ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl53c05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC146079.2| Pan troglodytes BAC clone RP43-46C10 from 7, comp... 44 0.35
2gb|AC004741.2| Homo sapiens PAC clone RP4-754J18 from 7, complet... 44 0.35
3gb|BC076438.1| Danio rerio inositol(myo)-1(or 4)-monophosphatase... 44 0.35
4ref|NM_001002745.1| Danio rerio inositol(myo)-1(or 4)-monophosph... 44 0.35
5ref|XM_696311.1| PREDICTED: Danio rerio hypothetical protein LOC... 44 0.35
6emb|BX248497.11| Zebrafish DNA sequence from clone DKEY-181M9 in... 44 0.35
7ref|NM_139077.1| Danio rerio NIMA (never in mitosis gene a)-rela... 42 1.4
8gb|AY558077.1| Saccharomyces cerevisiae clone FLH113455.01X YBL0... 42 1.4
9emb|X79489.1|SCDNCH2 S.cerevisiae genomic DNA, chromosome II fro... 42 1.4
10emb|Z35858.1|SCYBL097W S.cerevisiae chromosome II reading frame ... 42 1.4
11emb|CR392353.6| Zebrafish DNA sequence from clone CH211-9D19 in ... 42 1.4
12emb|AL671672.4| Mouse DNA sequence from clone RP23-461E2 on chro... 42 1.4
13gb|AF407580.1| Danio rerio NIMA-related kinase 8 (nek8) mRNA, co... 42 1.4
14ref|XM_843462.1| PREDICTED: Canis familiaris similar to ATP bind... 40 5.5
15gb|AC124992.14| Mus musculus chromosome 10, clone RP23-149L10, c... 40 5.5
16gb|AC125087.2| Mus musculus BAC clone RP24-143E18 from chromosom... 40 5.5
17gb|AC124685.5| Mus musculus BAC clone RP24-385O22 from chromosom... 40 5.5
18emb|AL138830.20| Human DNA sequence from clone RP3-399L15 on chr... 40 5.5
19gb|CP000089.1| Dechloromonas aromatica RCB, complete genome 40 5.5
20gb|AC157572.4| Mus musculus BAC clone RP23-79O10 from chromosome... 40 5.5
21gb|AC019193.7| Homo sapiens BAC clone RP11-335L23 from 4, comple... 40 5.5
22gb|AC012147.7|AC012147 Mus musculus, clone RP23-191A4, complete ... 40 5.5
23gb|AC144600.3| Didelphis virginiana clone LB3-100O6, complete se... 40 5.5
24gb|DP000023.1| Didelphis virginiana target 1 genomic scaffold 40 5.5
25emb|AL928689.7| Mouse DNA sequence from clone RP23-35P3 on chrom... 40 5.5

>gb|AC146079.2| Pan troglodytes BAC clone RP43-46C10 from 7, complete sequence
          Length = 186437

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 306   aactgctatttctctagcatga 327
             ||||||||||||||||||||||
Sbjct: 96398 aactgctatttctctagcatga 96419



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>gb|AC004741.2| Homo sapiens PAC clone RP4-754J18 from 7, complete sequence
          Length = 112242

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 306   aactgctatttctctagcatga 327
             ||||||||||||||||||||||
Sbjct: 68044 aactgctatttctctagcatga 68065



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>gb|BC076438.1| Danio rerio inositol(myo)-1(or 4)-monophosphatase 1, mRNA (cDNA
           clone MGC:100926 IMAGE:7145589), complete cds
          Length = 1310

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 314 tttctctagcatgaggaagatc 335
           ||||||||||||||||||||||
Sbjct: 774 tttctctagcatgaggaagatc 795



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>ref|NM_001002745.1| Danio rerio inositol(myo)-1(or 4)-monophosphatase 1 (impa1), mRNA
          Length = 1310

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 314 tttctctagcatgaggaagatc 335
           ||||||||||||||||||||||
Sbjct: 774 tttctctagcatgaggaagatc 795



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>ref|XM_696311.1| PREDICTED: Danio rerio hypothetical protein LOC554418 (LOC554418),
           mRNA
          Length = 1258

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 314 tttctctagcatgaggaagatc 335
           ||||||||||||||||||||||
Sbjct: 753 tttctctagcatgaggaagatc 774



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>emb|BX248497.11| Zebrafish DNA sequence from clone DKEY-181M9 in linkage group 2, complete
              sequence
          Length = 145610

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 314    tttctctagcatgaggaagatc 335
              ||||||||||||||||||||||
Sbjct: 105770 tttctctagcatgaggaagatc 105791



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>ref|NM_139077.1| Danio rerio NIMA (never in mitosis gene a)-related kinase 8 (nek8),
            mRNA
          Length = 2816

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 111  ttctgtatttgcagtattaca 131
            |||||||||||||||||||||
Sbjct: 2606 ttctgtatttgcagtattaca 2626



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>gb|AY558077.1| Saccharomyces cerevisiae clone FLH113455.01X YBL097W gene, complete
            cds
          Length = 2188

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 159  tttttgtcagtagtatctcct 179
            |||||||||||||||||||||
Sbjct: 1241 tttttgtcagtagtatctcct 1221



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>emb|X79489.1|SCDNCH2 S.cerevisiae genomic DNA, chromosome II from Y element to ILS1 gene
          Length = 78600

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 159   tttttgtcagtagtatctcct 179
             |||||||||||||||||||||
Sbjct: 36184 tttttgtcagtagtatctcct 36164



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>emb|Z35858.1|SCYBL097W S.cerevisiae chromosome II reading frame ORF YBL097w
          Length = 2654

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 159  tttttgtcagtagtatctcct 179
            |||||||||||||||||||||
Sbjct: 1627 tttttgtcagtagtatctcct 1607



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>emb|CR392353.6| Zebrafish DNA sequence from clone CH211-9D19 in linkage group 11,
             complete sequence
          Length = 183599

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 111   ttctgtatttgcagtattaca 131
             |||||||||||||||||||||
Sbjct: 34488 ttctgtatttgcagtattaca 34508



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>emb|AL671672.4| Mouse DNA sequence from clone RP23-461E2 on chromosome 4, complete
             sequence
          Length = 191255

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 304   ggaactgctatttctctagca 324
             |||||||||||||||||||||
Sbjct: 90527 ggaactgctatttctctagca 90507



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>gb|AF407580.1| Danio rerio NIMA-related kinase 8 (nek8) mRNA, complete cds
          Length = 2816

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 111  ttctgtatttgcagtattaca 131
            |||||||||||||||||||||
Sbjct: 2606 ttctgtatttgcagtattaca 2626



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>ref|XM_843462.1| PREDICTED: Canis familiaris similar to ATP binding cassette,
            sub-family A (ABC1), member 13 (LOC606966), mRNA
          Length = 7089

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 220  ccacctggacgaggcggagg 239
            ||||||||||||||||||||
Sbjct: 3879 ccacctggacgaggcggagg 3898



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>gb|AC124992.14| Mus musculus chromosome 10, clone RP23-149L10, complete sequence
          Length = 194736

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 146    attggcactaggatttttgt 165
              ||||||||||||||||||||
Sbjct: 101535 attggcactaggatttttgt 101516



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>gb|AC125087.2| Mus musculus BAC clone RP24-143E18 from chromosome 14, complete sequence
          Length = 180794

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 198    agttcctgggtagtggtaag 217
              ||||||||||||||||||||
Sbjct: 149900 agttcctgggtagtggtaag 149919



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>gb|AC124685.5| Mus musculus BAC clone RP24-385O22 from chromosome 2, complete sequence
          Length = 174583

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 140   catggaattggcactaggat 159
             ||||||||||||||||||||
Sbjct: 62981 catggaattggcactaggat 63000



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>emb|AL138830.20| Human DNA sequence from clone RP3-399L15 on chromosome 6q21-22.2 Contains
              2 putative novel genes, complete sequence
          Length = 141924

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 7      aacataaattgaaaacctaa 26
              ||||||||||||||||||||
Sbjct: 111784 aacataaattgaaaacctaa 111803



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>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome
          Length = 4501104

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 356     atggtgcgcttctcggctga 375
               ||||||||||||||||||||
Sbjct: 3304700 atggtgcgcttctcggctga 3304719



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>gb|AC157572.4| Mus musculus BAC clone RP23-79O10 from chromosome 14, complete sequence
          Length = 242759

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 198    agttcctgggtagtggtaag 217
              ||||||||||||||||||||
Sbjct: 204677 agttcctgggtagtggtaag 204658



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>gb|AC019193.7| Homo sapiens BAC clone RP11-335L23 from 4, complete sequence
          Length = 177720

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 106    aaacgttctgtatttgcagt 125
              ||||||||||||||||||||
Sbjct: 134158 aaacgttctgtatttgcagt 134139



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>gb|AC012147.7|AC012147 Mus musculus, clone RP23-191A4, complete sequence
          Length = 217034

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 326    gaggaagatcatcaatgtga 345
              ||||||||||||||||||||
Sbjct: 121058 gaggaagatcatcaatgtga 121077



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>gb|AC144600.3| Didelphis virginiana clone LB3-100O6, complete sequence
          Length = 182571

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 370    ggctgatcatacacataggt 389
              ||||||||||||||||||||
Sbjct: 143766 ggctgatcatacacataggt 143747



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>gb|DP000023.1| Didelphis virginiana target 1 genomic scaffold
          Length = 1751794

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 370    ggctgatcatacacataggt 389
              ||||||||||||||||||||
Sbjct: 986852 ggctgatcatacacataggt 986833



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>emb|AL928689.7| Mouse DNA sequence from clone RP23-35P3 on chromosome 2, complete
              sequence
          Length = 182529

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 140    catggaattggcactaggat 159
              ||||||||||||||||||||
Sbjct: 172432 catggaattggcactaggat 172451


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,552,857
Number of Sequences: 3902068
Number of extensions: 3552857
Number of successful extensions: 58838
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 58786
Number of HSP's gapped (non-prelim): 52
length of query: 411
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 389
effective length of database: 17,147,199,772
effective search space: 6670260711308
effective search space used: 6670260711308
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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