ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl53c02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|BX323879.11| Zebrafish DNA sequence from clone DKEY-30L21 in... 40 4.5
2gb|AC126244.3| Mus musculus BAC clone RP24-319A6 from chromosome... 40 4.5
3emb|BX682558.6| Zebrafish DNA sequence from clone DKEY-225F5 in ... 40 4.5
4gb|AC157822.2| Mus musculus BAC clone RP23-392J15 from chromosom... 40 4.5
5emb|BX323553.3| Zebrafish DNA sequence from clone CH211-218C8 in... 40 4.5
6emb|CT025563.11| Mouse DNA sequence from clone RP23-472D20 on ch... 40 4.5
7emb|AL671493.12| Mouse DNA sequence from clone RP23-105O4 on chr... 40 4.5

>emb|BX323879.11| Zebrafish DNA sequence from clone DKEY-30L21 in linkage group 10,
              complete sequence
          Length = 243476

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 4      aattttgagtgaactatcac 23
              ||||||||||||||||||||
Sbjct: 107683 aattttgagtgaactatcac 107702



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>gb|AC126244.3| Mus musculus BAC clone RP24-319A6 from chromosome 12, complete sequence
          Length = 175549

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 84     tgatcatgcaaattctttaa 103
              ||||||||||||||||||||
Sbjct: 113157 tgatcatgcaaattctttaa 113176



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>emb|BX682558.6| Zebrafish DNA sequence from clone DKEY-225F5 in linkage group 3,
            complete sequence
          Length = 146807

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 4    aattttgagtgaactatcac 23
            ||||||||||||||||||||
Sbjct: 8668 aattttgagtgaactatcac 8687



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>gb|AC157822.2| Mus musculus BAC clone RP23-392J15 from chromosome 12, complete
             sequence
          Length = 185536

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 84    tgatcatgcaaattctttaa 103
             ||||||||||||||||||||
Sbjct: 93785 tgatcatgcaaattctttaa 93804



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>emb|BX323553.3| Zebrafish DNA sequence from clone CH211-218C8 in linkage group 2,
             complete sequence
          Length = 94088

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 45    attccagattgtataatgagcttg 68
             ||||||||||||| ||||||||||
Sbjct: 14140 attccagattgtaaaatgagcttg 14163



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>emb|CT025563.11| Mouse DNA sequence from clone RP23-472D20 on chromosome 14, complete
              sequence
          Length = 174286

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 215    attctgctgatacaaccagt 234
              ||||||||||||||||||||
Sbjct: 125747 attctgctgatacaaccagt 125728



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>emb|AL671493.12| Mouse DNA sequence from clone RP23-105O4 on chromosome X, complete
             sequence
          Length = 220631

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 21    cacagtgtaacctcaaatct 40
             ||||||||||||||||||||
Sbjct: 49582 cacagtgtaacctcaaatct 49563


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,941,611
Number of Sequences: 3902068
Number of extensions: 2941611
Number of successful extensions: 53669
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 53658
Number of HSP's gapped (non-prelim): 11
length of query: 342
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 320
effective length of database: 17,147,199,772
effective search space: 5487103927040
effective search space used: 5487103927040
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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