ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl53c09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_473987.1| Oryza sativa (japonica cultivar-group), predic... 48 0.021
2dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.021
3dbj|AK121640.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.021
4emb|AL662988.4|OSJN00186 Oryza sativa genomic DNA, chromosome 4,... 48 0.021
5emb|AL807374.1|NCB13H18 Neurospora crassa DNA linkage group V BA... 42 1.3
6ref|XM_623682.1| PREDICTED: Apis mellifera similar to GA11263-PA... 42 1.3
7gb|AC184054.2| Pan troglodytes BAC clone CH251-706J5 from chromo... 40 5.1
8emb|AL354653.26| Human DNA sequence from clone RP11-326A14 on ch... 40 5.1
9gb|AC158310.3| Mus musculus chromosome 5, clone RP23-106N8, comp... 40 5.1
10gb|AC105987.21| Mus musculus chromosome 5, clone RP24-446I1, com... 40 5.1
11gb|AC182493.3| Pan troglodytes BAC clone CH251-215H7 from chromo... 40 5.1
12gb|AC009196.14| Homo sapiens chromosome 7 clone RP11-49B7, compl... 40 5.1
13dbj|AK039782.1| Mus musculus adult male spinal cord cDNA, RIKEN ... 40 5.1
14gb|AC155318.2| Ornithorhynchus anatinus chromosome UNK clone OAB... 40 5.1
15gb|AC066615.7|AC066615 Homo sapiens chromosome 15 clone RP11-90J... 40 5.1
16gb|AC078844.2|AC078844 Homo sapiens chromosome 7 clone RP11-786M... 40 5.1
17emb|CT030184.14| Mouse DNA sequence from clone RP23-9C19 on chro... 40 5.1
18gb|AC160563.2| Ornithorhynchus anatinus BAC clone OABb-456P24 fr... 40 5.1
19emb|CT030166.8| Mouse DNA sequence from clone RP23-320I11 on chr... 40 5.1
20dbj|AP006627.1| Bacillus clausii KSM-K16 DNA, complete genome 40 5.1
21gb|L06275.1|AGMSN5HMS African green monkey centromeric SN5 satel... 40 5.1

>ref|XM_473987.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3582

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 57/68 (83%)
 Strand = Plus / Minus

                                                                        
Query: 149  atcagagttctcattctcgtcaccagggactgcatgctctccagcttgtcggtcagctgc 208
            |||| |||||||| | | ||||||| ||| ||||||||||| ||||||||  |||  |||
Sbjct: 3578 atcaaagttctcaattttgtcaccaaggattgcatgctctctagcttgtcattcaattgc 3519

                    
Query: 209  ctgatgtc 216
            ||||||||
Sbjct: 3518 ctgatgtc 3511



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 57/68 (83%)
 Strand = Plus / Plus

                                                                            
Query: 149      atcagagttctcattctcgtcaccagggactgcatgctctccagcttgtcggtcagctgc 208
                |||| |||||||| | | ||||||| ||| ||||||||||| ||||||||  |||  |||
Sbjct: 32016557 atcaaagttctcaattttgtcaccaaggattgcatgctctctagcttgtcattcaattgc 32016616

                        
Query: 209      ctgatgtc 216
                ||||||||
Sbjct: 32016617 ctgatgtc 32016624



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>dbj|AK121640.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033055A13, full
            insert sequence
          Length = 4117

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 57/68 (83%)
 Strand = Plus / Minus

                                                                        
Query: 149  atcagagttctcattctcgtcaccagggactgcatgctctccagcttgtcggtcagctgc 208
            |||| |||||||| | | ||||||| ||| ||||||||||| ||||||||  |||  |||
Sbjct: 3828 atcaaagttctcaattttgtcaccaaggattgcatgctctctagcttgtcattcaattgc 3769

                    
Query: 209  ctgatgtc 216
            ||||||||
Sbjct: 3768 ctgatgtc 3761



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>emb|AL662988.4|OSJN00186 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0089N06,
             complete sequence
          Length = 141752

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 57/68 (83%)
 Strand = Plus / Plus

                                                                         
Query: 149   atcagagttctcattctcgtcaccagggactgcatgctctccagcttgtcggtcagctgc 208
             |||| |||||||| | | ||||||| ||| ||||||||||| ||||||||  |||  |||
Sbjct: 37264 atcaaagttctcaattttgtcaccaaggattgcatgctctctagcttgtcattcaattgc 37323

                     
Query: 209   ctgatgtc 216
             ||||||||
Sbjct: 37324 ctgatgtc 37331



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>emb|AL807374.1|NCB13H18 Neurospora crassa DNA linkage group V BAC contig B13H18
          Length = 122576

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 73    cactccccagttttgttttgt 93
             |||||||||||||||||||||
Sbjct: 95326 cactccccagttttgttttgt 95306



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>ref|XM_623682.1| PREDICTED: Apis mellifera similar to GA11263-PA (LOC408421), mRNA
          Length = 2275

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                   
Query: 23 tgtacacaaacgaaagaataatttc 47
          |||||||||| ||||||||||||||
Sbjct: 81 tgtacacaaaagaaagaataatttc 57



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>gb|AC184054.2| Pan troglodytes BAC clone CH251-706J5 from chromosome 15, complete
              sequence
          Length = 177821

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 115    tccaaagaaatagagcaaca 134
              ||||||||||||||||||||
Sbjct: 160409 tccaaagaaatagagcaaca 160428



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>emb|AL354653.26| Human DNA sequence from clone RP11-326A14 on chromosome Xq13.3-21.2
             Contains the 3' end of the RPS6KA6 gene for ribosomal
             protein S6 kinase, complete sequence
          Length = 173760

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 112   cactccaaagaaatagagca 131
             ||||||||||||||||||||
Sbjct: 90438 cactccaaagaaatagagca 90457



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>gb|AC158310.3| Mus musculus chromosome 5, clone RP23-106N8, complete sequence
          Length = 218714

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 260    ctggccttggattccgagat 279
              ||||||||||||||||||||
Sbjct: 208254 ctggccttggattccgagat 208235



 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 260    ctggccttggattccgagat 279
              ||||||||||||||||||||
Sbjct: 207813 ctggccttggattccgagat 207794



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>gb|AC105987.21| Mus musculus chromosome 5, clone RP24-446I1, complete sequence
          Length = 192043

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 260   ctggccttggattccgagat 279
             ||||||||||||||||||||
Sbjct: 56858 ctggccttggattccgagat 56877



 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 260   ctggccttggattccgagat 279
             ||||||||||||||||||||
Sbjct: 56417 ctggccttggattccgagat 56436



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>gb|AC182493.3| Pan troglodytes BAC clone CH251-215H7 from chromosome 15, complete
              sequence
          Length = 156271

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 115    tccaaagaaatagagcaaca 134
              ||||||||||||||||||||
Sbjct: 113387 tccaaagaaatagagcaaca 113406



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>gb|AC009196.14| Homo sapiens chromosome 7 clone RP11-49B7, complete sequence
          Length = 170763

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 74    actccccagttttgttttgt 93
             ||||||||||||||||||||
Sbjct: 83532 actccccagttttgttttgt 83551



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>dbj|AK039782.1| Mus musculus adult male spinal cord cDNA, RIKEN full-length
           enriched library, clone:A330107O19
           product:unclassifiable, full insert sequence
          Length = 3271

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 143 gctcaaatcagagttctcat 162
           ||||||||||||||||||||
Sbjct: 53  gctcaaatcagagttctcat 72



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>gb|AC155318.2| Ornithorhynchus anatinus chromosome UNK clone OABb-158A1, complete
              sequence
          Length = 163918

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 122    aaatagagcaacacatttac 141
              ||||||||||||||||||||
Sbjct: 115103 aaatagagcaacacatttac 115122



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>gb|AC066615.7|AC066615 Homo sapiens chromosome 15 clone RP11-90J19 map 15q21.1, complete
             sequence
          Length = 175001

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 115   tccaaagaaatagagcaaca 134
             ||||||||||||||||||||
Sbjct: 84807 tccaaagaaatagagcaaca 84826



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>gb|AC078844.2|AC078844 Homo sapiens chromosome 7 clone RP11-786M13, complete sequence
          Length = 186927

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 74     actccccagttttgttttgt 93
              ||||||||||||||||||||
Sbjct: 165136 actccccagttttgttttgt 165155



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>emb|CT030184.14| Mouse DNA sequence from clone RP23-9C19 on chromosome 13, complete
              sequence
          Length = 201341

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 143    gctcaaatcagagttctcat 162
              ||||||||||||||||||||
Sbjct: 149682 gctcaaatcagagttctcat 149663



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>gb|AC160563.2| Ornithorhynchus anatinus BAC clone OABb-456P24 from chromosome unknown,
             complete sequence
          Length = 152763

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 95    ccaccgcccagcctgtacactcca 118
             |||| |||||||||||||||||||
Sbjct: 65992 ccacagcccagcctgtacactcca 66015



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>emb|CT030166.8| Mouse DNA sequence from clone RP23-320I11 on chromosome 13, complete
             sequence
          Length = 222942

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 143   gctcaaatcagagttctcat 162
             ||||||||||||||||||||
Sbjct: 55382 gctcaaatcagagttctcat 55363



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>dbj|AP006627.1| Bacillus clausii KSM-K16 DNA, complete genome
          Length = 4303871

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 62      gcggcattagccactcccca 81
               ||||||||||||||||||||
Sbjct: 3897369 gcggcattagccactcccca 3897388



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>gb|L06275.1|AGMSN5HMS African green monkey centromeric SN5 satellite DNA sequence homolog
          Length = 410

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 353 gttgtcctgggggtcctaggggtg 376
           |||||||||| |||||||||||||
Sbjct: 14  gttgtcctggtggtcctaggggtg 37


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,687,235
Number of Sequences: 3902068
Number of extensions: 3687235
Number of successful extensions: 56656
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 56594
Number of HSP's gapped (non-prelim): 62
length of query: 383
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 361
effective length of database: 17,147,199,772
effective search space: 6190139117692
effective search space used: 6190139117692
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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