ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl53d01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DRL27_ARATH (Q9T048) Putative disease resistance protein At4g27190 31 0.91
2PTF3A_MYCPN (P75039) PTS system fructose-specific EIIABC compone... 30 2.0
3COQ3_YEAST (P27680) Hexaprenyldihydroxybenzoate methyltransferas... 30 2.0
4SYH_CHLMU (Q9PJJ9) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histi... 29 2.6
5SYH_CHLTR (O84547) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histi... 29 3.5

>DRL27_ARATH (Q9T048) Putative disease resistance protein At4g27190|
          Length = 985

 Score = 30.8 bits (68), Expect = 0.91
 Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 11/75 (14%)
 Frame = -3

Query: 241  EVSIVDPYRYINCDALLPTSLHIILLRVLFLRNIPNTRELLVCG-----------IHCIQ 95
            E+S  D  + ++ +ALL     +  LRVL LRN+PN   +   G           IHC Q
Sbjct: 868  EISYCDSLQNLH-EALLYHQPFVPNLRVLKLRNLPNLVSICNWGEVWECLEQVEVIHCNQ 926

Query: 94   ARTLCISTDINSIKK 50
               L IS+    IKK
Sbjct: 927  LNCLPISSTCGRIKK 941



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>PTF3A_MYCPN (P75039) PTS system fructose-specific EIIABC component (EIIABC-Fru)|
           [Includes: Fructose-specific phosphotransferase enzyme
           IIA component (EC 2.7.1.-) (PTS system fructose-specific
           EIIA component) (EII-Fru); Fructose-specific
           phosphotransferas
          Length = 694

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
 Frame = +3

Query: 108 IPHTSNSLVLGMFLKNKTRNNIIWREVGNKASQLMYLYGSTIETSPIYQE--RPIVKRKC 281
           +PH  ++ VL  F+     NN+ W+ + N+  +L++L G   +   ++ E      K   
Sbjct: 66  LPHMQSATVLKPFVAVFKVNNVDWQSLDNQPVKLIFLIGVPKDQGNLHLEFISQFSKLML 125

Query: 282 QDRFS 296
           QD F+
Sbjct: 126 QDEFA 130



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>COQ3_YEAST (P27680) Hexaprenyldihydroxybenzoate methyltransferase,|
           mitochondrial precursor (EC 2.1.1.114)
           (Dihydroxyhexaprenylbenzoate methyltransferase)
           (3,4-dihydroxy-5-hexaprenylbenzoate methyltransferase)
           (DHHB methyltransferase) (DHHB-MT) (DHHB-MTas
          Length = 312

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = -3

Query: 172 ILLRVLFLRNIPNTRELLVCGIHCIQARTLCISTDINSIK-KHYNIL 35
           +LLR  FL+ I   ++L  C    IQ +T C STD +  + KH+  L
Sbjct: 1   MLLRSRFLKVIHVRKQLSACSRFAIQTQTRCKSTDASEDEVKHFQEL 47



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>SYH_CHLMU (Q9PJJ9) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA|
           ligase) (HisRS)
          Length = 428

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = +3

Query: 111 PHTSNSLVLGMFLKNKTRNNIIWREVGNKASQLMYLYGSTIETSPIYQE 257
           P+ +NS       KN  RN+ +W+ V + A ++  LYG     +P++++
Sbjct: 14  PYVTNS-------KNLWRNSFLWKTVEHAAHRICNLYGFDEIRTPVFEK 55



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>SYH_CHLTR (O84547) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA|
           ligase) (HisRS)
          Length = 428

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 8/54 (14%)
 Frame = +3

Query: 120 SNSLVLGMF--------LKNKTRNNIIWREVGNKASQLMYLYGSTIETSPIYQE 257
           SN+L  G+F         KN  RN+ +W+ V + A ++  LYG     +P++++
Sbjct: 2   SNALPKGVFDIFPYVTSPKNLWRNSSLWKRVEHAAHRICNLYGFDEIRTPVFEK 55


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,783,344
Number of Sequences: 219361
Number of extensions: 807818
Number of successful extensions: 1859
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1858
length of database: 80,573,946
effective HSP length: 76
effective length of database: 63,902,510
effective search space used: 1533660240
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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