ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl53e01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1HIRA_MOUSE (Q61666) HIRA protein (TUP1-like enhancer of split pr... 28 5.5
2YAEC_SCHPO (Q09852) Putative inorganic phosphate transporter C23... 28 7.2
3ATG26_CRYNE (Q5KK25) Sterol 3-beta-glucosyltransferase (EC 2.4.1... 28 7.2
4VILI4_ARATH (O65570) Villin-4 28 7.2
5DP2L_ARCFU (O28552) DNA polymerase II large subunit (EC 2.7.7.7)... 27 9.3
6NOS_DROME (Q27571) Nitric-oxide synthase (EC 1.14.13.39) (dNOS) 27 9.3

>HIRA_MOUSE (Q61666) HIRA protein (TUP1-like enhancer of split protein 1)|
          Length = 1015

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
 Frame = +2

Query: 251 WNL---LVSPCDLAGSTTH--QGFYCPSGRQLLSRSSFNRGG 361
           W L   +  PCD  G TTH  +  + P G  L+S  + N  G
Sbjct: 206 WQLETSITKPCDECGGTTHVLRLSWSPDGHYLVSAHAMNNSG 247



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>YAEC_SCHPO (Q09852) Putative inorganic phosphate transporter C23D3.12|
          Length = 559

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +2

Query: 200 VQRSGKKKVHHGLW*WYWN 256
           V R G  K H G W WY+N
Sbjct: 538 VLRGGNGKTHQGRWSWYFN 556



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>ATG26_CRYNE (Q5KK25) Sterol 3-beta-glucosyltransferase (EC 2.4.1.173)|
           (Autophagy-related protein 26)
          Length = 1585

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -1

Query: 366 PPPPLLNDDLESSWRPEGQ*KP 301
           PPPP +NDD   +WRP    KP
Sbjct: 718 PPPPSMNDDAR-NWRPSWIRKP 738



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>VILI4_ARATH (O65570) Villin-4|
          Length = 974

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -3

Query: 280 QITRTYQQIPVPSPKSMMNLFFSTSLYIKLK 188
           +I R    IP P PKS +  FF+   YI LK
Sbjct: 22  EIWRIENFIPTPIPKSSIGKFFTGDSYIVLK 52



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>DP2L_ARCFU (O28552) DNA polymerase II large subunit (EC 2.7.7.7) (Pol II)|
          Length = 1143

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 272 CDLAGSTTHQGFYCPSGR 325
           CD+ G  T Q +YCPS R
Sbjct: 663 CDVCGELTEQLYYCPSCR 680



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>NOS_DROME (Q27571) Nitric-oxide synthase (EC 1.14.13.39) (dNOS)|
          Length = 1349

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +1

Query: 124 LSYIGXXXXXXXXXXQLMHMGFLILCTEK-WKKKGSSWTLV 243
           +SY G            M++ F  +CT+  WK KGS W ++
Sbjct: 393 ISYAGYKQADGKIIGDPMNVEFTEVCTKLGWKSKGSEWDIL 433


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,924,346
Number of Sequences: 219361
Number of extensions: 1239202
Number of successful extensions: 2348
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2347
length of database: 80,573,946
effective HSP length: 97
effective length of database: 59,295,929
effective search space used: 1423102296
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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