Clone Name | rbastl53c05 |
---|---|
Clone Library Name | barley_pub |
>gb|AC146079.2| Pan troglodytes BAC clone RP43-46C10 from 7, complete sequence Length = 186437 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Plus Query: 306 aactgctatttctctagcatga 327 |||||||||||||||||||||| Sbjct: 96398 aactgctatttctctagcatga 96419
>gb|AC004741.2| Homo sapiens PAC clone RP4-754J18 from 7, complete sequence Length = 112242 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Plus Query: 306 aactgctatttctctagcatga 327 |||||||||||||||||||||| Sbjct: 68044 aactgctatttctctagcatga 68065
>gb|BC076438.1| Danio rerio inositol(myo)-1(or 4)-monophosphatase 1, mRNA (cDNA clone MGC:100926 IMAGE:7145589), complete cds Length = 1310 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Plus Query: 314 tttctctagcatgaggaagatc 335 |||||||||||||||||||||| Sbjct: 774 tttctctagcatgaggaagatc 795
>ref|NM_001002745.1| Danio rerio inositol(myo)-1(or 4)-monophosphatase 1 (impa1), mRNA Length = 1310 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Plus Query: 314 tttctctagcatgaggaagatc 335 |||||||||||||||||||||| Sbjct: 774 tttctctagcatgaggaagatc 795
>ref|XM_696311.1| PREDICTED: Danio rerio hypothetical protein LOC554418 (LOC554418), mRNA Length = 1258 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Plus Query: 314 tttctctagcatgaggaagatc 335 |||||||||||||||||||||| Sbjct: 753 tttctctagcatgaggaagatc 774
>emb|BX248497.11| Zebrafish DNA sequence from clone DKEY-181M9 in linkage group 2, complete sequence Length = 145610 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Plus Query: 314 tttctctagcatgaggaagatc 335 |||||||||||||||||||||| Sbjct: 105770 tttctctagcatgaggaagatc 105791
>ref|NM_139077.1| Danio rerio NIMA (never in mitosis gene a)-related kinase 8 (nek8), mRNA Length = 2816 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 111 ttctgtatttgcagtattaca 131 ||||||||||||||||||||| Sbjct: 2606 ttctgtatttgcagtattaca 2626
>gb|AY558077.1| Saccharomyces cerevisiae clone FLH113455.01X YBL097W gene, complete cds Length = 2188 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 159 tttttgtcagtagtatctcct 179 ||||||||||||||||||||| Sbjct: 1241 tttttgtcagtagtatctcct 1221
>emb|X79489.1|SCDNCH2 S.cerevisiae genomic DNA, chromosome II from Y element to ILS1 gene Length = 78600 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 159 tttttgtcagtagtatctcct 179 ||||||||||||||||||||| Sbjct: 36184 tttttgtcagtagtatctcct 36164
>emb|Z35858.1|SCYBL097W S.cerevisiae chromosome II reading frame ORF YBL097w Length = 2654 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 159 tttttgtcagtagtatctcct 179 ||||||||||||||||||||| Sbjct: 1627 tttttgtcagtagtatctcct 1607
>emb|CR392353.6| Zebrafish DNA sequence from clone CH211-9D19 in linkage group 11, complete sequence Length = 183599 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 111 ttctgtatttgcagtattaca 131 ||||||||||||||||||||| Sbjct: 34488 ttctgtatttgcagtattaca 34508
>emb|AL671672.4| Mouse DNA sequence from clone RP23-461E2 on chromosome 4, complete sequence Length = 191255 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 304 ggaactgctatttctctagca 324 ||||||||||||||||||||| Sbjct: 90527 ggaactgctatttctctagca 90507
>gb|AF407580.1| Danio rerio NIMA-related kinase 8 (nek8) mRNA, complete cds Length = 2816 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 111 ttctgtatttgcagtattaca 131 ||||||||||||||||||||| Sbjct: 2606 ttctgtatttgcagtattaca 2626
>ref|XM_843462.1| PREDICTED: Canis familiaris similar to ATP binding cassette, sub-family A (ABC1), member 13 (LOC606966), mRNA Length = 7089 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 220 ccacctggacgaggcggagg 239 |||||||||||||||||||| Sbjct: 3879 ccacctggacgaggcggagg 3898
>gb|AC124992.14| Mus musculus chromosome 10, clone RP23-149L10, complete sequence Length = 194736 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 146 attggcactaggatttttgt 165 |||||||||||||||||||| Sbjct: 101535 attggcactaggatttttgt 101516
>gb|AC125087.2| Mus musculus BAC clone RP24-143E18 from chromosome 14, complete sequence Length = 180794 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 198 agttcctgggtagtggtaag 217 |||||||||||||||||||| Sbjct: 149900 agttcctgggtagtggtaag 149919
>gb|AC124685.5| Mus musculus BAC clone RP24-385O22 from chromosome 2, complete sequence Length = 174583 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 140 catggaattggcactaggat 159 |||||||||||||||||||| Sbjct: 62981 catggaattggcactaggat 63000
>emb|AL138830.20| Human DNA sequence from clone RP3-399L15 on chromosome 6q21-22.2 Contains 2 putative novel genes, complete sequence Length = 141924 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 aacataaattgaaaacctaa 26 |||||||||||||||||||| Sbjct: 111784 aacataaattgaaaacctaa 111803
>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome Length = 4501104 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 356 atggtgcgcttctcggctga 375 |||||||||||||||||||| Sbjct: 3304700 atggtgcgcttctcggctga 3304719
>gb|AC157572.4| Mus musculus BAC clone RP23-79O10 from chromosome 14, complete sequence Length = 242759 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 agttcctgggtagtggtaag 217 |||||||||||||||||||| Sbjct: 204677 agttcctgggtagtggtaag 204658
>gb|AC019193.7| Homo sapiens BAC clone RP11-335L23 from 4, complete sequence Length = 177720 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 aaacgttctgtatttgcagt 125 |||||||||||||||||||| Sbjct: 134158 aaacgttctgtatttgcagt 134139
>gb|AC012147.7|AC012147 Mus musculus, clone RP23-191A4, complete sequence Length = 217034 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 326 gaggaagatcatcaatgtga 345 |||||||||||||||||||| Sbjct: 121058 gaggaagatcatcaatgtga 121077
>gb|AC144600.3| Didelphis virginiana clone LB3-100O6, complete sequence Length = 182571 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 370 ggctgatcatacacataggt 389 |||||||||||||||||||| Sbjct: 143766 ggctgatcatacacataggt 143747
>gb|DP000023.1| Didelphis virginiana target 1 genomic scaffold Length = 1751794 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 370 ggctgatcatacacataggt 389 |||||||||||||||||||| Sbjct: 986852 ggctgatcatacacataggt 986833
>emb|AL928689.7| Mouse DNA sequence from clone RP23-35P3 on chromosome 2, complete sequence Length = 182529 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 140 catggaattggcactaggat 159 |||||||||||||||||||| Sbjct: 172432 catggaattggcactaggat 172451 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,552,857 Number of Sequences: 3902068 Number of extensions: 3552857 Number of successful extensions: 58838 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 25 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 58786 Number of HSP's gapped (non-prelim): 52 length of query: 411 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 389 effective length of database: 17,147,199,772 effective search space: 6670260711308 effective search space used: 6670260711308 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)