ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl53c07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TENS1_BOVIN (Q9GLM4) Tensin-1 27 9.0
2Y168_ADE02 (P03292) Hypothetical protein C-168 27 9.0
3GLMS_MYCLE (P40831) Glucosamine--fructose-6-phosphate aminotrans... 27 9.0
4LCE1E_HUMAN (Q5T753) Late cornified envelope protein 1E (Late en... 27 9.0
5LTBP3_HUMAN (Q9NS15) Latent transforming growth factor beta-bind... 27 9.0

>TENS1_BOVIN (Q9GLM4) Tensin-1|
          Length = 1715

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 9/37 (24%)
 Frame = -3

Query: 234  GTPQQCRHPGASMGT---------VATPSAPRTVKHV 151
            G+P   RHPGA  GT         VA+P +P   +H+
Sbjct: 1247 GSPSLGRHPGAHQGTLASNLHSNAVASPGSPSLGRHL 1283



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>Y168_ADE02 (P03292) Hypothetical protein C-168|
          Length = 168

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +1

Query: 217 ALLRSTHNCVMNSPPAPSISAWMSTLSEG-ARKSMNSAQN 333
           AL    +NC + +PP   +S   ST SE  +RK+ N +Q+
Sbjct: 103 ALTMHLNNCCVGTPPPRDLSESASTGSENLSRKASNQSQS 142



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>GLMS_MYCLE (P40831) Glucosamine--fructose-6-phosphate aminotransferase|
           [isomerizing] (EC 2.6.1.16) (Hexosephosphate
           aminotransferase) (D-fructose-6-phosphate
           amidotransferase) (GFAT)
           (L-glutamine-D-fructose-6-phosphate amidotransferase)
           (Glucosamine-6-ph
          Length = 624

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 6/33 (18%)
 Frame = +3

Query: 216 GIVEEYPQLRHEL-AAGTEHLG-----VDVHVV 296
           GI+E +P LRHEL  AG E +      V VH+V
Sbjct: 107 GIIENFPSLRHELEIAGVEFVSDTDTEVAVHLV 139



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>LCE1E_HUMAN (Q5T753) Late cornified envelope protein 1E (Late envelope protein|
           5)
          Length = 118

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 20/57 (35%), Positives = 23/57 (40%)
 Frame = -2

Query: 394 SAGSSCRPCPTKGGDGRCWRXXXXXXXXXSRPQTTWTSTPRCSVPAASS*RSCGYSS 224
           S GSS   C + GG G C            RPQ    S+  CS P+  S   CG  S
Sbjct: 59  SCGSSSGGCCSSGGGGCCLSHHRHHRSHRHRPQ----SSDCCSQPSGGS-SCCGGGS 110



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>LTBP3_HUMAN (Q9NS15) Latent transforming growth factor beta-binding protein 3|
            precursor (LTBP-3)
          Length = 1302

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 388  GSSCRPCPTKGGDGRC 341
            G+ CRPCP +G    C
Sbjct: 1170 GAQCRPCPPRGAGSHC 1185


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,737,332
Number of Sequences: 219361
Number of extensions: 1078805
Number of successful extensions: 2778
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2778
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 1365190992
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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