Clone Name | rbastl53d01 |
---|---|
Clone Library Name | barley_pub |
>gb|AC114987.10| Mus musculus chromosome 3, clone RP23-81D7, complete sequence Length = 179717 Score = 44.1 bits (22), Expect = 0.25 Identities = 22/22 (100%) Strand = Plus / Plus Query: 35 taatatattgtaatgctttttt 56 |||||||||||||||||||||| Sbjct: 68406 taatatattgtaatgctttttt 68427
>gb|DQ437743.1| Pseudomonas aeruginosa strain 19660 ExoU Island B, complete sequence Length = 30407 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 150 aagaacaaaacacgcaacaat 170 ||||||||||||||||||||| Sbjct: 26187 aagaacaaaacacgcaacaat 26207
>gb|AF212132.1| Bombyx mandarina mariner transposon Bmamar2 transposase pseudogene, partial sequence Length = 458 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 186 gtcggtaataaagcatcacaattga 210 ||||||||||||| ||||||||||| Sbjct: 54 gtcggtaataaagaatcacaattga 30
>emb|AL929469.10| Zebrafish DNA sequence from clone CH211-149K17 in linkage group 12, complete sequence Length = 146415 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 25 agcatactattaatatattgt 45 ||||||||||||||||||||| Sbjct: 80947 agcatactattaatatattgt 80967
>gb|AC129596.3| Mus musculus BAC clone RP23-261I2 from 1, complete sequence Length = 162998 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 23 tgagcatactattaatatatt 43 ||||||||||||||||||||| Sbjct: 23581 tgagcatactattaatatatt 23601
>gb|AC167974.3| Mus musculus BAC clone RP23-314B11 from chromosome 1, complete sequence Length = 210757 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 23 tgagcatactattaatatatt 43 ||||||||||||||||||||| Sbjct: 164804 tgagcatactattaatatatt 164824
>emb|BX901973.12| Zebrafish DNA sequence from clone DKEY-26L17 in linkage group 3, complete sequence Length = 226081 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 51 ttttttattgagtttatatc 70 |||||||||||||||||||| Sbjct: 155584 ttttttattgagtttatatc 155603
>ref|NG_000018.1| Homo sapiens type I (acidic) hair keratin gene cluster (KRTHA.1@) on chromosome 17 Length = 100000 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 29 tactattaatatattgtaat 48 |||||||||||||||||||| Sbjct: 96099 tactattaatatattgtaat 96080
>gb|AC090259.5| Homo sapiens chromosome 15, clone RP11-424E9, complete sequence Length = 143479 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 aaagcatcacaattgatgta 214 |||||||||||||||||||| Sbjct: 126939 aaagcatcacaattgatgta 126958
>gb|AC100825.2| Homo sapiens chromosome 15, clone RP11-1152M12, complete sequence Length = 127680 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 195 aaagcatcacaattgatgta 214 |||||||||||||||||||| Sbjct: 45044 aaagcatcacaattgatgta 45025
>gb|AC007318.4| Homo sapiens BAC clone RP11-420C9 from 2, complete sequence Length = 204230 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 48 tgcttttttattgagtttat 67 |||||||||||||||||||| Sbjct: 64234 tgcttttttattgagtttat 64215
>gb|AC016370.17|AC016370 Homo sapiens chromosome 15 clone RP11-424E9, complete sequence Length = 162773 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 aaagcatcacaattgatgta 214 |||||||||||||||||||| Sbjct: 146233 aaagcatcacaattgatgta 146252
>gb|AC003958.2| Homo sapiens chromosome 17, clone RP5-18F17, complete sequence Length = 127833 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 29 tactattaatatattgtaat 48 |||||||||||||||||||| Sbjct: 96098 tactattaatatattgtaat 96079
>gb|AC119189.8| Mus musculus chromosome 1, clone RP24-178E16, complete sequence Length = 182530 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 258 agacctatcgtgaaaaggaa 277 |||||||||||||||||||| Sbjct: 123743 agacctatcgtgaaaaggaa 123724
>gb|AC160563.2| Ornithorhynchus anatinus BAC clone OABb-456P24 from chromosome unknown, complete sequence Length = 152763 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 86 tgtgcgtgcttgaatacaat 105 |||||||||||||||||||| Sbjct: 71122 tgtgcgtgcttgaatacaat 71141
>gb|AC163695.2| Ornithorhynchus anatinus BAC clone OABb-35L5 from chromosome unknown, complete sequence Length = 89299 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 agcaattccctagtattagg 139 |||||||||||||||||||| Sbjct: 10707 agcaattccctagtattagg 10726
>dbj|AP001577.3| Homo sapiens genomic DNA, chromosome 6q25.2, clone:KB611H5 Length = 144828 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 239 ttcacccatttatcaagaaa 258 |||||||||||||||||||| Sbjct: 43968 ttcacccatttatcaagaaa 43949 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,117,927 Number of Sequences: 3902068 Number of extensions: 3117927 Number of successful extensions: 59682 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 17 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 59657 Number of HSP's gapped (non-prelim): 25 length of query: 303 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 281 effective length of database: 17,147,199,772 effective search space: 4818363135932 effective search space used: 4818363135932 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)