>SYA_ARATH (P36428) Alanyl-tRNA synthetase, mitochondrial precursor (EC 6.1.1.7)|
            (Alanine--tRNA ligase) (AlaRS)
          Length = 1003

 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 19/32 (59%), Positives = 27/32 (84%)
 Frame = -1

Query: 370  GKNGLAQGQGSDASRVKEAMELATQIASMKLS 275
            GK GLA GQG+DAS+V+ A+++A+  ASMKL+
Sbjct: 972  GKGGLASGQGTDASQVQAALDMASSFASMKLN 1003

>SYA_THETN (Q8RAH4) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)|
           (AlaRS)
          Length = 878

 Score = 32.3 bits (72), Expect = 0.29
 Identities = 15/32 (46%), Positives = 22/32 (68%)
 Frame = -1

Query: 373 GGKNGLAQGQGSDASRVKEAMELATQIASMKL 278
           GG+  +AQG G + S+VKEA+E A +I   +L
Sbjct: 845 GGRAEMAQGTGKNISKVKEALEKAIEIVKGQL 876

>SYA_PSEAE (Q9I553) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)|
           (AlaRS)
          Length = 874

 Score = 31.2 bits (69), Expect = 0.64
 Identities = 17/40 (42%), Positives = 25/40 (62%)
 Frame = -1

Query: 373 GGKNGLAQGQGSDASRVKEAMELATQIASMKLS*FVETGL 254
           GG+  +AQG G+DA+++ EA+ LA +        FVE GL
Sbjct: 843 GGRPDMAQGGGTDAAKLDEALALAQR--------FVEQGL 874

>CAC1I_RAT (Q9Z0Y8) Voltage-dependent T-type calcium channel alpha-1I subunit|
           (Voltage-gated calcium channel alpha subunit Cav3.3)
           (CaVT.3)
          Length = 2201

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 17/65 (26%), Positives = 35/65 (53%)
 Frame = -3

Query: 257 SSYILSGCLMVVLTLLSQIVMREHKIIHENQLEAVSIFTLQDVV*SSQLSCNYSLVYQME 78
           S ++++ CL+V+ T  S+   REH+++ E +   +S  T+      ++    Y  ++Q  
Sbjct: 384 SFFMINLCLVVIATQFSETKQREHRLMLEQRQRYLSSSTVASY---AEPGDCYEEIFQYV 440

Query: 77  CYI*R 63
           C+I R
Sbjct: 441 CHILR 445

>CAC1I_HUMAN (Q9P0X4) Voltage-dependent T-type calcium channel alpha-1I subunit|
           (Voltage-gated calcium channel alpha subunit Cav3.3)
           (Ca(v)3.3)
          Length = 2223

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 17/65 (26%), Positives = 35/65 (53%)
 Frame = -3

Query: 257 SSYILSGCLMVVLTLLSQIVMREHKIIHENQLEAVSIFTLQDVV*SSQLSCNYSLVYQME 78
           S ++++ CL+V+ T  S+   REH+++ E +   +S  T+      ++    Y  ++Q  
Sbjct: 386 SFFMINLCLVVIATQFSETKQREHRLMLEQRQRYLSSSTVASY---AEPGDCYEEIFQYV 442

Query: 77  CYI*R 63
           C+I R
Sbjct: 443 CHILR 447

>SYA_BIFLO (Q8G5W9) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)|
           (AlaRS)
          Length = 893

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = -1

Query: 373 GGKNGLAQGQGSDASRVKEAME 308
           GGK   AQG G DAS++ EA+E
Sbjct: 863 GGKPDFAQGGGVDASKIDEALE 884

>SYA_PONPY (Q5RC02) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)|
            (AlaRS)
          Length = 968

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -1

Query: 373  GGKNGLAQGQGSDASRVKEAMELATQIASMKL 278
            GGK+  AQ  G +   ++EA++LAT  A ++L
Sbjct: 932  GGKDVSAQATGKNVGCLQEALQLATSFAQLRL 963

>SYA_MOUSE (Q8BGQ7) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)|
            (AlaRS)
          Length = 968

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -1

Query: 373  GGKNGLAQGQGSDASRVKEAMELATQIASMKL 278
            GGK+  AQ  G +   ++EA++LAT  A ++L
Sbjct: 932  GGKDMSAQATGKNVGCLQEALQLATSFAQLRL 963

>SYA_HUMAN (P49588) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)|
            (AlaRS) (NY-REN-42 antigen)
          Length = 968

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -1

Query: 373  GGKNGLAQGQGSDASRVKEAMELATQIASMKL 278
            GGK+  AQ  G +   ++EA++LAT  A ++L
Sbjct: 932  GGKDVSAQATGKNVGCLQEALQLATSFAQLRL 963

>SYA_RHOBA (Q7UFH9) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)|
            (AlaRS)
          Length = 945

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -1

Query: 373  GGKNGLAQGQGSDASRVKEAMELATQIASMKL 278
            GG+  +AQ  G DAS++ EA++ A +  + KL
Sbjct: 913  GGRPDMAQAGGKDASKLPEALQQARETMTEKL 944

>K0286_MOUSE (Q6ZQE4) Protein KIAA0286|
          Length = 437

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 14/61 (22%), Positives = 28/61 (45%)
 Frame = -3

Query: 362 WSCPGPGK*CFSGQGGNGACYPDSFDEAELIC*DWSSYILSGCLMVVLTLLSQIVMREHK 183
           WS  GPG  C+   GG GA               W   +++GC++     ++ ++++E +
Sbjct: 10  WSAVGPGPRCWGAGGGGGA--------------TWLLLVVAGCVVCGSADVNVVMLQESQ 55

Query: 182 I 180
           +
Sbjct: 56  V 56

>STAB1_HUMAN (Q9NY15) Stabilin-1 precursor (FEEL-1 protein) (MS-1 antigen)|
          Length = 2570

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = +2

Query: 233  SSHLICMKTSLN-KSAQLHRSYLGSKLHCLLDPRSITSLALGK 358
            S H  C+ T LN +  + H  Y+G  L CL +        LG+
Sbjct: 2145 SEHANCLSTGLNTRRCECHAGYVGDGLQCLEESEPPVDRCLGQ 2187

>KHSE_BACSU (P04948) Homoserine kinase (EC 2.7.1.39) (HSK) (HK)|
          Length = 309

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 13/28 (46%), Positives = 20/28 (71%)
 Frame = -1

Query: 358 LAQGQGSDASRVKEAMELATQIASMKLS 275
           LA+G GS A+ +  A+ELA ++  +KLS
Sbjct: 92  LARGLGSSAAAIVAAIELADELCGLKLS 119

>HYIN1_AGRVI (Q04557) Indoleacetamide hydrolase (EC 3.5.1.-) (IAH)|
           (Indole-3-acetamide hydrolase)
          Length = 462

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 14/30 (46%), Positives = 22/30 (73%)
 Frame = +3

Query: 255 RPVSTNQLSFIEAIWVASSIASLTREASLP 344
           R ++TNQ++F+EA     ++A LTR+ SLP
Sbjct: 265 RRLATNQMTFVEA--DIPNVAELTRKVSLP 292

>SYA_WOLSU (Q7MAD3) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)|
           (AlaRS)
          Length = 855

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -1

Query: 373 GGKNGLAQGQGSDASRVKEAMELATQIASMKLS 275
           GG++  AQ  G DAS+  EA++ A   A  +L+
Sbjct: 823 GGRDDFAQAGGKDASKADEALQSAKNYALERLA 855

>SYA_SYNY3 (P74423) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)|
           (AlaRS)
          Length = 877

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -1

Query: 373 GGKNGLAQGQGSDASRVKEAMELATQ 296
           GG+  LAQ  G DAS++ EA+  A Q
Sbjct: 845 GGRPNLAQAGGRDASKLPEALATAKQ 870

>SYA_OCEIH (Q8EPS9) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)|
           (AlaRS)
          Length = 879

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 373 GGKNGLAQGQGSDASRVKEAMELATQ 296
           GG+  +AQ  G D S++KEA++   Q
Sbjct: 847 GGRPDMAQAGGKDPSKIKEALQSVEQ 872

>POLG_HCVEU (O39927) Genome polyprotein [Contains: Core protein p21 (Capsid|
           protein C) (p21); Core protein p19; Envelope
           glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2
           (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-)
           (p23); Serine protease/N
          Length = 3017

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 10/20 (50%), Positives = 17/20 (85%)
 Frame = -2

Query: 102 LQFGLSNGVLYLTNECNNST 43
           L +G S+G+ +LTN+C+NS+
Sbjct: 191 LTYGNSSGLYHLTNDCSNSS 210

>SYA_DEHSC (Q3ZWC3) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)|
           (AlaRS)
          Length = 871

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -1

Query: 373 GGKNGLAQGQGSDASRVKEAME 308
           GGK  +AQG G D S++ EA++
Sbjct: 844 GGKPNMAQGGGRDKSKLDEALQ 865

>SYA_SYNP6 (Q5N4B5) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)|
           (AlaRS)
          Length = 892

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 5/34 (14%)
 Frame = -1

Query: 373 GGKNGLAQGQGSDASRVKEAM-----ELATQIAS 287
           GG+  LAQ  G DAS++ EA+     +L T IAS
Sbjct: 859 GGRPNLAQAGGRDASKLPEAIAAALDQLKTAIAS 892

>SYA_CORJK (Q4JVF5) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)|
           (AlaRS)
          Length = 887

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 373 GGKNGLAQGQGSDASRVKEAME 308
           GGK  +AQG GSDA+ +   +E
Sbjct: 858 GGKPAMAQGSGSDAAGISAGIE 879


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,213,926
Number of Sequences: 219361
Number of extensions: 1012263
Number of successful extensions: 2215
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 2178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2214
length of database: 80,573,946
effective HSP length: 99
effective length of database: 58,857,207
effective search space used: 1412572968
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)