ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl53c01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 121 1e-24
2dbj|AP003726.3| Oryza sativa (japonica cultivar-group) genomic D... 121 1e-24
3dbj|AK065611.1| Oryza sativa (japonica cultivar-group) cDNA clon... 121 1e-24
4emb|BX511157.10| Zebrafish DNA sequence from clone DKEY-197M14 i... 42 0.79
5ref|XM_675903.1| Aspergillus nidulans FGSC A4 hypothetical prote... 40 3.1
6dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 3.1

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  121 bits (61), Expect = 1e-24
 Identities = 79/85 (92%)
 Strand = Plus / Plus

                                                                            
Query: 157      ccggcggggcgaggttgagcaccatgtcgggccccttctccccggcgacggaaaactcgt 216
                ||||||| ||||||||||||||||||||||| ||||| || ||||||||||| |||||||
Sbjct: 29000693 ccggcggcgcgaggttgagcaccatgtcggggcccttgtcgccggcgacggagaactcgt 29000752

                                         
Query: 217      cgggcaccggcacgcccagttcctc 241
                ||||||||||||||||||| |||||
Sbjct: 29000753 cgggcaccggcacgcccagctcctc 29000777



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>dbj|AP003726.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0596H10
          Length = 166570

 Score =  121 bits (61), Expect = 1e-24
 Identities = 79/85 (92%)
 Strand = Plus / Plus

                                                                         
Query: 157   ccggcggggcgaggttgagcaccatgtcgggccccttctccccggcgacggaaaactcgt 216
             ||||||| ||||||||||||||||||||||| ||||| || ||||||||||| |||||||
Sbjct: 15680 ccggcggcgcgaggttgagcaccatgtcggggcccttgtcgccggcgacggagaactcgt 15739

                                      
Query: 217   cgggcaccggcacgcccagttcctc 241
             ||||||||||||||||||| |||||
Sbjct: 15740 cgggcaccggcacgcccagctcctc 15764



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>dbj|AK065611.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013029I23, full
            insert sequence
          Length = 2957

 Score =  121 bits (61), Expect = 1e-24
 Identities = 79/85 (92%)
 Strand = Plus / Minus

                                                                        
Query: 157  ccggcggggcgaggttgagcaccatgtcgggccccttctccccggcgacggaaaactcgt 216
            ||||||| ||||||||||||||||||||||| ||||| || ||||||||||| |||||||
Sbjct: 2650 ccggcggcgcgaggttgagcaccatgtcggggcccttgtcgccggcgacggagaactcgt 2591

                                     
Query: 217  cgggcaccggcacgcccagttcctc 241
            ||||||||||||||||||| |||||
Sbjct: 2590 cgggcaccggcacgcccagctcctc 2566



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>emb|BX511157.10| Zebrafish DNA sequence from clone DKEY-197M14 in linkage group 5,
             complete sequence
          Length = 159528

 Score = 42.1 bits (21), Expect = 0.79
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 40    tgaagttttacagtgtaaaaa 60
             |||||||||||||||||||||
Sbjct: 11082 tgaagttttacagtgtaaaaa 11062



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>ref|XM_675903.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN7726.2), mRNA
          Length = 3714

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 115  tgccgtgcctttcaaattcc 134
            ||||||||||||||||||||
Sbjct: 2280 tgccgtgcctttcaaattcc 2299



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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 214     cgtcgggcaccggcacgccc 233
               ||||||||||||||||||||
Sbjct: 2756643 cgtcgggcaccggcacgccc 2756662


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,834,881
Number of Sequences: 3902068
Number of extensions: 1834881
Number of successful extensions: 32386
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 32302
Number of HSP's gapped (non-prelim): 84
length of query: 243
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 221
effective length of database: 17,147,199,772
effective search space: 3789531149612
effective search space used: 3789531149612
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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