ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl53c01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1POLG_HCVGL (Q5EG65) Genome polyprotein [Contains: Core protein p... 29 2.8
2RLM1_YEAST (Q12224) Transcription factor RLM1 28 6.3
3POLG_HCVJ2 (P27959) Genome polyprotein [Contains: Core protein p... 28 8.2
4POLG_HCVH (P27958) Genome polyprotein [Contains: Core protein p2... 28 8.2
5POLG_HCV1 (P26664) Genome polyprotein [Contains: Core protein p2... 28 8.2
6POLG_HCVHK (Q01403) Genome polyprotein [Contains: Core protein p... 28 8.2
7POLG_HCVH4 (Q01404) Genome polyprotein [Contains: Core protein p... 28 8.2
8KCNH4_HUMAN (Q9UQ05) Potassium voltage-gated channel subfamily H... 28 8.2
9POLG_HCVJT (Q00269) Genome polyprotein [Contains: Core protein p... 28 8.2
10POLG_HCVJA (P26662) Genome polyprotein [Contains: Core protein p... 28 8.2
11POLG_HCVCO (Q9WMX2) Genome polyprotein [Contains: Core protein p... 28 8.2
12POLG_HCVBK (P26663) Genome polyprotein [Contains: Core protein p... 28 8.2

>POLG_HCVGL (Q5EG65) Genome polyprotein [Contains: Core protein p21 (Capsid|
           protein C) (p21); Core protein p19; Envelope
           glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2
           (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-)
           (p23)] (Fragment)
          Length = 828

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 17/42 (40%), Positives = 18/42 (42%), Gaps = 8/42 (19%)
 Frame = -1

Query: 237 NWACRCPTSFPSPGRRGPTWCSTSPRRRSR--------LTCG 136
           N  C      PSP    P+W    PRRRSR        LTCG
Sbjct: 87  NEGCGWAGWLPSPRGSRPSWGPNDPRRRSRNLGKVIDTLTCG 128



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>RLM1_YEAST (Q12224) Transcription factor RLM1|
          Length = 676

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 22/73 (30%), Positives = 32/73 (43%)
 Frame = +3

Query: 15  HLHKYKPLLKFYSVKMPRQNDQRVCIKYLPC*SMPCLSNSYHRSAYSAGGARLSTMSGPF 194
           HL + KP     S    +Q  Q +        S P  S+ Y+ +  S+  +  STM  P 
Sbjct: 191 HLKRLKPDPLQISRTPQQQQQQNI--------SRPYHSSMYNLNQPSSSSSSPSTMDFPK 242

Query: 195 SPATENSSGTGTP 233
            P+ +NSS  G P
Sbjct: 243 LPSFQNSSFNGRP 255



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>POLG_HCVJ2 (P27959) Genome polyprotein [Contains: Core protein p21 (Capsid|
           protein C) (p21); Core protein p19; Envelope
           glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2
           (NS1) (gp68) (gp70)] (Fragment)
          Length = 512

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 15/31 (48%), Positives = 16/31 (51%), Gaps = 8/31 (25%)
 Frame = -1

Query: 204 SPGRRGPTWCSTSPRRRSR--------LTCG 136
           SP    P+W  T PRRRSR        LTCG
Sbjct: 98  SPRGSRPSWGPTDPRRRSRNLGKVIDTLTCG 128



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>POLG_HCVH (P27958) Genome polyprotein [Contains: Core protein p21 (Capsid|
           protein C) (p21); Core protein p19; Envelope
           glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2
           (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-)
           (p23); Serine protease/NT
          Length = 3010

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 15/31 (48%), Positives = 16/31 (51%), Gaps = 8/31 (25%)
 Frame = -1

Query: 204 SPGRRGPTWCSTSPRRRSR--------LTCG 136
           SP    P+W  T PRRRSR        LTCG
Sbjct: 98  SPRGSRPSWGPTDPRRRSRNLGKVIDTLTCG 128



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>POLG_HCV1 (P26664) Genome polyprotein [Contains: Core protein p21 (Capsid|
           protein C) (p21); Core protein p19; Envelope
           glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2
           (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-)
           (p23); Serine protease/NT
          Length = 3010

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 15/31 (48%), Positives = 16/31 (51%), Gaps = 8/31 (25%)
 Frame = -1

Query: 204 SPGRRGPTWCSTSPRRRSR--------LTCG 136
           SP    P+W  T PRRRSR        LTCG
Sbjct: 98  SPRGSRPSWGPTDPRRRSRNLGKVIDTLTCG 128



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>POLG_HCVHK (Q01403) Genome polyprotein [Contains: Core protein p21 (Capsid|
           protein C) (p21); Core protein p19; Envelope
           glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2
           (NS1) (gp68) (gp70)] (Fragment)
          Length = 519

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 15/31 (48%), Positives = 16/31 (51%), Gaps = 8/31 (25%)
 Frame = -1

Query: 204 SPGRRGPTWCSTSPRRRSR--------LTCG 136
           SP    P+W  T PRRRSR        LTCG
Sbjct: 98  SPRGSRPSWGPTDPRRRSRNLGKVIDTLTCG 128



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>POLG_HCVH4 (Q01404) Genome polyprotein [Contains: Core protein p21 (Capsid|
           protein C) (p21); Core protein p19; Envelope
           glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2
           (NS1) (gp68) (gp70)] (Fragment)
          Length = 519

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 15/31 (48%), Positives = 16/31 (51%), Gaps = 8/31 (25%)
 Frame = -1

Query: 204 SPGRRGPTWCSTSPRRRSR--------LTCG 136
           SP    P+W  T PRRRSR        LTCG
Sbjct: 98  SPRGSRPSWGPTDPRRRSRNLGKVIDTLTCG 128



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>KCNH4_HUMAN (Q9UQ05) Potassium voltage-gated channel subfamily H member 4|
           (Voltage-gated potassium channel subunit Kv12.3)
           (Ether-a-go-go-like potassium channel 1) (ELK channel 1)
           (ELK1) (Brain-specific eag-like channel 2) (BEC2)
          Length = 1017

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 14/24 (58%), Positives = 14/24 (58%)
 Frame = -1

Query: 204 SPGRRGPTWCSTSPRRRSRLTCGR 133
           S GRRG TW   S RRRSR    R
Sbjct: 155 SLGRRGATWKFRSARRRSRTVLHR 178



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>POLG_HCVJT (Q00269) Genome polyprotein [Contains: Core protein p21 (Capsid|
           protein C) (p21); Core protein p19; Envelope
           glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2
           (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-)
           (p23); Serine protease/N
          Length = 3009

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 15/31 (48%), Positives = 16/31 (51%), Gaps = 8/31 (25%)
 Frame = -1

Query: 204 SPGRRGPTWCSTSPRRRSR--------LTCG 136
           SP    P+W  T PRRRSR        LTCG
Sbjct: 98  SPRGSRPSWGPTDPRRRSRNLGKVIDTLTCG 128



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>POLG_HCVJA (P26662) Genome polyprotein [Contains: Core protein p21 (Capsid|
           protein C) (p21); Core protein p19; Envelope
           glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2
           (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-)
           (p23); Serine protease/N
          Length = 3009

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 15/31 (48%), Positives = 16/31 (51%), Gaps = 8/31 (25%)
 Frame = -1

Query: 204 SPGRRGPTWCSTSPRRRSR--------LTCG 136
           SP    P+W  T PRRRSR        LTCG
Sbjct: 98  SPRGSRPSWGPTDPRRRSRNLGKVIDTLTCG 128



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>POLG_HCVCO (Q9WMX2) Genome polyprotein [Contains: Core protein p21 (Capsid|
           protein C) (p21); Core protein p19; Envelope
           glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2
           (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-)
           (p23); Serine protease/N
          Length = 3009

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 15/31 (48%), Positives = 16/31 (51%), Gaps = 8/31 (25%)
 Frame = -1

Query: 204 SPGRRGPTWCSTSPRRRSR--------LTCG 136
           SP    P+W  T PRRRSR        LTCG
Sbjct: 98  SPRGSRPSWGPTDPRRRSRNLGKVIDTLTCG 128



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>POLG_HCVBK (P26663) Genome polyprotein [Contains: Core protein p21 (Capsid|
           protein C) (p21); Core protein p19; Envelope
           glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2
           (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-)
           (p23); Serine protease/N
          Length = 3009

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 15/31 (48%), Positives = 16/31 (51%), Gaps = 8/31 (25%)
 Frame = -1

Query: 204 SPGRRGPTWCSTSPRRRSR--------LTCG 136
           SP    P+W  T PRRRSR        LTCG
Sbjct: 98  SPRGSRPSWGPTDPRRRSRNLGKVIDTLTCG 128


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,411,925
Number of Sequences: 219361
Number of extensions: 599938
Number of successful extensions: 2192
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2191
length of database: 80,573,946
effective HSP length: 56
effective length of database: 68,289,730
effective search space used: 1638953520
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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