>PYRB_BACTN (Q8A9S3) Aspartate carbamoyltransferase (EC 2.1.3.2) (Aspartate|
           transcarbamylase) (ATCase)
          Length = 313

 Score = 31.6 bits (70), Expect = 0.50
 Identities = 19/69 (27%), Positives = 36/69 (52%)
 Frame = -1

Query: 260 CKNDFPKFRKHTEQKGTTEDNIEKESLKHMILIRRGKLNLQVEYVSIRK*LLLPNVILQM 81
           CK    K+ +HTE    TE+ I    + +M  ++R +    +EY  ++   +L N +L+ 
Sbjct: 196 CKEHQIKYIEHTE---FTEEIIADADILYMTRVQRERFTDLMEYERVKNVYILRNKMLEN 252

Query: 80  TKLTVNILY 54
           T+  + IL+
Sbjct: 253 TRPNLRILH 261

>PUB2_SCHPO (Q9UTG2) E3 ubiquitin--protein ligase pub2 (EC 6.3.2.-)|
          Length = 671

 Score = 30.8 bits (68), Expect = 0.86
 Identities = 12/42 (28%), Positives = 26/42 (61%)
 Frame = -1

Query: 293 YAKVEGLVPERCKNDFPKFRKHTEQKGTTEDNIEKESLKHMI 168
           + K+E L P++ K  F +F  + + K + + N+E + +KH++
Sbjct: 183 HEKLENLTPKQLKEVFSQFLFNNQSKSSLKINLEYKVIKHLL 224

>GIL1_ENTHI (P32022) Galactose-inhibitable lectin 170 kDa subunit|
          Length = 1276

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
 Frame = -1

Query: 353 DPSPSFTSYCWSFCCYSRDQYAKVEGLVPERC---KNDFPKFRKHTEQKGTTEDNI 195
           D  PS   YCWS+ C     + K +    E C    N+  ++   +EQ+ +  D +
Sbjct: 485 DQKPSSDGYCWSYTCDQTTGFCKKDKRGKEMCTGKTNNCQEYVCDSEQRCSVRDKV 540

>YCF2_MARPO (P09975) Protein ycf2|
          Length = 2136

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 13/42 (30%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
 Frame = +1

Query: 124  LTYSTCKFNFPRLIRIICFRLSFSILSSV-VPFCSVCFLNLG 246
            LTY+  K NF R+ +I+ +++  +I+ ++ +   S+  LN+G
Sbjct: 1623 LTYTNNKLNFDRIFKIVIYKVGKTIIQNILIKSSSMNLLNIG 1664

>ULA1_SCHPO (Q9UT93) NEDD8-activating enzyme E1 regulatory subunit|
           (Ubiquitin-like activation protein 1)
           (Ubiquitin-activating enzyme E1-like 1)
          Length = 500

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
 Frame = -1

Query: 305 SRDQYAKVEGLVPERCKNDFPKFRKHTEQK----GTTEDNIEKESLKHMILIRRGKLNLQ 138
           S  QY K++ +  E+ +ND  KF+K+ +Q       + + I    +KH     R  LN++
Sbjct: 322 STQQYVKLQVIYKEKSENDILKFKKYVQQTLKRLNRSVEEITDLEIKH---FSRNCLNIK 378

Query: 137 V 135
           V
Sbjct: 379 V 379

>YIF1A_BRARE (Q6PC24) Protein YIF1A (YIP1-interacting factor homolog A)|
          Length = 307

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +1

Query: 79  VICKITLGSNSYFLILTYSTCKFNFPRLIRIICFRLSFSILSSV 210
           V C +  GS+ Y++ L +S+C   F      I   L   ILSS+
Sbjct: 229 VFCGLLFGSDGYYVALAWSSCALMF-----FIVRSLKMKILSSI 267

>HYPF_SYNY3 (Q55638) Carbamoyltransferase hypF (EC 2.1.3.-) (Carbamoyl|
           phosphate-converting enzyme hypF) ([NiFe]-hydrogenase
           maturation factor hypF) (Hydrogenase maturation protein
           hypF)
          Length = 767

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -1

Query: 353 DPSPSFTSYCWSFCCYSRDQYAKVEGLVPERCKNDFPKFRKHTE 222
           DPS     Y +  C +   +Y  +E L  +RC+    +FR+ T+
Sbjct: 116 DPSDRRYLYPFINCTHCGPRYTIIEALPYDRCRTTMARFRQCTD 159

>CYAA_SACKL (P23466) Adenylate cyclase (EC 4.6.1.1) (ATP pyrophosphate-lyase)|
           (Adenylyl cyclase)
          Length = 1839

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -1

Query: 302 RDQYAKVEGLVPERCKNDFPKFRKHTEQKGTTEDNIEKE 186
           R+++ ++E    E   N  PKF+KH     TT  N E +
Sbjct: 14  REKHPQIEETFEEHVHNAMPKFKKHYALGITTHTNDEDD 52

>PPCK_RHOPA (Q9ZNH4) Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) (PEP|
           carboxykinase) (Phosphoenolpyruvate carboxylase) (PEPCK)
          Length = 537

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -1

Query: 302 RDQYAKVEGLVPERCKNDFPKFRKHTEQKGTTEDNI 195
           R + A++E  VPE    D P FR   ++ G   +N+
Sbjct: 143 RPERAELENFVPELTLIDLPSFRADPKRHGCRSENV 178

>NRAM4_ARATH (Q9FN18) Metal transporter Nramp4 (AtNramp4)|
          Length = 512

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 9/46 (19%), Positives = 25/46 (54%)
 Frame = +1

Query: 61  ILTVSFVICKITLGSNSYFLILTYSTCKFNFPRLIRIICFRLSFSI 198
           + T+S+++  + +  N Y ++  +S    N   L+ +I F +++ +
Sbjct: 437 VQTISWIVAALVIAINGYLMVDFFSGAATNLILLVPVIIFAIAYVV 482


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,882,084
Number of Sequences: 219361
Number of extensions: 833107
Number of successful extensions: 1956
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1956
length of database: 80,573,946
effective HSP length: 93
effective length of database: 60,173,373
effective search space used: 1444160952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)