Clone Name | rbastl53c09 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_473987.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 3582 Score = 48.1 bits (24), Expect = 0.021 Identities = 57/68 (83%) Strand = Plus / Minus Query: 149 atcagagttctcattctcgtcaccagggactgcatgctctccagcttgtcggtcagctgc 208 |||| |||||||| | | ||||||| ||| ||||||||||| |||||||| ||| ||| Sbjct: 3578 atcaaagttctcaattttgtcaccaaggattgcatgctctctagcttgtcattcaattgc 3519 Query: 209 ctgatgtc 216 |||||||| Sbjct: 3518 ctgatgtc 3511
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 48.1 bits (24), Expect = 0.021 Identities = 57/68 (83%) Strand = Plus / Plus Query: 149 atcagagttctcattctcgtcaccagggactgcatgctctccagcttgtcggtcagctgc 208 |||| |||||||| | | ||||||| ||| ||||||||||| |||||||| ||| ||| Sbjct: 32016557 atcaaagttctcaattttgtcaccaaggattgcatgctctctagcttgtcattcaattgc 32016616 Query: 209 ctgatgtc 216 |||||||| Sbjct: 32016617 ctgatgtc 32016624
>dbj|AK121640.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033055A13, full insert sequence Length = 4117 Score = 48.1 bits (24), Expect = 0.021 Identities = 57/68 (83%) Strand = Plus / Minus Query: 149 atcagagttctcattctcgtcaccagggactgcatgctctccagcttgtcggtcagctgc 208 |||| |||||||| | | ||||||| ||| ||||||||||| |||||||| ||| ||| Sbjct: 3828 atcaaagttctcaattttgtcaccaaggattgcatgctctctagcttgtcattcaattgc 3769 Query: 209 ctgatgtc 216 |||||||| Sbjct: 3768 ctgatgtc 3761
>emb|AL662988.4|OSJN00186 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0089N06, complete sequence Length = 141752 Score = 48.1 bits (24), Expect = 0.021 Identities = 57/68 (83%) Strand = Plus / Plus Query: 149 atcagagttctcattctcgtcaccagggactgcatgctctccagcttgtcggtcagctgc 208 |||| |||||||| | | ||||||| ||| ||||||||||| |||||||| ||| ||| Sbjct: 37264 atcaaagttctcaattttgtcaccaaggattgcatgctctctagcttgtcattcaattgc 37323 Query: 209 ctgatgtc 216 |||||||| Sbjct: 37324 ctgatgtc 37331
>emb|AL807374.1|NCB13H18 Neurospora crassa DNA linkage group V BAC contig B13H18 Length = 122576 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 73 cactccccagttttgttttgt 93 ||||||||||||||||||||| Sbjct: 95326 cactccccagttttgttttgt 95306
>ref|XM_623682.1| PREDICTED: Apis mellifera similar to GA11263-PA (LOC408421), mRNA Length = 2275 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 23 tgtacacaaacgaaagaataatttc 47 |||||||||| |||||||||||||| Sbjct: 81 tgtacacaaaagaaagaataatttc 57
>gb|AC184054.2| Pan troglodytes BAC clone CH251-706J5 from chromosome 15, complete sequence Length = 177821 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 115 tccaaagaaatagagcaaca 134 |||||||||||||||||||| Sbjct: 160409 tccaaagaaatagagcaaca 160428
>emb|AL354653.26| Human DNA sequence from clone RP11-326A14 on chromosome Xq13.3-21.2 Contains the 3' end of the RPS6KA6 gene for ribosomal protein S6 kinase, complete sequence Length = 173760 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 112 cactccaaagaaatagagca 131 |||||||||||||||||||| Sbjct: 90438 cactccaaagaaatagagca 90457
>gb|AC158310.3| Mus musculus chromosome 5, clone RP23-106N8, complete sequence Length = 218714 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 260 ctggccttggattccgagat 279 |||||||||||||||||||| Sbjct: 208254 ctggccttggattccgagat 208235 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 260 ctggccttggattccgagat 279 |||||||||||||||||||| Sbjct: 207813 ctggccttggattccgagat 207794
>gb|AC105987.21| Mus musculus chromosome 5, clone RP24-446I1, complete sequence Length = 192043 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 260 ctggccttggattccgagat 279 |||||||||||||||||||| Sbjct: 56858 ctggccttggattccgagat 56877 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 260 ctggccttggattccgagat 279 |||||||||||||||||||| Sbjct: 56417 ctggccttggattccgagat 56436
>gb|AC182493.3| Pan troglodytes BAC clone CH251-215H7 from chromosome 15, complete sequence Length = 156271 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 115 tccaaagaaatagagcaaca 134 |||||||||||||||||||| Sbjct: 113387 tccaaagaaatagagcaaca 113406
>gb|AC009196.14| Homo sapiens chromosome 7 clone RP11-49B7, complete sequence Length = 170763 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 actccccagttttgttttgt 93 |||||||||||||||||||| Sbjct: 83532 actccccagttttgttttgt 83551
>dbj|AK039782.1| Mus musculus adult male spinal cord cDNA, RIKEN full-length enriched library, clone:A330107O19 product:unclassifiable, full insert sequence Length = 3271 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 143 gctcaaatcagagttctcat 162 |||||||||||||||||||| Sbjct: 53 gctcaaatcagagttctcat 72
>gb|AC155318.2| Ornithorhynchus anatinus chromosome UNK clone OABb-158A1, complete sequence Length = 163918 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 122 aaatagagcaacacatttac 141 |||||||||||||||||||| Sbjct: 115103 aaatagagcaacacatttac 115122
>gb|AC066615.7|AC066615 Homo sapiens chromosome 15 clone RP11-90J19 map 15q21.1, complete sequence Length = 175001 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 115 tccaaagaaatagagcaaca 134 |||||||||||||||||||| Sbjct: 84807 tccaaagaaatagagcaaca 84826
>gb|AC078844.2|AC078844 Homo sapiens chromosome 7 clone RP11-786M13, complete sequence Length = 186927 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 actccccagttttgttttgt 93 |||||||||||||||||||| Sbjct: 165136 actccccagttttgttttgt 165155
>emb|CT030184.14| Mouse DNA sequence from clone RP23-9C19 on chromosome 13, complete sequence Length = 201341 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 143 gctcaaatcagagttctcat 162 |||||||||||||||||||| Sbjct: 149682 gctcaaatcagagttctcat 149663
>gb|AC160563.2| Ornithorhynchus anatinus BAC clone OABb-456P24 from chromosome unknown, complete sequence Length = 152763 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 95 ccaccgcccagcctgtacactcca 118 |||| ||||||||||||||||||| Sbjct: 65992 ccacagcccagcctgtacactcca 66015
>emb|CT030166.8| Mouse DNA sequence from clone RP23-320I11 on chromosome 13, complete sequence Length = 222942 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 143 gctcaaatcagagttctcat 162 |||||||||||||||||||| Sbjct: 55382 gctcaaatcagagttctcat 55363
>dbj|AP006627.1| Bacillus clausii KSM-K16 DNA, complete genome Length = 4303871 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 62 gcggcattagccactcccca 81 |||||||||||||||||||| Sbjct: 3897369 gcggcattagccactcccca 3897388
>gb|L06275.1|AGMSN5HMS African green monkey centromeric SN5 satellite DNA sequence homolog Length = 410 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 353 gttgtcctgggggtcctaggggtg 376 |||||||||| ||||||||||||| Sbjct: 14 gttgtcctggtggtcctaggggtg 37 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,687,235 Number of Sequences: 3902068 Number of extensions: 3687235 Number of successful extensions: 56656 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 21 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 56594 Number of HSP's gapped (non-prelim): 62 length of query: 383 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 361 effective length of database: 17,147,199,772 effective search space: 6190139117692 effective search space used: 6190139117692 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)