>CYB_CAEEL (P24890) Cytochrome b|
          Length = 370

 Score = 33.5 bits (75), Expect = 0.15
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = -3

Query: 129 FQLFHFGMVGHLFLFSSKPWLLLFCFQPLYFPSSRRWKIWLSG 1
           F++FHF      F+F     L L  F+ L+F S R  K+W+SG
Sbjct: 76  FRIFHFNGASLFFIF-----LYLHIFKGLFFMSYRLKKVWMSG 113

>CYB_CAEBR (Q8HEC2) Cytochrome b|
          Length = 370

 Score = 32.7 bits (73), Expect = 0.25
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = -3

Query: 129 FQLFHFGMVGHLFLFSSKPWLLLFCFQPLYFPSSRRWKIWLSG 1
           F++FHF      F+F     L L  F  L+F S R  K+W+SG
Sbjct: 76  FRIFHFNGASLFFIF-----LYLHIFTGLFFMSYRLKKVWMSG 113

>CCD37_MOUSE (Q80VN0) Coiled-coil domain-containing protein 37|
          Length = 459

 Score = 30.8 bits (68), Expect = 0.94
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 8/56 (14%)
 Frame = +3

Query: 3   LTAKSSTVYLTGSKGAGNRKEEAMVWKR--------KETNVLPYQNGRAEMLPKIG 146
           LT  +ST  L G KG+G++ + A +WK         K   ++   +   + LP++G
Sbjct: 140 LTRNNSTAILFGDKGSGSKSKTAFLWKEVPGLKKVTKTGRLVKALSSSIQSLPQVG 195

>CYB_ASCSU (P24878) Cytochrome b|
          Length = 365

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -3

Query: 129 FQLFHFGMVGHLFLFSSKPWLLLFCFQPLYFPSSRRWKIWLSG 1
           F++ HF      F+F     L L  F+ L+F S R  K+W+SG
Sbjct: 71  FRVLHFNGASLFFIF-----LYLHLFKGLFFMSYRLKKVWVSG 108

>FBX44_MOUSE (Q8BK26) F-box only protein 44 (F-box only protein 6a)|
          Length = 255

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 10/43 (23%), Positives = 22/43 (51%)
 Frame = -1

Query: 233 NVKGSSQDCTVDVFAHRKVAKLIIRANPVTDLWQHFSSSILVW 105
           N+    ++  +++F H    +L++R  PV  LW+     + +W
Sbjct: 5   NINELPENILLELFIHIPARQLLLRCRPVCSLWRDLIDLVTLW 47

>CRYD_BRARE (Q4KML2) Cryptochrome DASH (Protein CRY-DASH) (zCRY-DASH)|
          Length = 520

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -3

Query: 141 SLATFQLFHFGMVGHLFLFSSKPWLLLFCFQPLY 40
           ++AT++    GM+G  F     PWL L C  P Y
Sbjct: 235 AVATYKETRNGMIGVDFSTKFSPWLALGCISPRY 268

>ATP6_RABIT (O79432) ATP synthase a chain (EC 3.6.3.14) (ATPase protein 6)|
          Length = 226

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
 Frame = -2

Query: 124 ALPFWYGRTFVSFLFQTMASSFLF-----PAPLLPVK*TVEDLAV 5
           A+P W G     F ++T AS   F     P PL+P+   +E +++
Sbjct: 105 AIPLWAGAVITGFRYKTKASLAHFLPQGTPIPLIPMLIVIETISL 149

>ATP6_CANFA (Q9ZZ62) ATP synthase a chain (EC 3.6.3.14) (ATPase protein 6)|
          Length = 226

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
 Frame = -2

Query: 124 ALPFWYGRTFVSFLFQTMASSFLF-----PAPLLPVK*TVEDLAV 5
           A+P W G     F ++T AS   F     P PL+P+   +E +++
Sbjct: 105 AIPLWAGTVITGFRYKTKASLAHFLPQGTPLPLIPMLVVIETISL 149

>S14L3_HUMAN (Q9UDX4) SEC14-like protein 3 (Tocopherol-associated protein 2)|
          Length = 400

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 93  TNVLPYQNGRAEMLPKIGNRVCSD 164
           T+VLP Q   A M+P+ GN  CS+
Sbjct: 334 TDVLPSQRYNAHMVPEDGNLTCSE 357

>YE15_CAEEL (Q18473) Hypothetical protein C35A5.5|
          Length = 520

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 3/25 (12%)
 Frame = -3

Query: 69  LLLFCFQ---PLYFPSSRRWKIWLS 4
           L+L CF    P+YFP++ +  +WLS
Sbjct: 31  LILICFYFIIPIYFPNNDKMNLWLS 55

>CRYD_OSTTA (Q5IFN2) Cryptochrome DASH, chloroplast/mitochondrial precursor|
          Length = 546

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
 Frame = -3

Query: 228 KRLLPGLYSRCVRA*KGSKANNPSKPCYR-----SLATFQLFHFGMVGHLFLFSSKPWLL 64
           KR+   L  R V   KG ++N  ++  Y       LAT+     GM+G  +     PWL 
Sbjct: 229 KRIKDCLDERSVLDFKGGESNALARVKYYLWESDRLATYFETRNGMLGGDYSTKLAPWLA 288

Query: 63  LFCFQPLYFPSSRR 22
           L C  P +  S  R
Sbjct: 289 LGCVSPRHVVSEIR 302


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,182,618
Number of Sequences: 219361
Number of extensions: 824168
Number of successful extensions: 2124
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2124
length of database: 80,573,946
effective HSP length: 65
effective length of database: 66,315,481
effective search space used: 1591571544
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)