>YMV6_YEAST (Q04748) Hypothetical 104.7 kDa protein in NCA1-HMS1 intergenic|
           region
          Length = 898

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 122 ISPTLQPSEL*SSSAGQKRGRPCATYSRRIASRP 223
           I+P L+  +  SS +      PC  Y+RRI ++P
Sbjct: 658 INPLLESKQQVSSESSLSTSNPCRFYNRRIITKP 691

>ADEN_ADEF1 (Q9IIH4) Adenain (EC 3.4.22.39) (Endoprotease) (Late L3 23 kDa|
           protein)
          Length = 204

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 25  VRLASNTPPTQLYSSPSLFLTHTHTK 102
           + L    PPT+L+SS  ++LTH + K
Sbjct: 146 IDLVDGIPPTKLHSSYGIYLTHCNQK 171

>CRTI_STRGR (P54981) Phytoene dehydrogenase (EC 1.14.99.-) (Phytoene|
           desaturase)
          Length = 507

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 26/90 (28%), Positives = 36/90 (40%), Gaps = 2/90 (2%)
 Frame = +1

Query: 19  IQVRLASNTP--PTQLYSSPSLFLTHTHTKHTSPPAHFAHLATVRTLEFVGGAKTRAPLR 192
           +  RL   TP  P  L  SPS  + HT T  T P    AH     T+ F  GA  +    
Sbjct: 286 VSYRLLGRTPHRPLPLRHSPSAVILHTGTDRTWP--DLAH----HTISF--GAAWKNTFH 337

Query: 193 NLLTANRQQTVRTRYMPQPCRREK*IAKPG 282
            L    R  +  +  + +P   +  +A PG
Sbjct: 338 ELTRTGRLMSDPSLLITRPTATDPSLAPPG 367

>SKEL_DROME (Q9GPJ1) Protein skeletor|
          Length = 743

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = +1

Query: 40  NTPPTQLYSSPSLFL--THTHTKHTSPPA 120
           N  PT++ S P + L  TH HT + SP A
Sbjct: 91  NVTPTEISSRPEILLGETHAHTLNASPSA 119

>Y1257_METJA (Q58654) Hypothetical protein MJ1257|
          Length = 349

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 16/48 (33%), Positives = 19/48 (39%)
 Frame = +1

Query: 13  KSIQVRLASNTPPTQLYSSPSLFLTHTHTKHTSPPAHFAHLATVRTLE 156
           K I   +   T  T LY   SLFLT    KH     +  H    R L+
Sbjct: 260 KDINEEIDLITNDTNLYPDESLFLTLKFAKHLKTNGYIIHTLKARNLK 307

>GRT1_SCHPO (Q9C469) Zinc finger protein grt1|
          Length = 648

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -1

Query: 134 RWAKCAGGDVCFVC 93
           R  KC+GGDVCF C
Sbjct: 20  RKVKCSGGDVCFEC 33

>RUVB_LEIXX (Q6AFB4) Holliday junction ATP-dependent DNA helicase ruvB (EC|
           3.6.1.-)
          Length = 347

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 17/26 (65%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = +1

Query: 145 RTL-EFVGGAKTRAPLRNLLTANRQQ 219
           RTL EFVG AK R  L+ LLTA R Q
Sbjct: 27  RTLAEFVGQAKVRGQLQLLLTAARMQ 52

>COAC_YEAST (Q00955) Acetyl-CoA carboxylase (EC 6.4.1.2) (ACC) [Includes:|
           Biotin carboxylase (EC 6.3.4.14)]
          Length = 2233

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = +1

Query: 82  LTHTHTKHTSPPAHFAHLATVRTLEFVGGAKTRAPLRNLLTANRQQTVRTRYM 240
           +T+   +HT  P HF  L TV  LE        +PLR+ + ++   TV ++ +
Sbjct: 18  ITNYSERHTELPGHFIGLNTVDKLE-------ESPLRDFVKSHGGHTVISKIL 63

>SYD_HAHCH (Q2SCK8) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA|
           ligase) (AspRS)
          Length = 590

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 1/76 (1%)
 Frame = +3

Query: 60  VQLPIPLLDTHTHKTHITSCAFRPPCNRPNSRVRR-RGKNEGALAQLTHGESPADRPNSL 236
           +++P+ L+D     T+++   F  P N P SRV   R    G L      +         
Sbjct: 288 LRIPLELVDVGDLLTNVSFNVFSGPANDPKSRVAALRLPKGGELLSRKQIDDYTKFVGIY 347

Query: 237 HAPALPERKINSKTGG 284
            A  LP  K+N K  G
Sbjct: 348 GAKGLPYIKVNEKAKG 363

>SAE2_YEAST (P46946) Protein SAE2|
          Length = 345

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +3

Query: 15  KHSSQISIQHPSNSTVQLPIPLLDTHTHKTHITSCAFRPPCNRPNS 152
           K S+++  ++ +  TVQLP+  +  + HK  I+   F  P N  N+
Sbjct: 98  KESAEVHYRNENKHTVQLPLVTMPPNRHKRKISE--FSSPLNGLNN 141


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,314,197
Number of Sequences: 219361
Number of extensions: 1082748
Number of successful extensions: 3082
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3081
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 1391514312
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)