  ||||||||||| |||||||||||
Sbjct: 11797072 ccacctggcgttgatcagcaccctctcgaggctctgcttca 11797032
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>dbj|AP005572.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1506_A04
          Length = 114998

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                      
Query: 302   ccacttggccttgatcctcaccctctcgatgctctgcttca 342
             |||| |||| ||||||  ||||||||||| |||||||||||
Sbjct: 39890 ccacctggcgttgatcagcaccctctcgaggctctgcttca 39850
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>dbj|AK068165.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013134N07, full
            insert sequence
          Length = 2985

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 302  ccacttggccttgatcctcaccctctcgatgctctgcttca 342
            |||| |||| ||||||  ||||||||||| |||||||||||
Sbjct: 2549 ccacctggcgttgatcagcaccctctcgaggctctgcttca 2509
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>gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome
          Length = 2695903

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 163    gctcagtcaaaccagcaccac 183
              |||||||||||||||||||||
Sbjct: 589854 gctcagtcaaaccagcaccac 589834
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>gb|AC146131.4| Pan troglodytes BAC clone RP43-4F15 from 7, complete sequence
          Length = 179576

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 42    ccagagaaacaaacagcacc 61
             ||||||||||||||||||||
Sbjct: 84523 ccagagaaacaaacagcacc 84542
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>gb|AC024730.7| Homo sapiens BAC clone RP11-422E4 from 7, complete sequence
          Length = 151198

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 42     ccagagaaacaaacagcacc 61
              ||||||||||||||||||||
Sbjct: 121701 ccagagaaacaaacagcacc 121720
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>gb|AC116478.14| Mus musculus chromosome 8, clone RP23-396E23, complete sequence
          Length = 193468

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 42     ccagagaaacaaacagcacc 61
              ||||||||||||||||||||
Sbjct: 154688 ccagagaaacaaacagcacc 154669
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>gb|AC013285.10| Homo sapiens chromosome 10 clone RP11-143D9, complete sequence
          Length = 202500

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 42    ccagagaaacaaacagcacc 61
             ||||||||||||||||||||
Sbjct: 86280 ccagagaaacaaacagcacc 86299
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>emb|CR847515.10| Zebrafish DNA sequence from clone DKEYP-60A7 in linkage group 9, complete
              sequence
          Length = 153947

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 2      aaacaaacacctcctcattt 21
              ||||||||||||||||||||
Sbjct: 111933 aaacaaacacctcctcattt 111952
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>emb|BX276094.4| Human DNA sequence from clone RP11-156J5 on chromosome 10, complete
             sequence
          Length = 58437

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 42    ccagagaaacaaacagcacc 61
             ||||||||||||||||||||
Sbjct: 20311 ccagagaaacaaacagcacc 20292
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>gb|AC138174.9| Mus musculus, clone RP24-198I22, complete sequence
          Length = 177516

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 119   tttattattaccatattatt 138
             ||||||||||||||||||||
Sbjct: 88583 tttattattaccatattatt 88564
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>emb|BX901956.4| Zebrafish DNA sequence from clone CH211-284C12 in linkage group 3,
             complete sequence
          Length = 197042

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 301   cccacttggccttgatcctc 320
             ||||||||||||||||||||
Sbjct: 10539 cccacttggccttgatcctc 10520
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>gb|AC156993.3| Mus musculus chromosome 8, clone RP23-79L16, complete sequence
          Length = 145880

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 42    ccagagaaacaaacagcacc 61
             ||||||||||||||||||||
Sbjct: 82727 ccagagaaacaaacagcacc 82746
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>gb|AY527062.1| Mytilus edulis 18S ribosomal RNA gene, partial sequence
          Length = 1823

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 282 tcgcccttggtgctcttgac 301
           ||||||||||||||||||||
Sbjct: 716 tcgcccttggtgctcttgac 735
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>gb|AC134763.4| Rattus norvegicus  BAC CH230-221M14 (Children's Hospital Oakland Research
              Institute Rat (BN/SsNHsd/MCW) BAC library) complete
              sequence
          Length = 222524

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 177    gcaccacagggaagagggctgaat 200
              ||||||||||| ||||||||||||
Sbjct: 120255 gcaccacagggcagagggctgaat 120232
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 18       atttgtgaacagagggagtagttt 41
                ||||||| ||||||||||||||||
Sbjct: 37622364 atttgtggacagagggagtagttt 37622387
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>emb|BX005315.7| Zebrafish DNA sequence from clone DKEY-79E6, complete sequence
          Length = 130903

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 119  tttattattaccatattatt 138
            ||||||||||||||||||||
Sbjct: 8611 tttattattaccatattatt 8630
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>dbj|AB201231.1| Musculista senhousia gene for 18S ribosomal RNA, partial sequence
          Length = 1740

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 282 tcgcccttggtgctcttgac 301
           ||||||||||||||||||||
Sbjct: 670 tcgcccttggtgctcttgac 689
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>dbj|AP003286.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0677H08
          Length = 178830

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 18    atttgtgaacagagggagtagttt 41
             ||||||| ||||||||||||||||
Sbjct: 82838 atttgtggacagagggagtagttt 82861
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>gb|AF124207.1|AF124207 Musculus senhousei 18S ribosomal RNA gene, partial sequence
          Length = 1778

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 282 tcgcccttggtgctcttgac 301
           ||||||||||||||||||||
Sbjct: 687 tcgcccttggtgctcttgac 706
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>gb|AF124206.1|AF124206 Musculus discors 18S ribosomal RNA gene, partial sequence
          Length = 1782

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 282 tcgcccttggtgctcttgac 301
           ||||||||||||||||||||
Sbjct: 696 tcgcccttggtgctcttgac 715
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>gb|L33448.1|MSLSRRNAA Mytilus edulis 18S small subunit ribosomal RNA gene, complete
           sequence
          Length = 1827

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 282 tcgcccttggtgctcttgac 301
           ||||||||||||||||||||
Sbjct: 717 tcgcccttggtgctcttgac 736
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>gb|L33449.1|MSLSRRNAB Mytilus californianus 18S small subunit ribosomal RNA gene,
           complete sequence
          Length = 1825

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 282 tcgcccttggtgctcttgac 301
           ||||||||||||||||||||
Sbjct: 715 tcgcccttggtgctcttgac 734
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>gb|L33451.1|MSLSRRNAC Mytilus galloprovincialis isolate Morgat, Bay of Douarnenez, West
           Brittany, France 18S small subunit ribosomal RNA gene,
           complete sequence
          Length = 1826

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 282 tcgcccttggtgctcttgac 301
           ||||||||||||||||||||
Sbjct: 716 tcgcccttggtgctcttgac 735
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>gb|L33453.1|MSLSRRNAE Mytilus trossulus strain Pacific strain 1 18S small subunit
           ribosomal RNA gene, complete sequence
          Length = 1827

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 282 tcgcccttggtgctcttgac 301
           ||||||||||||||||||||
Sbjct: 717 tcgcccttggtgctcttgac 736
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>gb|L33454.1|MSLSRRNAF Mytilus trossulus strain Pacific strain 2 18S small subunit
           ribosomal RNA gene, complete sequence
          Length = 1827

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 282 tcgcccttggtgctcttgac 301
           ||||||||||||||||||||
Sbjct: 717 tcgcccttggtgctcttgac 736
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>gb|L33455.1|MSLSRRNAG Mytilus trossulus strain Pacific strain 3 18S small subunit
           ribosomal RNA gene, complete sequence
          Length = 1826

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 282 tcgcccttggtgctcttgac 301
           ||||||||||||||||||||
Sbjct: 716 tcgcccttggtgctcttgac 735
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>emb|AL929222.6| Zebrafish DNA sequence from clone DKEY-31N5, complete sequence
          Length = 212599

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 301    cccacttggccttgatcctc 320
              ||||||||||||||||||||
Sbjct: 203503 cccacttggccttgatcctc 203484
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>emb|AJ227881.1|HSA227881 Homo sapiens partial mRNA; ID LG141-8A
          Length = 563

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 42  ccagagaaacaaacagcacc 61
           ||||||||||||||||||||
Sbjct: 293 ccagagaaacaaacagcacc 274
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>emb|AJ227880.1|HSA227880 Homo sapiens partial mRNA; ID LG141-7C
          Length = 350

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 42  ccagagaaacaaacagcacc 61
           ||||||||||||||||||||
Sbjct: 296 ccagagaaacaaacagcacc 277
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>emb|AL805977.2| Human DNA sequence from clone RP11-491O20 on chromosome 6, complete
              sequence
          Length = 174830

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 42     ccagagaaacaaacagcacc 61
              ||||||||||||||||||||
Sbjct: 115247 ccagagaaacaaacagcacc 115228
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>emb|CR762426.15| Zebrafish DNA sequence from clone DKEY-54K9 in linkage group 1,
             complete sequence
          Length = 164460

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 35    gtagtttccagagaaacaaa 54
             ||||||||||||||||||||
Sbjct: 41617 gtagtttccagagaaacaaa 41636
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>dbj|AP001561.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-732G1, complete
              sequences
          Length = 195800

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 173    accagcaccacagggaagag 192
              ||||||||||||||||||||
Sbjct: 165694 accagcaccacagggaagag 165675
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>emb|AL928958.15| Mouse DNA sequence from clone RP23-344N23 on chromosome 2, complete
              sequence
          Length = 163351

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 38     gtttccagagaaacaaacag 57
              ||||||||||||||||||||
Sbjct: 157824 gtttccagagaaacaaacag 157805
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>gb|DQ310715.1| Mytella strigata 18S ribosomal RNA gene, partial sequence
          Length = 415

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 282 tcgcccttggtgctcttgac 301
           ||||||||||||||||||||
Sbjct: 125 tcgcccttggtgctcttgac 144
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>emb|X90960.1|AN18SRRNA A.noae 18S ribosomal RNA gene
          Length = 1782

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 282 tcgcccttggtgctcttgac 301
           ||||||||||||||||||||
Sbjct: 712 tcgcccttggtgctcttgac 731
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>emb|X91403.1|AGEL18S A.gelatinosum 18S ribosomal RNA gene
          Length = 1813

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 282 tcgcccttggtgctcttgac 301
           ||||||||||||||||||||
Sbjct: 714 tcgcccttggtgctcttgac 733
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>gb|L24490.1|MSLMRNAB Mytilus trossulus 18S ribosomal RNA (18S rRNA)
          Length = 1826

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 282 tcgcccttggtgctcttgac 301
           ||||||||||||||||||||
Sbjct: 716 tcgcccttggtgctcttgac 735
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>gb|L24489.1|MSLMRNAA Mytilus edulis 18S ribosomal RNA (18SrRNA)
          Length = 1826

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 282 tcgcccttggtgctcttgac 301
           ||||||||||||||||||||
Sbjct: 717 tcgcccttggtgctcttgac 736


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,880,372
Number of Sequences: 3902068
Number of extensions: 2880372
Number of successful extensions: 62497
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 62312
Number of HSP's gapped (non-prelim): 185
length of query: 350
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 328
effective length of database: 17,147,199,772
effective search space: 5624281525216
effective search space used: 5624281525216
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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