Clone Name | rbastl53d05 |
---|---|
Clone Library Name | barley_pub |
>gb|L37359.1|BLYLOXB Hordeum vulgare lipoxygenase (LoxB) mRNA, complete cds Length = 3003 Score = 817 bits (412), Expect = 0.0 Identities = 418/420 (99%) Strand = Plus / Minus Query: 6 tgaaaagaatgcgcacacgagtgcttattcatgcctcattgtcctcaccctatcaacatc 65 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2994 tgaaaagaatgcgcacacgagtgcttattcatgcctcattgtcctcaccctatcaacatc 2935 Query: 66 atctacgacacaatcatcattttccatcatccactaatccctggcaactaattaccgcaa 125 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2934 atctacgacacaatcatcattttccatcatccactaatccctggcaactaattaccgcaa 2875 Query: 126 ccacccagaagccaatgaaaagtaacacaatacaccttgcgagacacgaaccgatccatg 185 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2874 ccacccagaagccaatgaaaagtaacacaatacaccttgcgagacacgaaccgatccatg 2815 Query: 186 accagcggacggacgactaccgaaagaaggaaacaaagaccatgctcagctcaaatggag 245 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 2814 accagcggacggacgactaccgaaagaaggaaacaaagaccatgctcagctcagatggag 2755 Query: 246 acgctgttggggatgcccatggcggtgagccccatcgccttctccccgttggcgtccgac 305 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 2754 acgctgttggggatgcccatggcggtgagccccagcgccttctccccgttggcgtccgac 2695 Query: 306 gtgttggggtacagcagcatgtagggcatcttcacgggcccgttccggttcttgagcgcc 365 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2694 gtgttggggtacagcagcatgtagggcatcttcacgggcccgttccggttcttgagcgcc 2635 Query: 366 gggtccttgttcatgtcgaggatccgcttctcgatctccaccagccggctgccgaacctc 425 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2634 gggtccttgttcatgtcgaggatccgcttctcgatctccaccagccggctgccgaacctc 2575
>ref|XM_469412.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2686 Score = 188 bits (95), Expect = 1e-44 Identities = 167/191 (87%) Strand = Plus / Minus Query: 235 ctcaaatggagacgctgttggggatgcccatggcggtgagccccatcgccttctccccgt 294 |||| ||||||| |||||||||||||||||||||||||||||| |||||||| | Sbjct: 2447 ctcagatggagatgctgttggggatgcccatggcggtgagcccttggcccttctccttgg 2388 Query: 295 tggcgtccgacgtgttggggtacagcagcatgtagggcatcttcacgggcccgttccggt 354 || | ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct: 2387 tgacatccgacgtgttggggtacagcagcatgtacggcatcttcaccggcccgttccggt 2328 Query: 355 tcttgagcgccgggtccttgttcatgtcgaggatccgcttctcgatctccaccagccggc 414 |||||||||||| || ||||||||| |||||| |||||||| ||||||||||||| Sbjct: 2327 tcttgagcgccgagttgccgttcatgtccttgatccggttctcgatatccaccagccggc 2268 Query: 415 tgccgaacctc 425 ||||||||||| Sbjct: 2267 tgccgaacctc 2257
>ref|XM_469411.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3165 Score = 188 bits (95), Expect = 1e-44 Identities = 167/191 (87%) Strand = Plus / Minus Query: 235 ctcaaatggagacgctgttggggatgcccatggcggtgagccccatcgccttctccccgt 294 |||| ||||||| |||||||||||||||||||||||||||||| |||||||| | Sbjct: 2926 ctcagatggagatgctgttggggatgcccatggcggtgagcccttggcccttctccttgg 2867 Query: 295 tggcgtccgacgtgttggggtacagcagcatgtagggcatcttcacgggcccgttccggt 354 || | ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct: 2866 tgacatccgacgtgttggggtacagcagcatgtacggcatcttcaccggcccgttccggt 2807 Query: 355 tcttgagcgccgggtccttgttcatgtcgaggatccgcttctcgatctccaccagccggc 414 |||||||||||| || ||||||||| |||||| |||||||| ||||||||||||| Sbjct: 2806 tcttgagcgccgagttgccgttcatgtccttgatccggttctcgatatccaccagccggc 2747 Query: 415 tgccgaacctc 425 ||||||||||| Sbjct: 2746 tgccgaacctc 2736
>gb|AC093017.10| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0024B16 map S2606, complete sequence Length = 124140 Score = 188 bits (95), Expect = 1e-44 Identities = 167/191 (87%) Strand = Plus / Minus Query: 235 ctcaaatggagacgctgttggggatgcccatggcggtgagccccatcgccttctccccgt 294 |||| ||||||| |||||||||||||||||||||||||||||| |||||||| | Sbjct: 65817 ctcagatggagatgctgttggggatgcccatggcggtgagcccttggcccttctccttgg 65758 Query: 295 tggcgtccgacgtgttggggtacagcagcatgtagggcatcttcacgggcccgttccggt 354 || | ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct: 65757 tgacatccgacgtgttggggtacagcagcatgtacggcatcttcaccggcccgttccggt 65698 Query: 355 tcttgagcgccgggtccttgttcatgtcgaggatccgcttctcgatctccaccagccggc 414 |||||||||||| || ||||||||| |||||| |||||||| ||||||||||||| Sbjct: 65697 tcttgagcgccgagttgccgttcatgtccttgatccggttctcgatatccaccagccggc 65638 Query: 415 tgccgaacctc 425 ||||||||||| Sbjct: 65637 tgccgaacctc 65627 Score = 46.1 bits (23), Expect = 0.092 Identities = 29/31 (93%) Strand = Plus / Minus Query: 243 gagacgctgttggggatgcccatggcggtga 273 |||| |||||||||||||||| ||||||||| Sbjct: 47230 gagatgctgttggggatgcccttggcggtga 47200 Score = 40.1 bits (20), Expect = 5.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 350 ccggttcttgagcgccgggtccttgttcatgt 381 ||||||||||||| |||||||||||||||| Sbjct: 6076 ccggttcttgagcagggggtccttgttcatgt 6045
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 188 bits (95), Expect = 1e-44 Identities = 167/191 (87%) Strand = Plus / Minus Query: 235 ctcaaatggagacgctgttggggatgcccatggcggtgagccccatcgccttctccccgt 294 |||| ||||||| |||||||||||||||||||||||||||||| |||||||| | Sbjct: 27821687 ctcagatggagatgctgttggggatgcccatggcggtgagcccttggcccttctccttgg 27821628 Query: 295 tggcgtccgacgtgttggggtacagcagcatgtagggcatcttcacgggcccgttccggt 354 || | ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct: 27821627 tgacatccgacgtgttggggtacagcagcatgtacggcatcttcaccggcccgttccggt 27821568 Query: 355 tcttgagcgccgggtccttgttcatgtcgaggatccgcttctcgatctccaccagccggc 414 |||||||||||| || ||||||||| |||||| |||||||| ||||||||||||| Sbjct: 27821567 tcttgagcgccgagttgccgttcatgtccttgatccggttctcgatatccaccagccggc 27821508 Query: 415 tgccgaacctc 425 ||||||||||| Sbjct: 27821507 tgccgaacctc 27821497 Score = 46.1 bits (23), Expect = 0.092 Identities = 29/31 (93%) Strand = Plus / Minus Query: 240 atggagacgctgttggggatgcccatggcgg 270 ||||||| |||||||||||||||| |||||| Sbjct: 30026445 atggagatgctgttggggatgcccctggcgg 30026415 Score = 46.1 bits (23), Expect = 0.092 Identities = 29/31 (93%) Strand = Plus / Minus Query: 243 gagacgctgttggggatgcccatggcggtga 273 |||| |||||||||||||||| ||||||||| Sbjct: 27803100 gagatgctgttggggatgcccttggcggtga 27803070 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 235 ctcaaatggagacgctgttggggatgccc 263 ||||||||| || |||||||||||||||| Sbjct: 14300017 ctcaaatggtgatgctgttggggatgccc 14300045 Score = 40.1 bits (20), Expect = 5.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 350 ccggttcttgagcgccgggtccttgttcatgt 381 ||||||||||||| |||||||||||||||| Sbjct: 27761947 ccggttcttgagcagggggtccttgttcatgt 27761916
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 188 bits (95), Expect = 1e-44 Identities = 167/191 (87%) Strand = Plus / Minus Query: 235 ctcaaatggagacgctgttggggatgcccatggcggtgagccccatcgccttctccccgt 294 |||| ||||||| |||||||||||||||||||||||||||||| |||||||| | Sbjct: 27913011 ctcagatggagatgctgttggggatgcccatggcggtgagcccttggcccttctccttgg 27912952 Query: 295 tggcgtccgacgtgttggggtacagcagcatgtagggcatcttcacgggcccgttccggt 354 || | ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct: 27912951 tgacatccgacgtgttggggtacagcagcatgtacggcatcttcaccggcccgttccggt 27912892 Query: 355 tcttgagcgccgggtccttgttcatgtcgaggatccgcttctcgatctccaccagccggc 414 |||||||||||| || ||||||||| |||||| |||||||| ||||||||||||| Sbjct: 27912891 tcttgagcgccgagttgccgttcatgtccttgatccggttctcgatatccaccagccggc 27912832 Query: 415 tgccgaacctc 425 ||||||||||| Sbjct: 27912831 tgccgaacctc 27912821 Score = 46.1 bits (23), Expect = 0.092 Identities = 29/31 (93%) Strand = Plus / Minus Query: 240 atggagacgctgttggggatgcccatggcgg 270 ||||||| |||||||||||||||| |||||| Sbjct: 30117867 atggagatgctgttggggatgcccctggcgg 30117837 Score = 46.1 bits (23), Expect = 0.092 Identities = 29/31 (93%) Strand = Plus / Minus Query: 243 gagacgctgttggggatgcccatggcggtga 273 |||| |||||||||||||||| ||||||||| Sbjct: 27894424 gagatgctgttggggatgcccttggcggtga 27894394 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 235 ctcaaatggagacgctgttggggatgccc 263 ||||||||| || |||||||||||||||| Sbjct: 14294992 ctcaaatggtgatgctgttggggatgccc 14295020 Score = 40.1 bits (20), Expect = 5.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 350 ccggttcttgagcgccgggtccttgttcatgt 381 ||||||||||||| |||||||||||||||| Sbjct: 27853270 ccggttcttgagcagggggtccttgttcatgt 27853239
>dbj|AK105792.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-H08, full insert sequence Length = 1560 Score = 188 bits (95), Expect = 1e-44 Identities = 167/191 (87%) Strand = Plus / Minus Query: 235 ctcaaatggagacgctgttggggatgcccatggcggtgagccccatcgccttctccccgt 294 |||| ||||||| |||||||||||||||||||||||||||||| |||||||| | Sbjct: 1333 ctcagatggagatgctgttggggatgcccatggcggtgagcccttggcccttctccttgg 1274 Query: 295 tggcgtccgacgtgttggggtacagcagcatgtagggcatcttcacgggcccgttccggt 354 || | ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct: 1273 tgacatccgacgtgttggggtacagcagcatgtacggcatcttcaccggcccgttccggt 1214 Query: 355 tcttgagcgccgggtccttgttcatgtcgaggatccgcttctcgatctccaccagccggc 414 |||||||||||| || ||||||||| |||||| |||||||| ||||||||||||| Sbjct: 1213 tcttgagcgccgagttgccgttcatgtccttgatccggttctcgatatccaccagccggc 1154 Query: 415 tgccgaacctc 425 ||||||||||| Sbjct: 1153 tgccgaacctc 1143
>dbj|AK072869.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023143O17, full insert sequence Length = 2851 Score = 188 bits (95), Expect = 1e-44 Identities = 167/191 (87%) Strand = Plus / Minus Query: 235 ctcaaatggagacgctgttggggatgcccatggcggtgagccccatcgccttctccccgt 294 |||| ||||||| |||||||||||||||||||||||||||||| |||||||| | Sbjct: 2598 ctcagatggagatgctgttggggatgcccatggcggtgagcccttggcccttctccttgg 2539 Query: 295 tggcgtccgacgtgttggggtacagcagcatgtagggcatcttcacgggcccgttccggt 354 || | ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct: 2538 tgacatccgacgtgttggggtacagcagcatgtacggcatcttcaccggcccgttccggt 2479 Query: 355 tcttgagcgccgggtccttgttcatgtcgaggatccgcttctcgatctccaccagccggc 414 |||||||||||| || ||||||||| |||||| |||||||| ||||||||||||| Sbjct: 2478 tcttgagcgccgagttgccgttcatgtccttgatccggttctcgatatccaccagccggc 2419 Query: 415 tgccgaacctc 425 ||||||||||| Sbjct: 2418 tgccgaacctc 2408
>dbj|AK072689.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023143H13, full insert sequence Length = 3167 Score = 188 bits (95), Expect = 1e-44 Identities = 167/191 (87%) Strand = Plus / Minus Query: 235 ctcaaatggagacgctgttggggatgcccatggcggtgagccccatcgccttctccccgt 294 |||| ||||||| |||||||||||||||||||||||||||||| |||||||| | Sbjct: 2928 ctcagatggagatgctgttggggatgcccatggcggtgagcccttggcccttctccttgg 2869 Query: 295 tggcgtccgacgtgttggggtacagcagcatgtagggcatcttcacgggcccgttccggt 354 || | ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct: 2868 tgacatccgacgtgttggggtacagcagcatgtacggcatcttcaccggcccgttccggt 2809 Query: 355 tcttgagcgccgggtccttgttcatgtcgaggatccgcttctcgatctccaccagccggc 414 |||||||||||| || ||||||||| |||||| |||||||| ||||||||||||| Sbjct: 2808 tcttgagcgccgagttgccgttcatgtccttgatccggttctcgatatccaccagccggc 2749 Query: 415 tgccgaacctc 425 ||||||||||| Sbjct: 2748 tgccgaacctc 2738
>dbj|AK071121.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023079P11, full insert sequence Length = 1726 Score = 188 bits (95), Expect = 1e-44 Identities = 167/191 (87%) Strand = Plus / Minus Query: 235 ctcaaatggagacgctgttggggatgcccatggcggtgagccccatcgccttctccccgt 294 |||| ||||||| |||||||||||||||||||||||||||||| |||||||| | Sbjct: 1498 ctcagatggagatgctgttggggatgcccatggcggtgagcccttggcccttctccttgg 1439 Query: 295 tggcgtccgacgtgttggggtacagcagcatgtagggcatcttcacgggcccgttccggt 354 || | ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct: 1438 tgacatccgacgtgttggggtacagcagcatgtacggcatcttcaccggcccgttccggt 1379 Query: 355 tcttgagcgccgggtccttgttcatgtcgaggatccgcttctcgatctccaccagccggc 414 |||||||||||| || ||||||||| |||||| |||||||| ||||||||||||| Sbjct: 1378 tcttgagcgccgagttgccgttcatgtccttgatccggttctcgatatccaccagccggc 1319 Query: 415 tgccgaacctc 425 ||||||||||| Sbjct: 1318 tgccgaacctc 1308
>gb|DQ389164.1| Oryza sativa (japonica cultivar-group) dual positional specificity lipoxygenase mRNA, complete cds Length = 3154 Score = 180 bits (91), Expect = 2e-42 Identities = 166/191 (86%) Strand = Plus / Minus Query: 235 ctcaaatggagacgctgttggggatgcccatggcggtgagccccatcgccttctccccgt 294 |||| ||||||| |||||||||||||||||||||||||||||| |||||||| | Sbjct: 2920 ctcagatggagatgctgttggggatgcccatggcggtgagcccttggcccttctccttgg 2861 Query: 295 tggcgtccgacgtgttggggtacagcagcatgtagggcatcttcacgggcccgttccggt 354 || | ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct: 2860 tgacatccgacgtgttggggtacagcagcatgtacggcatcttcaccggcccgttccggt 2801 Query: 355 tcttgagcgccgggtccttgttcatgtcgaggatccgcttctcgatctccaccagccggc 414 |||||||||||| || ||||| ||| |||||| |||||||| ||||||||||||| Sbjct: 2800 tcttgagcgccgagttgccgttcacgtccttgatccggttctcgatatccaccagccggc 2741 Query: 415 tgccgaacctc 425 ||||||||||| Sbjct: 2740 tgccgaacctc 2730
>gb|AY111869.1| Zea mays CL452_-8 mRNA sequence Length = 568 Score = 137 bits (69), Expect = 3e-29 Identities = 166/193 (86%), Gaps = 4/193 (2%) Strand = Plus / Minus Query: 234 gctcaaatggagacgctgttggggatgcccatggcggtgagccccatcgcc-ttctcccc 292 ||||| ||||||| ||||||||| ||||||||||| ||||||||| ||||| ||||| || Sbjct: 369 gctcatatggagatgctgttgggaatgcccatggcagtgagcccc-tcgcccttctcgcc 311 Query: 293 gttggcgtccgacgtgttggggtacagcagcatgtagggcatcttcacgggcccgttccg 352 | || | |||||||||||||| |||||||||||||| ||||||| ||| ||||| ||||| Sbjct: 310 ggtgacatccgacgtgttgggatacagcagcatgtacggcatctccaccggccccttccg 251 Query: 353 gttcttgagcgccgggtccttgttcat-gtcgaggatccgcttctcgatctccaccagcc 411 |||||| | || |||| | |||||| ||| |||||||||||||||||||||||||| Sbjct: 250 gttcttcaacgtcgggctgtcgttcatcgtc-ctgatccgcttctcgatctccaccagcc 192 Query: 412 ggctgccgaacct 424 |||| |||||||| Sbjct: 191 ggcttccgaacct 179
>gb|AY103567.1| Zea mays PCO116252 mRNA sequence Length = 3135 Score = 113 bits (57), Expect = 5e-22 Identities = 108/125 (86%) Strand = Plus / Minus Query: 234 gctcaaatggagacgctgttggggatgcccatggcggtgagccccatcgccttctccccg 293 ||||| ||||||| ||||||||| ||||||||||| || |||||| |||||||| ||| Sbjct: 2902 gctcatatggagatgctgttgggaatgcccatggcagtaagcccctcggccttctcgccg 2843 Query: 294 ttggcgtccgacgtgttggggtacagcagcatgtagggcatcttcacgggcccgttccgg 353 | ||||||||||||||||||||||||||||||| ||||| | ||| ||||| |||||| Sbjct: 2842 gtaacgtccgacgtgttggggtacagcagcatgtacggcatttccacaggccccttccgg 2783 Query: 354 ttctt 358 ||||| Sbjct: 2782 ttctt 2778 Score = 40.1 bits (20), Expect = 5.7 Identities = 32/36 (88%) Strand = Plus / Minus Query: 386 gatccgcttctcgatctccaccagccggctgccgaa 421 |||||| ||||| |||| |||||||||||| ||||| Sbjct: 2750 gatccgattctcaatctgcaccagccggctcccgaa 2715
>gb|AY220737.1| Hordeum vulgare lipoxygenase 1 protein (LOXA) mRNA, partial cds Length = 1331 Score = 61.9 bits (31), Expect = 2e-06 Identities = 64/75 (85%) Strand = Plus / Minus Query: 306 gtgttggggtacagcagcatgtagggcatcttcacgggcccgttccggttcttgagcgcc 365 ||||||||||| |||||||||||||| | ||| | || ||||| |||||||||||| || Sbjct: 1019 gtgttggggtagagcagcatgtagggaaacttagccgggccgttgcggttcttgagctcc 960 Query: 366 gggtccttgttcatg 380 ||||| | ||||||| Sbjct: 959 gggtcatggttcatg 945 Score = 52.0 bits (26), Expect = 0.001 Identities = 35/38 (92%) Strand = Plus / Minus Query: 240 atggagacgctgttggggatgcccatggcggtgagccc 277 ||||||| |||||||||||||||| ||||||| ||||| Sbjct: 1082 atggagatgctgttggggatgcccttggcggtaagccc 1045
>gb|L35931.1|BLYLOXA Barley lipoxygenase 1 (LoxA) gene, complete cds Length = 2818 Score = 61.9 bits (31), Expect = 2e-06 Identities = 64/75 (85%) Strand = Plus / Minus Query: 306 gtgttggggtacagcagcatgtagggcatcttcacgggcccgttccggttcttgagcgcc 365 ||||||||||| |||||||||||||| | ||| | || ||||| |||||||||||| || Sbjct: 2590 gtgttggggtagagcagcatgtagggaaacttagccgggccgttgcggttcttgagctcc 2531 Query: 366 gggtccttgttcatg 380 ||||| | ||||||| Sbjct: 2530 gggtcatggttcatg 2516 Score = 52.0 bits (26), Expect = 0.001 Identities = 35/38 (92%) Strand = Plus / Minus Query: 240 atggagacgctgttggggatgcccatggcggtgagccc 277 ||||||| |||||||||||||||| ||||||| ||||| Sbjct: 2653 atggagatgctgttggggatgcccttggcggtaagccc 2616
>gb|U56406.1|HVU56406 Hordeum vulgare methyljasmonate-inducible lipoxygenase 2 mRNA, complete cds Length = 3054 Score = 60.0 bits (30), Expect = 6e-06 Identities = 33/34 (97%) Strand = Plus / Minus Query: 232 cagctcaaatggagacgctgttggggatgcccat 265 ||||||||||||||| |||||||||||||||||| Sbjct: 2920 cagctcaaatggagatgctgttggggatgcccat 2887
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 58.0 bits (29), Expect = 2e-05 Identities = 32/33 (96%) Strand = Plus / Minus Query: 233 agctcaaatggagacgctgttggggatgcccat 265 |||||||||||||| |||||||||||||||||| Sbjct: 22970463 agctcaaatggagatgctgttggggatgcccat 22970431
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 58.0 bits (29), Expect = 2e-05 Identities = 32/33 (96%) Strand = Plus / Minus Query: 233 agctcaaatggagacgctgttggggatgcccat 265 |||||||||||||| |||||||||||||||||| Sbjct: 22898654 agctcaaatggagatgctgttggggatgcccat 22898622
>emb|AL935072.4|CNS08CCO Oryza sativa chromosome 12, . BAC OSJNBa0028L05 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 155568 Score = 58.0 bits (29), Expect = 2e-05 Identities = 32/33 (96%) Strand = Plus / Minus Query: 233 agctcaaatggagacgctgttggggatgcccat 265 |||||||||||||| |||||||||||||||||| Sbjct: 79740 agctcaaatggagatgctgttggggatgcccat 79708
>gb|BT009097.1| Triticum aestivum clone wkm2c.pk005.n2:fis, full insert mRNA sequence Length = 1129 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Minus Query: 235 ctcaaatggagacgctgttggggatgcccatggcggtgagcccc 278 |||| ||||||| |||||||||||||||| |||| ||||||||| Sbjct: 907 ctcagatggagatgctgttggggatgcccctggccgtgagcccc 864 Score = 54.0 bits (27), Expect = 4e-04 Identities = 63/75 (84%) Strand = Plus / Minus Query: 306 gtgttggggtacagcagcatgtagggcatcttcacgggcccgttccggttcttgagcgcc 365 ||||||||||| |||||||||||||| | ||| | |||||| | |||||||||||| | Sbjct: 839 gtgttggggtagagcagcatgtaggggaacttggccggcccggtgcggttcttgagccgc 780 Query: 366 gggtccttgttcatg 380 |||||| ||||||| Sbjct: 779 gggtccccgttcatg 765
>gb|BT008992.1| Triticum aestivum clone wdk2c.pk011.j13:fis, full insert mRNA sequence Length = 1020 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Minus Query: 234 gctcaaatggagacgctgttggggatgcccatggcggtgagccc 277 ||||| ||||||| |||||||||||||||| | ||||||||||| Sbjct: 755 gctcagatggagatgctgttggggatgcccttagcggtgagccc 712
>gb|AF465643.1| Zea mays B73 lipoxygenase gene, complete cds Length = 5013 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Minus Query: 234 gctcaaatggagacgctgttggggatgcccatggcggtgagccc 277 ||||| ||||||| |||||||||||||||| |||| |||||||| Sbjct: 4664 gctcagatggagatgctgttggggatgcccttggcagtgagccc 4621
>gb|AF149803.1|AF149803 Zea mays lipoxygenase mRNA, lipoxygenase-L2 allele, partial cds Length = 2267 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Minus Query: 234 gctcaaatggagacgctgttggggatgcccatggcggtgagccc 277 ||||| ||||||| |||||||||||||||| |||| |||||||| Sbjct: 2066 gctcagatggagatgctgttggggatgcccttggcagtgagccc 2023 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Minus Query: 306 gtgttggggtacagcagcatgtaggg 331 ||||||||||| |||||||||||||| Sbjct: 1997 gtgttggggtagagcagcatgtaggg 1972
>gb|L37358.1|BLYLOXC Hordeum vulgare lipoxygenase 2 (LoxC) mRNA, complete cds Length = 2910 Score = 54.0 bits (27), Expect = 4e-04 Identities = 45/51 (88%) Strand = Plus / Minus Query: 228 tgctcagctcaaatggagacgctgttggggatgcccatggcggtgagcccc 278 ||||||| ||| ||||| | |||||| ||||||||| |||||||||||||| Sbjct: 2666 tgctcagatcagatggatatgctgttcgggatgcccctggcggtgagcccc 2616
>gb|AF329371.1|AF329371 Zea mays lipoxygenase mRNA, complete cds Length = 2595 Score = 52.0 bits (26), Expect = 0.001 Identities = 35/38 (92%) Strand = Plus / Minus Query: 240 atggagacgctgttggggatgcccatggcggtgagccc 277 ||||||| |||||||||||||||| |||| |||||||| Sbjct: 2591 atggagatgctgttggggatgcccttggcagtgagccc 2554
>gb|AY098520.1| Ananas comosus lipoxygenase I mRNA, partial cds Length = 1143 Score = 52.0 bits (26), Expect = 0.001 Identities = 32/34 (94%) Strand = Plus / Minus Query: 325 tgtagggcatcttcacgggcccgttccggttctt 358 |||||||||||||||| || |||||||||||||| Sbjct: 930 tgtagggcatcttcaccgggccgttccggttctt 897
>gb|AY098518.1| Ananas comosus lipoxygenase III mRNA, partial cds Length = 524 Score = 52.0 bits (26), Expect = 0.001 Identities = 44/50 (88%) Strand = Plus / Minus Query: 312 gggtacagcagcatgtagggcatcttcacgggcccgttccggttcttgag 361 ||||| ||||| |||| ||||||||||| |||||||||| ||||||||| Sbjct: 451 gggtaaagcagtgtgtacggcatcttcaccggcccgttcctgttcttgag 402
>gb|DQ428248.1| Sorghum propinquum locus PRC0271 genomic sequence Length = 810 Score = 48.1 bits (24), Expect = 0.023 Identities = 48/56 (85%) Strand = Plus / Minus Query: 306 gtgttggggtacagcagcatgtagggcatcttcacgggcccgttccggttcttgag 361 ||||||||||| |||||| ||||||| | ||| | |||||||| ||||||||||| Sbjct: 729 gtgttggggtagagcagcgtgtaggggaacttggccggcccgttgcggttcttgag 674
>gb|DQ428247.1| Sorghum bicolor voucher PI585454 locus PRC0271 genomic sequence Length = 805 Score = 48.1 bits (24), Expect = 0.023 Identities = 48/56 (85%) Strand = Plus / Minus Query: 306 gtgttggggtacagcagcatgtagggcatcttcacgggcccgttccggttcttgag 361 ||||||||||| |||||| ||||||| | ||| | |||||||| ||||||||||| Sbjct: 724 gtgttggggtagagcagcgtgtaggggaacttggccggcccgttgcggttcttgag 669
>gb|DQ428246.1| Sorghum bicolor voucher PI267539 locus PRC0271 genomic sequence Length = 805 Score = 48.1 bits (24), Expect = 0.023 Identities = 48/56 (85%) Strand = Plus / Minus Query: 306 gtgttggggtacagcagcatgtagggcatcttcacgggcccgttccggttcttgag 361 ||||||||||| |||||| ||||||| | ||| | |||||||| ||||||||||| Sbjct: 724 gtgttggggtagagcagcgtgtaggggaacttggccggcccgttgcggttcttgag 669
>gb|DQ428245.1| Sorghum bicolor voucher PI267408 locus PRC0271 genomic sequence Length = 805 Score = 48.1 bits (24), Expect = 0.023 Identities = 48/56 (85%) Strand = Plus / Minus Query: 306 gtgttggggtacagcagcatgtagggcatcttcacgggcccgttccggttcttgag 361 ||||||||||| |||||| ||||||| | ||| | |||||||| ||||||||||| Sbjct: 724 gtgttggggtagagcagcgtgtaggggaacttggccggcccgttgcggttcttgag 669
>gb|DQ428244.1| Sorghum bicolor voucher PI221607 locus PRC0271 genomic sequence Length = 805 Score = 48.1 bits (24), Expect = 0.023 Identities = 48/56 (85%) Strand = Plus / Minus Query: 306 gtgttggggtacagcagcatgtagggcatcttcacgggcccgttccggttcttgag 361 ||||||||||| |||||| ||||||| | ||| | |||||||| ||||||||||| Sbjct: 724 gtgttggggtagagcagcgtgtaggggaacttggccggcccgttgcggttcttgag 669
>gb|DQ428243.1| Sorghum bicolor voucher PI152702 locus PRC0271 genomic sequence Length = 805 Score = 48.1 bits (24), Expect = 0.023 Identities = 48/56 (85%) Strand = Plus / Minus Query: 306 gtgttggggtacagcagcatgtagggcatcttcacgggcccgttccggttcttgag 361 ||||||||||| |||||| ||||||| | ||| | |||||||| ||||||||||| Sbjct: 724 gtgttggggtagagcagcgtgtaggggaacttggccggcccgttgcggttcttgag 669
>gb|DQ428242.1| Sorghum bicolor voucher NSL92371 locus PRC0271 genomic sequence Length = 805 Score = 48.1 bits (24), Expect = 0.023 Identities = 48/56 (85%) Strand = Plus / Minus Query: 306 gtgttggggtacagcagcatgtagggcatcttcacgggcccgttccggttcttgag 361 ||||||||||| |||||| ||||||| | ||| | |||||||| ||||||||||| Sbjct: 724 gtgttggggtagagcagcgtgtaggggaacttggccggcccgttgcggttcttgag 669
>gb|DQ428241.1| Sorghum bicolor voucher NSL87902 locus PRC0271 genomic sequence Length = 805 Score = 48.1 bits (24), Expect = 0.023 Identities = 48/56 (85%) Strand = Plus / Minus Query: 306 gtgttggggtacagcagcatgtagggcatcttcacgggcccgttccggttcttgag 361 ||||||||||| |||||| ||||||| | ||| | |||||||| ||||||||||| Sbjct: 724 gtgttggggtagagcagcgtgtaggggaacttggccggcccgttgcggttcttgag 669
>gb|DQ428240.1| Sorghum bicolor voucher NSL87666 locus PRC0271 genomic sequence Length = 805 Score = 48.1 bits (24), Expect = 0.023 Identities = 48/56 (85%) Strand = Plus / Minus Query: 306 gtgttggggtacagcagcatgtagggcatcttcacgggcccgttccggttcttgag 361 ||||||||||| |||||| ||||||| | ||| | |||||||| ||||||||||| Sbjct: 724 gtgttggggtagagcagcgtgtaggggaacttggccggcccgttgcggttcttgag 669
>gb|DQ428239.1| Sorghum bicolor voucher NSL77217 locus PRC0271 genomic sequence Length = 805 Score = 48.1 bits (24), Expect = 0.023 Identities = 48/56 (85%) Strand = Plus / Minus Query: 306 gtgttggggtacagcagcatgtagggcatcttcacgggcccgttccggttcttgag 361 ||||||||||| |||||| ||||||| | ||| | |||||||| ||||||||||| Sbjct: 724 gtgttggggtagagcagcgtgtaggggaacttggccggcccgttgcggttcttgag 669
>gb|DQ428238.1| Sorghum bicolor voucher NSL77034 locus PRC0271 genomic sequence Length = 805 Score = 48.1 bits (24), Expect = 0.023 Identities = 48/56 (85%) Strand = Plus / Minus Query: 306 gtgttggggtacagcagcatgtagggcatcttcacgggcccgttccggttcttgag 361 ||||||||||| |||||| ||||||| | ||| | |||||||| ||||||||||| Sbjct: 724 gtgttggggtagagcagcgtgtaggggaacttggccggcccgttgcggttcttgag 669
>gb|DQ428237.1| Sorghum bicolor voucher NSL55243 locus PRC0271 genomic sequence Length = 805 Score = 48.1 bits (24), Expect = 0.023 Identities = 48/56 (85%) Strand = Plus / Minus Query: 306 gtgttggggtacagcagcatgtagggcatcttcacgggcccgttccggttcttgag 361 ||||||||||| |||||| ||||||| | ||| | |||||||| ||||||||||| Sbjct: 724 gtgttggggtagagcagcgtgtaggggaacttggccggcccgttgcggttcttgag 669
>gb|DQ428236.1| Sorghum bicolor voucher NSL51365 locus PRC0271 genomic sequence Length = 805 Score = 48.1 bits (24), Expect = 0.023 Identities = 48/56 (85%) Strand = Plus / Minus Query: 306 gtgttggggtacagcagcatgtagggcatcttcacgggcccgttccggttcttgag 361 ||||||||||| |||||| ||||||| | ||| | |||||||| ||||||||||| Sbjct: 724 gtgttggggtagagcagcgtgtaggggaacttggccggcccgttgcggttcttgag 669
>gb|DQ428235.1| Sorghum bicolor voucher NSL51030 locus PRC0271 genomic sequence Length = 805 Score = 48.1 bits (24), Expect = 0.023 Identities = 48/56 (85%) Strand = Plus / Minus Query: 306 gtgttggggtacagcagcatgtagggcatcttcacgggcccgttccggttcttgag 361 ||||||||||| |||||| ||||||| | ||| | |||||||| ||||||||||| Sbjct: 724 gtgttggggtagagcagcgtgtaggggaacttggccggcccgttgcggttcttgag 669
>gb|DQ428234.1| Sorghum bicolor voucher BTx623 locus PRC0271 genomic sequence Length = 805 Score = 48.1 bits (24), Expect = 0.023 Identities = 48/56 (85%) Strand = Plus / Minus Query: 306 gtgttggggtacagcagcatgtagggcatcttcacgggcccgttccggttcttgag 361 ||||||||||| |||||| ||||||| | ||| | |||||||| ||||||||||| Sbjct: 724 gtgttggggtagagcagcgtgtaggggaacttggccggcccgttgcggttcttgag 669
>gb|AY720897.2| Triticum aestivum lipoxygenase gene, partial sequence Length = 934 Score = 46.1 bits (23), Expect = 0.092 Identities = 26/27 (96%) Strand = Plus / Plus Query: 248 gctgttggggatgcccatggcggtgag 274 |||||||||||||||| |||||||||| Sbjct: 3 gctgttggggatgcccttggcggtgag 29
>ref|XM_469655.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2613 Score = 46.1 bits (23), Expect = 0.092 Identities = 29/31 (93%) Strand = Plus / Minus Query: 240 atggagacgctgttggggatgcccatggcgg 270 ||||||| |||||||||||||||| |||||| Sbjct: 2609 atggagatgctgttggggatgcccctggcgg 2579
>ref|XM_469409.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2601 Score = 46.1 bits (23), Expect = 0.092 Identities = 29/31 (93%) Strand = Plus / Minus Query: 243 gagacgctgttggggatgcccatggcggtga 273 |||| |||||||||||||||| ||||||||| Sbjct: 2594 gagatgctgttggggatgcccttggcggtga 2564
>emb|X64396.1|OSLRNA O.sativa mRNA for lipoxygenase L-2 Length = 2830 Score = 46.1 bits (23), Expect = 0.092 Identities = 29/31 (93%) Strand = Plus / Minus Query: 240 atggagacgctgttggggatgcccatggcgg 270 ||||||| |||||||||||||||| |||||| Sbjct: 2691 atggagatgctgttggggatgcccctggcgg 2661
>gb|AC117988.3| Oryza sativa chromosome 3 BAC OSJNBa0057G07 genomic sequence, complete sequence Length = 155106 Score = 46.1 bits (23), Expect = 0.092 Identities = 29/31 (93%) Strand = Plus / Plus Query: 240 atggagacgctgttggggatgcccatggcgg 270 ||||||| |||||||||||||||| |||||| Sbjct: 81306 atggagatgctgttggggatgcccctggcgg 81336
>emb|AJ507213.1|HVU507213 Hordeum vulgare mRNA for lipoxygenase 2 (lox2:Hv:3 gene) Length = 2967 Score = 46.1 bits (23), Expect = 0.092 Identities = 26/27 (96%) Strand = Plus / Minus Query: 236 tcaaatggagacgctgttggggatgcc 262 ||||||||||| ||||||||||||||| Sbjct: 2774 tcaaatggagatgctgttggggatgcc 2748
>gb|AC097368.3| Oryza sativa chromosome 3 BAC OSJNBb0017F17 genomic sequence, complete sequence Length = 119329 Score = 46.1 bits (23), Expect = 0.092 Identities = 29/31 (93%) Strand = Plus / Plus Query: 243 gagacgctgttggggatgcccatggcggtga 273 |||| |||||||||||||||| ||||||||| Sbjct: 10793 gagatgctgttggggatgcccttggcggtga 10823 Score = 40.1 bits (20), Expect = 5.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 350 ccggttcttgagcgccgggtccttgttcatgt 381 ||||||||||||| |||||||||||||||| Sbjct: 51947 ccggttcttgagcagggggtccttgttcatgt 51978
>gb|AF271894.1|AF271894 Zea mays lipoxygenase (LOX) mRNA, complete cds Length = 2845 Score = 46.1 bits (23), Expect = 0.092 Identities = 35/39 (89%) Strand = Plus / Minus Query: 235 ctcaaatggagacgctgttggggatgcccatggcggtga 273 |||||||||||| |||||| || |||||| ||||||||| Sbjct: 2623 ctcaaatggagatgctgtttggaatgcccttggcggtga 2585
>dbj|AK073529.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046E17, full insert sequence Length = 2928 Score = 46.1 bits (23), Expect = 0.092 Identities = 29/31 (93%) Strand = Plus / Minus Query: 240 atggagacgctgttggggatgcccatggcgg 270 ||||||| |||||||||||||||| |||||| Sbjct: 2724 atggagatgctgttggggatgcccctggcgg 2694
>ref|XM_483279.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3198 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Minus Query: 248 gctgttggggatgcccatggcggtga 273 ||||||||||||||||||| |||||| Sbjct: 2965 gctgttggggatgcccatgccggtga 2940
>ref|XM_483276.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2775 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Minus Query: 248 gctgttggggatgcccatggcggtga 273 ||||||||||||||||||| |||||| Sbjct: 2763 gctgttggggatgcccatgccggtga 2738
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Minus Query: 248 gctgttggggatgcccatggcggtga 273 ||||||||||||||||||| |||||| Sbjct: 25242563 gctgttggggatgcccatgccggtga 25242538 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Plus Query: 248 gctgttggggatgcccatggcggtga 273 ||||||||||||||||||| |||||| Sbjct: 25209466 gctgttggggatgcccatgccggtga 25209491
>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome Length = 3147090 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 278 catcgccttctccccgttggcg 299 |||||||||||||||||||||| Sbjct: 1418662 catcgccttctccccgttggcg 1418683
>dbj|AP005816.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:B1168A08 Length = 138135 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Minus Query: 248 gctgttggggatgcccatggcggtga 273 ||||||||||||||||||| |||||| Sbjct: 107686 gctgttggggatgcccatgccggtga 107661 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Plus Query: 248 gctgttggggatgcccatggcggtga 273 ||||||||||||||||||| |||||| Sbjct: 74589 gctgttggggatgcccatgccggtga 74614
>dbj|AP006049.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0016N23 Length = 147336 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Minus Query: 248 gctgttggggatgcccatggcggtga 273 ||||||||||||||||||| |||||| Sbjct: 17748 gctgttggggatgcccatgccggtga 17723
>dbj|AK066825.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013075A10, full insert sequence Length = 3196 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Minus Query: 248 gctgttggggatgcccatggcggtga 273 ||||||||||||||||||| |||||| Sbjct: 2963 gctgttggggatgcccatgccggtga 2938
>gb|AF095896.1|AF095896 Oryza sativa lipoxygenase (CM-LOX2) mRNA, partial cds Length = 2232 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Minus Query: 248 gctgttggggatgcccatggcggtga 273 ||||||||||||||||||| |||||| Sbjct: 2040 gctgttggggatgcccatgccggtga 2015
>gb|AF095895.1|AF095895 Oryza sativa lipoxygenase (CM-LOX1) mRNA, partial cds Length = 2664 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Minus Query: 248 gctgttggggatgcccatggcggtga 273 ||||||||||||||||||| |||||| Sbjct: 2448 gctgttggggatgcccatgccggtga 2423
>dbj|D14000.1|RICL2OP Oryza sativa (japonica cultivar-group) lox2osPil mRNA for lipoxygenase, complete cds Length = 3007 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Minus Query: 248 gctgttggggatgcccatggcggtga 273 ||||||||||||||||||| |||||| Sbjct: 2878 gctgttggggatgcccatgccggtga 2853
>gb|U32428.1|TAU32428 Triticum aestivum lipoxygenase mRNA, partial cds Length = 1814 Score = 44.1 bits (22), Expect = 0.37 Identities = 97/122 (79%) Strand = Plus / Minus Query: 240 atggagacgctgttggggatgcccatggcggtgagccccatcgccttctccccgttggcg 299 ||||||| |||||||||||||||| |||| |||| ||| | || |||| || | | | Sbjct: 1552 atggagatgctgttggggatgcccttggctgtgatcccggtggcgctctcaccatcgatg 1493 Query: 300 tccgacgtgttggggtacagcagcatgtagggcatcttcacgggcccgttccggttcttg 359 || || ||||||||||| || ||||||||||| | || | ||||| |||||||||||| Sbjct: 1492 tcagatgtgttggggtagagtagcatgtaggggaattttgctggcccattccggttcttg 1433 Query: 360 ag 361 || Sbjct: 1432 ag 1431
>gb|AC152958.1| Mus musculus 6 BAC RP23-301K21 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 182995 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 126 ccacccagaagccaatgaaaa 146 ||||||||||||||||||||| Sbjct: 111481 ccacccagaagccaatgaaaa 111461
>gb|AC107868.9| Mus musculus chromosome 17, clone RP23-405A17, complete sequence Length = 193624 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 124 aaccacccagaagccaatgaaaagt 148 |||||||||| |||||||||||||| Sbjct: 6038 aaccacccagcagccaatgaaaagt 6014
>ref|XM_591335.2| PREDICTED: Bos taurus similar to signal-induced proliferation-associated 1 like 3 (LOC513625), mRNA Length = 5895 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 398 gatctccaccagccggctgcc 418 ||||||||||||||||||||| Sbjct: 2820 gatctccaccagccggctgcc 2800
>ref|XM_879429.1| PREDICTED: Bos taurus similar to signal-induced proliferation-associated 1 like 1, transcript variant 8 (LOC534839), mRNA Length = 7417 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 398 gatctccaccagccggctgcc 418 ||||||||||||||||||||| Sbjct: 3101 gatctccaccagccggctgcc 3081
>ref|XM_879405.1| PREDICTED: Bos taurus similar to signal-induced proliferation-associated 1 like 1, transcript variant 7 (LOC534839), mRNA Length = 7543 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 398 gatctccaccagccggctgcc 418 ||||||||||||||||||||| Sbjct: 3227 gatctccaccagccggctgcc 3207
>ref|XM_879377.1| PREDICTED: Bos taurus similar to signal-induced proliferation-associated 1 like 1, transcript variant 6 (LOC534839), mRNA Length = 7390 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 398 gatctccaccagccggctgcc 418 ||||||||||||||||||||| Sbjct: 3101 gatctccaccagccggctgcc 3081
>ref|XM_879350.1| PREDICTED: Bos taurus similar to signal-induced proliferation-associated 1 like 1, transcript variant 5 (LOC534839), mRNA Length = 7507 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 398 gatctccaccagccggctgcc 418 ||||||||||||||||||||| Sbjct: 3128 gatctccaccagccggctgcc 3108
>ref|XM_879253.1| PREDICTED: Bos taurus similar to signal-induced proliferation-associated 1 like 1, transcript variant 2 (LOC534839), mRNA Length = 4851 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 398 gatctccaccagccggctgcc 418 ||||||||||||||||||||| Sbjct: 3101 gatctccaccagccggctgcc 3081
>ref|XM_614747.2| PREDICTED: Bos taurus similar to signal-induced proliferation-associated 1 like 1, transcript variant 1 (LOC534839), mRNA Length = 7480 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 398 gatctccaccagccggctgcc 418 ||||||||||||||||||||| Sbjct: 3101 gatctccaccagccggctgcc 3081
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 364 ccgggtccttgttcatgtcga 384 ||||||||||||||||||||| Sbjct: 2460096 ccgggtccttgttcatgtcga 2460116
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 364 ccgggtccttgttcatgtcga 384 ||||||||||||||||||||| Sbjct: 3093383 ccgggtccttgttcatgtcga 3093403
>gb|AC124174.4| Mus musculus BAC clone RP23-181O22 from chromosome 3, complete sequence Length = 197553 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 126 ccacccagaagccaatgaaaa 146 ||||||||||||||||||||| Sbjct: 163213 ccacccagaagccaatgaaaa 163193
>gb|AF514331.1| Scyllarus arctus 28S ribosomal RNA gene, partial sequence Length = 475 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 96 ccactaatccctggcaactaattac 120 ||||||||||||||||||| ||||| Sbjct: 431 ccactaatccctggcaactgattac 455
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 364 ccgggtccttgttcatgtcga 384 ||||||||||||||||||||| Sbjct: 640077 ccgggtccttgttcatgtcga 640097
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 364 ccgggtccttgttcatgtcga 384 ||||||||||||||||||||| Sbjct: 2823461 ccgggtccttgttcatgtcga 2823481
>gb|AC082644.10| Oryza sativa chromosome 3 BAC OSJNBa0013M12 genomic sequence, complete sequence Length = 158714 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 235 ctcaaatggagacgctgttggggatgccc 263 ||||||||| || |||||||||||||||| Sbjct: 49246 ctcaaatggtgatgctgttggggatgccc 49274
>gb|AC144427.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNAb0012F18, complete sequence Length = 122159 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 235 ctcaaatggagacgctgttggggatgccc 263 ||||||||| || |||||||||||||||| Sbjct: 111405 ctcaaatggtgatgctgttggggatgccc 111433
>gb|AC154544.2| Mus musculus BAC clone RP23-228G19 from chromosome 17, complete sequence Length = 183626 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 124 aaccacccagaagccaatgaaaagt 148 |||||||||| |||||||||||||| Sbjct: 147032 aaccacccagcagccaatgaaaagt 147008
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 364 ccgggtccttgttcatgtcga 384 ||||||||||||||||||||| Sbjct: 2368842 ccgggtccttgttcatgtcga 2368822
>emb|AL445074.4|CNS07ECX Human chromosome 14 DNA sequence BAC R-313C4 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 144538 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 87 ttccatcatccactaatccctggcaacta 115 ||||||| |||||||||||||||||||| Sbjct: 2646 ttccatctcccactaatccctggcaacta 2674
>gb|AC138358.12| Mus musculus chromosome 1, clone RP24-147G10, complete sequence Length = 180227 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 392 cttctcgatctccaccagcc 411 |||||||||||||||||||| Sbjct: 65514 cttctcgatctccaccagcc 65495
>gb|AC159317.3| Mus musculus BAC clone RP23-76I20 from chromosome 16, complete sequence Length = 224160 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 228 tgctcagctcaaatggagac 247 |||||||||||||||||||| Sbjct: 181210 tgctcagctcaaatggagac 181229
>ref|XM_469401.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2726 Score = 40.1 bits (20), Expect = 5.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 350 ccggttcttgagcgccgggtccttgttcatgt 381 ||||||||||||| |||||||||||||||| Sbjct: 2481 ccggttcttgagcagggggtccttgttcatgt 2450
>gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, complete genome Length = 943016 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 180 tccatgaccagcggacggac 199 |||||||||||||||||||| Sbjct: 181139 tccatgaccagcggacggac 181120
>gb|BC059034.1| Mus musculus dual specificity phosphatase 27 (putative), mRNA (cDNA clone IMAGE:6811947), partial cds Length = 3391 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 392 cttctcgatctccaccagcc 411 |||||||||||||||||||| Sbjct: 929 cttctcgatctccaccagcc 910
>gb|AY581127.1| Azorhizobium caulinodans strain ORS571 hydrogenase gene cluster, complete sequence Length = 21000 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 395 ctcgatctccaccagccggc 414 |||||||||||||||||||| Sbjct: 15277 ctcgatctccaccagccggc 15258
>ref|XM_657908.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN5396.2), mRNA Length = 555 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 296 ggcgtccgacgtgttggggt 315 |||||||||||||||||||| Sbjct: 102 ggcgtccgacgtgttggggt 83
>ref|XM_979911.1| PREDICTED: Mus musculus dual specificity phosphatase 27 (putative) (Dusp27), mRNA Length = 3357 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 392 cttctcgatctccaccagcc 411 |||||||||||||||||||| Sbjct: 912 cttctcgatctccaccagcc 893
>gb|U00096.2| Escherichia coli K-12 MG1655, complete genome Length = 4639675 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 57 atcaacatcatctacgacac 76 |||||||||||||||||||| Sbjct: 1401984 atcaacatcatctacgacac 1402003
>emb|AL160154.11| Human DNA sequence from clone RP11-447N10 on chromosome 13 Contains a CpG island, complete sequence Length = 157379 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 atccctggcaactaattacc 121 |||||||||||||||||||| Sbjct: 53547 atccctggcaactaattacc 53528
>dbj|AP009048.1| Escherichia coli W3110 DNA, complete genome Length = 4646332 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 57 atcaacatcatctacgacac 76 |||||||||||||||||||| Sbjct: 1405674 atcaacatcatctacgacac 1405693
>dbj|AK142263.1| Mus musculus 13 days embryo heart cDNA, RIKEN full-length enriched library, clone:D330024O22 product:hypothetical Dual specificity protein phosphatase containing protein, full insert sequence Length = 4022 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 392 cttctcgatctccaccagcc 411 |||||||||||||||||||| Sbjct: 1581 cttctcgatctccaccagcc 1562
>gb|AC154359.2| Mus musculus BAC clone RP23-178L8 from chromosome 16, complete sequence Length = 212696 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 228 tgctcagctcaaatggagac 247 |||||||||||||||||||| Sbjct: 11944 tgctcagctcaaatggagac 11963
>dbj|AK048603.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched library, clone:C130085G02 product:hypothetical Serine-rich region/Tyrosine specific protein phosphatase and dual specificity protein phosphatase family/Dual specificity protein phosphatase/Glutamic acid-rich region containing protein, full insert sequence Length = 3473 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 392 cttctcgatctccaccagcc 411 |||||||||||||||||||| Sbjct: 1603 cttctcgatctccaccagcc 1584
>ref|XM_573493.1| PREDICTED: Rattus norvegicus similar to C130085G02Rik protein (LOC498267), mRNA Length = 3159 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 392 cttctcgatctccaccagcc 411 |||||||||||||||||||| Sbjct: 1182 cttctcgatctccaccagcc 1163
>dbj|AB099850.1| Oryza sativa (japonica cultivar-group) r9-LOX1 mRNA for 9-lipoxigenase, complete cds Length = 2988 Score = 40.1 bits (20), Expect = 5.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 350 ccggttcttgagcgccgggtccttgttcatgt 381 ||||||||||||| |||||||||||||||| Sbjct: 2547 ccggttcttgagcagggggtccttgttcatgt 2516
>dbj|AK103565.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033132L12, full insert sequence Length = 2830 Score = 40.1 bits (20), Expect = 5.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 350 ccggttcttgagcgccgggtccttgttcatgt 381 ||||||||||||| |||||||||||||||| Sbjct: 2555 ccggttcttgagcagggggtccttgttcatgt 2524
>ref|NM_001033344.1| Mus musculus dual specificity phosphatase 27 (putative) (Dusp27), mRNA Length = 4022 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 392 cttctcgatctccaccagcc 411 |||||||||||||||||||| Sbjct: 1581 cttctcgatctccaccagcc 1562
>gb|AE005174.2| Escherichia coli O157:H7 EDL933, complete genome Length = 5528445 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 57 atcaacatcatctacgacac 76 |||||||||||||||||||| Sbjct: 2173734 atcaacatcatctacgacac 2173715
>dbj|BA000007.2| Escherichia coli O157:H7 DNA, complete genome Length = 5498450 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 57 atcaacatcatctacgacac 76 |||||||||||||||||||| Sbjct: 1913432 atcaacatcatctacgacac 1913451
>dbj|AP004943.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT38E13, TM0115, complete sequence Length = 95582 Score = 40.1 bits (20), Expect = 5.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 325 tgtagggcatcttcacgggcccgttccggttc 356 |||||||||||||||| ||||| | ||||||| Sbjct: 73247 tgtagggcatcttcaccggcccataccggttc 73216
>gb|CP000036.1| Shigella boydii Sb227, complete genome Length = 4519823 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 57 atcaacatcatctacgacac 76 |||||||||||||||||||| Sbjct: 1705633 atcaacatcatctacgacac 1705614
>gb|CP000038.1| Shigella sonnei Ss046, complete genome Length = 4825265 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 57 atcaacatcatctacgacac 76 |||||||||||||||||||| Sbjct: 1891170 atcaacatcatctacgacac 1891151 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,248,848 Number of Sequences: 3902068 Number of extensions: 3248848 Number of successful extensions: 68364 Number of sequences better than 10.0: 105 Number of HSP's better than 10.0 without gapping: 109 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 67695 Number of HSP's gapped (non-prelim): 658 length of query: 425 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 403 effective length of database: 17,147,199,772 effective search space: 6910321508116 effective search space used: 6910321508116 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)