>CS120_WHEAT (P46525) Cold-shock protein CS120|
          Length = 391

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
 Frame = +1

Query: 238 TATTGLRSIAHSIQKSG---SYLHKVKNGHQDHQESG 339
           T  TGL   AH+ +K G   +   K+  GHQDHQ++G
Sbjct: 61  TTGTGLHG-AHAGEKKGVMENIKDKLPGGHQDHQQTG 96

>R1AB_CVM2 (Q9PYA3) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)|
            [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)]
            [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like
            proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44);
            3C-like proteinase (
          Length = 7124

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -3

Query: 187  TIVKLRNRVLLFYRMLFNLSPSCSLWCYLKNLHDHLLDMSKLII 56
            T VK  N VLL      +++ S  LW Y   LH+ +L  S L +
Sbjct: 3873 TDVKCVNVVLLNCLQHLHIASSSKLWQYCSTLHNEILATSDLSV 3916

>RPOA_PRRSL (Q04561) Replicase polyprotein 1ab (ORF1ab polyprotein) [Includes:|
            Replicase polyprotein 1a (ORF1a)] [Contains: Nsp1-alpha
            papain-like cysteine proteinase (EC 3.4.22.-)
            (PCP1-alpha); Nsp1-beta papain-like cysteine proteinase
            (EC 3.4.22.-) (PCP
          Length = 3859

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -2

Query: 317  CPFFTLWRYEPDFWME*AIERSPVVAVGLVVSAELL 210
            C FF LWR     W       +P+VAVG  +  E+L
Sbjct: 1906 CVFFLLWRMMGHAW-------TPIVAVGFFLLNEIL 1934

>RPOA_PRRSB (Q8B912) Replicase polyprotein 1ab (ORF1ab polyprotein) [Includes:|
            Replicase polyprotein 1a (ORF1a)] [Contains: Nsp1-alpha
            papain-like cysteine proteinase (EC 3.4.22.-)
            (PCP1-alpha); Nsp1-beta papain-like cysteine proteinase
            (EC 3.4.22.-) (PCP
          Length = 3963

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -2

Query: 317  CPFFTLWRYEPDFWME*AIERSPVVAVGLVVSAELL 210
            C FF LWR     W       +P+VAVG  +  E+L
Sbjct: 2023 CVFFLLWRMMGHAW-------TPLVAVGFFILNEIL 2051

>R1AB_CVMJH (P19751) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)|
            [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)]
            [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like
            proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44);
            3C-like proteinase
          Length = 7180

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -3

Query: 187  TIVKLRNRVLLFYRMLFNLSPSCSLWCYLKNLHDHLLDMSKLII 56
            T VK  N VLL      +++ +  LW Y   LH+ +L  S L +
Sbjct: 3931 TDVKCANVVLLNCLQHLHIASNSKLWQYCSTLHNEILATSDLSV 3974

>TECTA_MOUSE (O08523) Alpha-tectorin precursor|
          Length = 2155

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = -3

Query: 328  DGLDAH--FSLYGGMNQTSGWSELLNAVLLWRWDWLYQQNCYGVNEVPCTIVKLRNR 164
            DG   H  F L G +   + + E   +  +   +W+ ++NC GV E PC      NR
Sbjct: 1720 DGCYNHKKFQLCGSL---AAYGEACRSFGILSTEWIEKENCSGVVEDPCVGADCPNR 1773

>TECTA_HUMAN (O75443) Alpha-tectorin precursor|
          Length = 2155

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = -3

Query: 328  DGLDAH--FSLYGGMNQTSGWSELLNAVLLWRWDWLYQQNCYGVNEVPCTIVKLRNR 164
            DG   H  F L G +   + + E   +  +   +W+ ++NC GV E PC      NR
Sbjct: 1720 DGCYNHKKFQLCGSL---AAYGEACRSFGILSTEWIEKENCSGVVEDPCVGADCPNR 1773


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,711,420
Number of Sequences: 219361
Number of extensions: 821216
Number of successful extensions: 1894
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1894
length of database: 80,573,946
effective HSP length: 89
effective length of database: 61,050,817
effective search space used: 1465219608
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)