ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl53b12 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone Pseudo10p0.0-10p4.4, complete sequence Length = 2331000 Score = 123 bits (62), Expect = 2e-25 Identities = 142/162 (87%), Gaps = 5/162 (3%) Strand = Plus / Plus Query: 19 cttttctagatgtggactttgtacacagagggagcttatgtcatatgttacagaagccct 78 |||||||||||| ||| |||||| |||||||||||||||||||||||||||| ||||||| Sbjct: 1172371 cttttctagatgcggattttgtatacagagggagcttatgtcatatgttacaaaagccct 1172430 Query: 79 gcctatgttagcaacactgattctacaggggcatatcaagcaacgcatgtttgcagctag 138 |||||||||||| | ||| || ||||| || |||||||||| | | ||||| || || || Sbjct: 1172431 gcctatgttagc-atactaatcctaca-ggacatatcaagc-atgaatgttcgctgc-ag 1172486 Query: 139 cagcaatcttgc-ggtaaagcttgaaacctaacctgctctag 179 |||||||||||| |||||||||||||||||||||||||| Sbjct: 1172487 cagcaatcttgcaacaaaagcttgaaacctaacctgctctag 1172528
>gb|AC079179.5| Oryza sativa chromosome 10 clone OSJNBa0079B05, complete sequence Length = 145526 Score = 123 bits (62), Expect = 2e-25 Identities = 142/162 (87%), Gaps = 5/162 (3%) Strand = Plus / Plus Query: 19 cttttctagatgtggactttgtacacagagggagcttatgtcatatgttacagaagccct 78 |||||||||||| ||| |||||| |||||||||||||||||||||||||||| ||||||| Sbjct: 56609 cttttctagatgcggattttgtatacagagggagcttatgtcatatgttacaaaagccct 56668 Query: 79 gcctatgttagcaacactgattctacaggggcatatcaagcaacgcatgtttgcagctag 138 |||||||||||| | ||| || ||||| || |||||||||| | | ||||| || || || Sbjct: 56669 gcctatgttagc-atactaatcctaca-ggacatatcaagc-atgaatgttcgctgc-ag 56724 Query: 139 cagcaatcttgc-ggtaaagcttgaaacctaacctgctctag 179 |||||||||||| |||||||||||||||||||||||||| Sbjct: 56725 cagcaatcttgcaacaaaagcttgaaacctaacctgctctag 56766
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 123 bits (62), Expect = 2e-25 Identities = 142/162 (87%), Gaps = 5/162 (3%) Strand = Plus / Plus Query: 19 cttttctagatgtggactttgtacacagagggagcttatgtcatatgttacagaagccct 78 |||||||||||| ||| |||||| |||||||||||||||||||||||||||| ||||||| Sbjct: 1172371 cttttctagatgcggattttgtatacagagggagcttatgtcatatgttacaaaagccct 1172430 Query: 79 gcctatgttagcaacactgattctacaggggcatatcaagcaacgcatgtttgcagctag 138 |||||||||||| | ||| || ||||| || |||||||||| | | ||||| || || || Sbjct: 1172431 gcctatgttagc-atactaatcctaca-ggacatatcaagc-atgaatgttcgctgc-ag 1172486 Query: 139 cagcaatcttgc-ggtaaagcttgaaacctaacctgctctag 179 |||||||||||| |||||||||||||||||||||||||| Sbjct: 1172487 cagcaatcttgcaacaaaagcttgaaacctaacctgctctag 1172528
>dbj|AK058386.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-014-H12, full insert sequence Length = 1226 Score = 123 bits (62), Expect = 2e-25 Identities = 142/162 (87%), Gaps = 5/162 (3%) Strand = Plus / Minus Query: 19 cttttctagatgtggactttgtacacagagggagcttatgtcatatgttacagaagccct 78 |||||||||||| ||| |||||| |||||||||||||||||||||||||||| ||||||| Sbjct: 1211 cttttctagatgcggattttgtatacagagggagcttatgtcatatgttacaaaagccct 1152 Query: 79 gcctatgttagcaacactgattctacaggggcatatcaagcaacgcatgtttgcagctag 138 |||||||||||| | ||| || ||||| || |||||||||| | | ||||| || || || Sbjct: 1151 gcctatgttagc-atactaatcctaca-ggacatatcaagc-atgaatgttcgctgc-ag 1096 Query: 139 cagcaatcttgc-ggtaaagcttgaaacctaacctgctctag 179 |||||||||||| |||||||||||||||||||||||||| Sbjct: 1095 cagcaatcttgcaacaaaagcttgaaacctaacctgctctag 1054
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 123 bits (62), Expect = 2e-25 Identities = 142/162 (87%), Gaps = 5/162 (3%) Strand = Plus / Plus Query: 19 cttttctagatgtggactttgtacacagagggagcttatgtcatatgttacagaagccct 78 |||||||||||| ||| |||||| |||||||||||||||||||||||||||| ||||||| Sbjct: 1172368 cttttctagatgcggattttgtatacagagggagcttatgtcatatgttacaaaagccct 1172427 Query: 79 gcctatgttagcaacactgattctacaggggcatatcaagcaacgcatgtttgcagctag 138 |||||||||||| | ||| || ||||| || |||||||||| | | ||||| || || || Sbjct: 1172428 gcctatgttagc-atactaatcctaca-ggacatatcaagc-atgaatgttcgctgc-ag 1172483 Query: 139 cagcaatcttgc-ggtaaagcttgaaacctaacctgctctag 179 |||||||||||| |||||||||||||||||||||||||| Sbjct: 1172484 cagcaatcttgcaacaaaagcttgaaacctaacctgctctag 1172525
>dbj|AK070076.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023044N24, full insert sequence Length = 1098 Score = 113 bits (57), Expect = 2e-22 Identities = 69/73 (94%) Strand = Plus / Minus Query: 19 cttttctagatgtggactttgtacacagagggagcttatgtcatatgttacagaagccct 78 |||||||||||| ||| |||||| |||||||||||||||||||||||||||| ||||||| Sbjct: 1083 cttttctagatgcggattttgtatacagagggagcttatgtcatatgttacaaaagccct 1024 Query: 79 gcctatgttagca 91 ||||||||||||| Sbjct: 1023 gcctatgttagca 1011 Score = 52.0 bits (26), Expect = 6e-04 Identities = 26/26 (100%) Strand = Plus / Minus Query: 154 aaagcttgaaacctaacctgctctag 179 |||||||||||||||||||||||||| Sbjct: 953 aaagcttgaaacctaacctgctctag 928
>gb|AY108231.1| Zea mays PCO101616 mRNA sequence Length = 656 Score = 75.8 bits (38), Expect = 4e-11 Identities = 50/54 (92%) Strand = Plus / Minus Query: 38 tgtacacagagggagcttatgtcatatgttacagaagccctgcctatgttagca 91 |||| ||||| ||| ||||||||||||| ||||||||||||||||||||||||| Sbjct: 602 tgtatacagaaggaacttatgtcatatggtacagaagccctgcctatgttagca 549
>emb|AL139110.17| Human DNA sequence from clone RP11-446J19 on chromosome Xq13.1-13.3 Contains a cytochrome c, somatic (CYCS) pseudogene, complete sequence Length = 123530 Score = 42.1 bits (21), Expect = 0.57 Identities = 21/21 (100%) Strand = Plus / Plus Query: 5 gaaaaaatgattttcttttct 25 ||||||||||||||||||||| Sbjct: 31546 gaaaaaatgattttcttttct 31566
>gb|AC011497.6| Homo sapiens chromosome 19 clone CTB-50E14, complete sequence Length = 168586 Score = 42.1 bits (21), Expect = 0.57 Identities = 21/21 (100%) Strand = Plus / Minus Query: 34 actttgtacacagagggagct 54 ||||||||||||||||||||| Sbjct: 1378 actttgtacacagagggagct 1358
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 42.1 bits (21), Expect = 0.57 Identities = 21/21 (100%) Strand = Plus / Plus Query: 14 attttcttttctagatgtgga 34 ||||||||||||||||||||| Sbjct: 3287006 attttcttttctagatgtgga 3287026
>gb|AC159270.2| Mus musculus BAC clone RP23-450E17 from chromosome 12, complete sequence Length = 174186 Score = 42.1 bits (21), Expect = 0.57 Identities = 21/21 (100%) Strand = Plus / Minus Query: 6 aaaaaatgattttcttttcta 26 ||||||||||||||||||||| Sbjct: 117110 aaaaaatgattttcttttcta 117090
>dbj|AP003847.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1714_H10 Length = 191580 Score = 42.1 bits (21), Expect = 0.57 Identities = 21/21 (100%) Strand = Plus / Plus Query: 14 attttcttttctagatgtgga 34 ||||||||||||||||||||| Sbjct: 96699 attttcttttctagatgtgga 96719
>gb|AC005972.1|AC005972 Homo sapiens chromosome 17, clone hRPK.180_P_8, complete sequence Length = 183451 Score = 42.1 bits (21), Expect = 0.57 Identities = 21/21 (100%) Strand = Plus / Minus Query: 55 tatgtcatatgttacagaagc 75 ||||||||||||||||||||| Sbjct: 161295 tatgtcatatgttacagaagc 161275
>gb|AC004785.1|AC004785 Homo sapiens chromosome 19, cosmid R26908, complete sequence Length = 39823 Score = 42.1 bits (21), Expect = 0.57 Identities = 21/21 (100%) Strand = Plus / Plus Query: 34 actttgtacacagagggagct 54 ||||||||||||||||||||| Sbjct: 4400 actttgtacacagagggagct 4420
>gb|AC146092.2| Pan troglodytes BAC clone RP43-48I3 from 7, complete sequence Length = 174070 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 10 aatgattttcttttctagat 29 |||||||||||||||||||| Sbjct: 34316 aatgattttcttttctagat 34335
>gb|AC152064.3| Pan troglodytes BAC clone RP43-134I6 from chromosome 7, complete sequence Length = 179272 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 10 aatgattttcttttctagat 29 |||||||||||||||||||| Sbjct: 131757 aatgattttcttttctagat 131738
>ref|XM_737352.1| Plasmodium chabaudi chabaudi hypothetical protein (PC000784.00.0) partial mRNA Length = 2427 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 aaaaaatgattttcttttct 25 |||||||||||||||||||| Sbjct: 2273 aaaaaatgattttcttttct 2254
>ref|XM_729944.1| Plasmodium chabaudi chabaudi hypothetical protein (PC301079.00.0) partial mRNA Length = 690 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 aaaaaatgattttcttttct 25 |||||||||||||||||||| Sbjct: 533 aaaaaatgattttcttttct 514
>emb|AL691515.9| Human DNA sequence from clone RP11-316I3 on chromosome 1 Contains two novel genes, complete sequence Length = 199421 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 aaaaatgattttcttttcta 26 |||||||||||||||||||| Sbjct: 24213 aaaaatgattttcttttcta 24232
>gb|AF491780.1| Homo sapiens neuregulin 1 (NRG1) gene, partial cds, alternatively spliced Length = 1285452 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 6 aaaaaatgattttcttttct 25 |||||||||||||||||||| Sbjct: 456090 aaaaaatgattttcttttct 456109
>emb|AL596256.14| Mouse DNA sequence from clone RP23-259D24 on chromosome 11, complete sequence Length = 169405 Score = 40.1 bits (20), Expect = 2.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 6 aaaaaatgattttcttttctagat 29 ||||||||||||||||||| |||| Sbjct: 67038 aaaaaatgattttcttttcaagat 67015
>emb|AL691481.15| Mouse DNA sequence from clone RP23-173C3 on chromosome 4 Contains a non-neuron enolase 1 alpha (Eno1) pseudogene, a mitochondrial H+ transporting ATP synthase F0 complex subunit d (Atp5h) pseudogene and a CpG island, complete sequence Length = 230127 Score = 40.1 bits (20), Expect = 2.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 1 gaaggaaaaaatgattttcttttc 24 |||| ||||||||||||||||||| Sbjct: 217293 gaagaaaaaaatgattttcttttc 217316
>gb|AC068931.6| Homo sapiens chromosome 8, clone RP11-650B11, complete sequence Length = 101474 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 aaaaaatgattttcttttct 25 |||||||||||||||||||| Sbjct: 1238 aaaaaatgattttcttttct 1219
>gb|AC087638.7| Homo sapiens chromosome 15, clone RP11-655F8, complete sequence Length = 173062 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 gaaggaaaaaatgattttct 20 |||||||||||||||||||| Sbjct: 52968 gaaggaaaaaatgattttct 52987
>gb|AC022833.5| Homo sapiens chromosome , clone RP11-147C21, complete sequence Length = 177019 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 aaaaaatgattttcttttct 25 |||||||||||||||||||| Sbjct: 165080 aaaaaatgattttcttttct 165061
>gb|AC148343.2| Medicago truncatula chromosome 7 BAC clone mth2-70c24, complete sequence Length = 87311 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 aaaaaatgattttcttttct 25 |||||||||||||||||||| Sbjct: 66524 aaaaaatgattttcttttct 66505
>gb|AC093107.3| Homo sapiens chromosome 7 clone RP11-751K21, complete sequence Length = 197837 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 10 aatgattttcttttctagat 29 |||||||||||||||||||| Sbjct: 33283 aatgattttcttttctagat 33302
>tpg|BK000383.1| TPA: TPA_exp: Homo sapiens neuregulin 1 isoform (NRG1) gene, alternatively spliced, complete cds Length = 1421559 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 6 aaaaaatgattttcttttct 25 |||||||||||||||||||| Sbjct: 456090 aaaaaatgattttcttttct 456109
>gb|DP000030.1| Sus scrofa target 116 genomic scaffold Length = 380805 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 6 aaaaaatgattttcttttct 25 |||||||||||||||||||| Sbjct: 301235 aaaaaatgattttcttttct 301254
>gb|AC117728.10| Mus musculus chromosome 6, clone RP24-126C21, complete sequence Length = 180605 Score = 40.1 bits (20), Expect = 2.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 2 aaggaaaaaatgattttcttttctagat 29 |||||||||||||||||| ||| ||||| Sbjct: 136610 aaggaaaaaatgattttcatttatagat 136583
>gb|AC164549.4| Mus musculus BAC clone RP24-273K1 from chromosome 16, complete sequence Length = 182658 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 17 ttcttttctagatgtggac 35 ||||||||||||||||||| Sbjct: 8072 ttcttttctagatgtggac 8054
>gb|AC167173.4| Mus musculus BAC clone RP23-30D21 from chromosome 3, complete sequence Length = 203513 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 11 atgattttcttttctagat 29 ||||||||||||||||||| Sbjct: 2456 atgattttcttttctagat 2438
>gb|AC169813.2| Rhesus Macaque BAC CH250-16M3 (Children's Hospital Oakland Research Institute Rhesus macaque Adult Male BAC Library) complete sequence Length = 168861 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 6 aaaaaatgattttcttttc 24 ||||||||||||||||||| Sbjct: 26094 aaaaaatgattttcttttc 26112
>gb|AY360387.2| Oryza sativa (japonica cultivar-group) chromosome 8 BAC OSJNBa0003M24, complete sequence Length = 150085 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 9 aaatgattttcttttctag 27 ||||||||||||||||||| Sbjct: 134301 aaatgattttcttttctag 134283
>gb|AY139959.1| Haplophallus sp. KY-2002 16S ribosomal RNA gene, partial sequence; mitochondrial Length = 478 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 5 gaaaaaatgattttctttt 23 ||||||||||||||||||| Sbjct: 115 gaaaaaatgattttctttt 133
>gb|AF094574.1| Haemophilus influenzae type b trigger factor (tig) gene, partial cds; hemoglobin/hemoglobin-haptoglobin binding protein (hgpC) and negative regulator of translation (relB) genes, complete cds; translation factor (selB) gene, partial cds; and unknown gene Length = 5489 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 7 aaaaatgattttcttttct 25 ||||||||||||||||||| Sbjct: 1080 aaaaatgattttcttttct 1098
>gb|AF322191.1| Anopheles darlingi clone ADC137 microsatellite sequence Length = 665 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 15 ttttcttttctagatgtgg 33 ||||||||||||||||||| Sbjct: 62 ttttcttttctagatgtgg 44
>gb|AC146526.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0027D12 map near 50283S, complete sequence Length = 128988 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 9 aaatgattttcttttctag 27 ||||||||||||||||||| Sbjct: 93616 aaatgattttcttttctag 93634
>gb|AC146946.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0037B06 map near 50283S, complete sequence Length = 149398 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 9 aaatgattttcttttctag 27 ||||||||||||||||||| Sbjct: 140513 aaatgattttcttttctag 140495
>gb|AC139231.11| Mus musculus chromosome 1, clone RP24-87I22, complete sequence Length = 191438 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 28 atgtggactttgtacacag 46 ||||||||||||||||||| Sbjct: 15272 atgtggactttgtacacag 15290
>gb|AC150413.2| Branchiostoma floridae clone CH302-61A17, complete sequence Length = 240260 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 127 gtttgcagctagcagcaat 145 ||||||||||||||||||| Sbjct: 2119 gtttgcagctagcagcaat 2137
>ref|XR_003859.1| PREDICTED: Mus musculus similar to transcription termination factor 1 (LOC383754), mRNA Length = 1767 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 98 attctacaggggcatatca 116 ||||||||||||||||||| Sbjct: 1258 attctacaggggcatatca 1276
>ref|XR_005080.1| PREDICTED: Mus musculus similar to transcription termination factor 1 (LOC383754), mRNA Length = 1767 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 98 attctacaggggcatatca 116 ||||||||||||||||||| Sbjct: 1258 attctacaggggcatatca 1276
>gb|AC132292.3| Mus musculus BAC clone RP24-319L4 from chromosome 5, complete sequence Length = 160517 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 29 tgtggactttgtacacaga 47 ||||||||||||||||||| Sbjct: 19984 tgtggactttgtacacaga 20002
>gb|AC084054.12| Mus Musculus Strain C57BL6/J chromosome 5 BAC, RP23-137N6, complete sequence Length = 231589 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 7 aaaaatgattttcttttct 25 ||||||||||||||||||| Sbjct: 189761 aaaaatgattttcttttct 189779
>gb|AC121155.2| Homo sapiens BAC clone RP11-469P13 from 4, complete sequence Length = 92400 Score = 38.2 bits (19), Expect = 8.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 4 ggaaaaaatgattttcttttcta 26 ||||||||||||||||| ||||| Sbjct: 11712 ggaaaaaatgattttctattcta 11690
>gb|AC126457.3| Mus musculus BAC clone RP23-68E6 from 16, complete sequence Length = 147585 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 17 ttcttttctagatgtggac 35 ||||||||||||||||||| Sbjct: 80583 ttcttttctagatgtggac 80565
>gb|AC139292.4| Mus musculus BAC clone RP24-279K6 from chromosome 3, complete sequence Length = 165051 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 11 atgattttcttttctagat 29 ||||||||||||||||||| Sbjct: 105939 atgattttcttttctagat 105957
>emb|AL360001.33| Human DNA sequence from clone RP11-332O19 on chromosome 10 Contains the 5' end of the NT5C2 gene for cytosolic 5'-nucleotidase II, a ribosomal protrein S15A (RPS15A) pseudogene, a MARCKS-like protein (MLP) pseudogene, a suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) (ST13) pseudogene, a ribulose-5-phosphate-3-epimerase (RPE) pseudogene and two CpG islands, complete sequence Length = 142893 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 10 aatgattttcttttctaga 28 ||||||||||||||||||| Sbjct: 67822 aatgattttcttttctaga 67804
>emb|Z97344.2|ATFCA9 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 9 Length = 81835 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 9 aaatgattttcttttctag 27 ||||||||||||||||||| Sbjct: 79612 aaatgattttcttttctag 79630
>emb|AL161547.2|ATCHRIV47 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 47 Length = 198067 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 9 aaatgattttcttttctag 27 ||||||||||||||||||| Sbjct: 74624 aaatgattttcttttctag 74642
>gb|AC161369.3| Mus musculus BAC clone RP23-426C11 from chromosome 3, complete sequence Length = 202655 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 11 atgattttcttttctagat 29 ||||||||||||||||||| Sbjct: 135177 atgattttcttttctagat 135159
>gb|AC112717.5| Homo sapiens BAC clone RP11-481H16 from 4, complete sequence Length = 189406 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 7 aaaaatgattttcttttct 25 ||||||||||||||||||| Sbjct: 38055 aaaaatgattttcttttct 38037
>gb|AC021649.18| Homo sapiens 3 BAC RP11-321F19 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 209521 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 76 cctgcctatgttagcaaca 94 ||||||||||||||||||| Sbjct: 132432 cctgcctatgttagcaaca 132450
>gb|AC090166.5| Homo sapiens chromosome 17, clone RP11-750P21, complete sequence Length = 42772 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 3 aggaaaaaatgattttctt 21 ||||||||||||||||||| Sbjct: 7560 aggaaaaaatgattttctt 7542
>gb|AC012322.8| Homo sapiens chromosome 16 clone RP11-562N11, complete sequence Length = 186151 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 29 tgtggactttgtacacaga 47 ||||||||||||||||||| Sbjct: 120406 tgtggactttgtacacaga 120424
>gb|AC008683.7| Homo sapiens chromosome 5 clone CTB-58D19, complete sequence Length = 114127 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 2 aaggaaaaaatgattttct 20 ||||||||||||||||||| Sbjct: 35340 aaggaaaaaatgattttct 35322
>gb|AC107928.3| Homo sapiens chromosome 11, clone RP11-412L22, complete sequence Length = 160764 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 8 aaaatgattttcttttcta 26 ||||||||||||||||||| Sbjct: 51052 aaaatgattttcttttcta 51070
>gb|AC099054.2| Homo sapiens chromosome 3 clone RP11-489C3, complete sequence Length = 201564 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 6 aaaaaatgattttcttttc 24 ||||||||||||||||||| Sbjct: 157760 aaaaaatgattttcttttc 157742
>dbj|AP007170.1| Aspergillus oryzae RIB40 genomic DNA, SC138 Length = 504369 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 134 gctagcagcaatcttgcgg 152 ||||||||||||||||||| Sbjct: 246908 gctagcagcaatcttgcgg 246890
>gb|AC093853.3| Homo sapiens BAC clone RP11-502M1 from 4, complete sequence Length = 212207 Score = 38.2 bits (19), Expect = 8.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 4 ggaaaaaatgattttcttttcta 26 ||||||||||||||||| ||||| Sbjct: 7769 ggaaaaaatgattttctattcta 7747
>gb|AC095066.4| Homo sapiens BAC clone RP11-651B17 from 4, complete sequence Length = 97734 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 5 gaaaaaatgattttctttt 23 ||||||||||||||||||| Sbjct: 24637 gaaaaaatgattttctttt 24619
>gb|AC093834.3| Homo sapiens BAC clone RP11-423L1 from 4, complete sequence Length = 177582 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 7 aaaaatgattttcttttct 25 ||||||||||||||||||| Sbjct: 31227 aaaaatgattttcttttct 31209
>gb|AC160832.2| Xenopus tropicalis BAC clone ISB11-49O4 containing goosecoid gene, complete cds, complete sequence Length = 61075 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 6 aaaaaatgattttcttttc 24 ||||||||||||||||||| Sbjct: 24906 aaaaaatgattttcttttc 24924
>gb|AC091154.3| Homo sapiens chromosome 17, clone RP11-750B16, complete sequence Length = 175783 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 3 aggaaaaaatgattttctt 21 ||||||||||||||||||| Sbjct: 20008 aggaaaaaatgattttctt 20026
>gb|AC009522.11| Homo sapiens 12 BAC RP11-591N1 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 128666 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 8 aaaatgattttcttttcta 26 ||||||||||||||||||| Sbjct: 89281 aaaatgattttcttttcta 89299
>gb|AC009109.9| Homo sapiens chromosome 16 clone RP11-467L24, complete sequence Length = 150086 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 29 tgtggactttgtacacaga 47 ||||||||||||||||||| Sbjct: 40389 tgtggactttgtacacaga 40407
>gb|AC067871.6|AC067871 Homo sapiens chromosome 8, clone CTD-2026F11, complete sequence Length = 181118 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 5 gaaaaaatgattttctttt 23 ||||||||||||||||||| Sbjct: 19690 gaaaaaatgattttctttt 19708
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 9 aaatgattttcttttctag 27 ||||||||||||||||||| Sbjct: 14594203 aaatgattttcttttctag 14594221
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 1 gaaggaaaaaatgattttc 19 ||||||||||||||||||| Sbjct: 19988309 gaaggaaaaaatgattttc 19988291
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 9 aaatgattttcttttctag 27 ||||||||||||||||||| Sbjct: 13048955 aaatgattttcttttctag 13048973
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 5 gaaaaaatgattttctttt 23 ||||||||||||||||||| Sbjct: 35025021 gaaaaaatgattttctttt 35025003
>gb|AC154122.7| Mus musculus chromosome 15, clone RP24-62G16, complete sequence Length = 215079 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 12 tgattttcttttctagatg 30 ||||||||||||||||||| Sbjct: 91474 tgattttcttttctagatg 91492
>gb|AC097480.3| Homo sapiens BAC clone RP11-123O22 from 4, complete sequence Length = 168994 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 5 gaaaaaatgattttctttt 23 ||||||||||||||||||| Sbjct: 79129 gaaaaaatgattttctttt 79147
>gb|AC021086.4|AC021086 Homo sapiens chromosome 5 clone CTD-2001C12, complete sequence Length = 137063 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 160 tgaaacctaacctgctcta 178 ||||||||||||||||||| Sbjct: 93541 tgaaacctaacctgctcta 93523
>gb|AC155173.3| Mus musculus BAC clone RP23-72O23 from chromosome 5, complete sequence Length = 245443 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 29 tgtggactttgtacacaga 47 ||||||||||||||||||| Sbjct: 89562 tgtggactttgtacacaga 89580
>gb|AC107070.4| Homo sapiens BAC clone RP11-293H4 from 2, complete sequence Length = 107972 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 1 gaaggaaaaaatgattttc 19 ||||||||||||||||||| Sbjct: 92755 gaaggaaaaaatgattttc 92737
>gb|AC093927.3| Homo sapiens chromosome 3 clone RP11-81I24, complete sequence Length = 183190 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 6 aaaaaatgattttcttttc 24 ||||||||||||||||||| Sbjct: 73577 aaaaaatgattttcttttc 73559
>gb|AC097721.3| Homo sapiens BAC clone RP11-36O6 from 2, complete sequence Length = 144493 Score = 38.2 bits (19), Expect = 8.9 Identities = 22/23 (95%) Strand = Plus / Plus Query: 2 aaggaaaaaatgattttcttttc 24 ||||||||||||||||| ||||| Sbjct: 27787 aaggaaaaaatgatttttttttc 27809
>dbj|AP003348.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0485B12 Length = 156047 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 5 gaaaaaatgattttctttt 23 ||||||||||||||||||| Sbjct: 32171 gaaaaaatgattttctttt 32153
>dbj|AP003302.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0703B11 Length = 144074 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 5 gaaaaaatgattttctttt 23 ||||||||||||||||||| Sbjct: 69249 gaaaaaatgattttctttt 69231
>gb|AC010382.4|AC010382 Homo sapiens chromosome 5 clone CTD-2068C11, complete sequence Length = 151365 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 160 tgaaacctaacctgctcta 178 ||||||||||||||||||| Sbjct: 127147 tgaaacctaacctgctcta 127129
>dbj|AP006855.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, fosmid clone:OSJNOa178M01 Length = 34955 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 1 gaaggaaaaaatgattttc 19 ||||||||||||||||||| Sbjct: 8332 gaaggaaaaaatgattttc 8314
>dbj|AP006480.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone: B1052H09 Length = 190806 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 9 aaatgattttcttttctag 27 ||||||||||||||||||| Sbjct: 185935 aaatgattttcttttctag 185953
>dbj|AP006481.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone: B1100F03 Length = 139217 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 9 aaatgattttcttttctag 27 ||||||||||||||||||| Sbjct: 29475 aaatgattttcttttctag 29493
>emb|AL954129.11| Zebrafish DNA sequence from clone CH211-200P22 in linkage group 24, complete sequence Length = 161275 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 148 tgcggtaaagcttgaaacc 166 ||||||||||||||||||| Sbjct: 117278 tgcggtaaagcttgaaacc 117260
>gb|AC090977.48| Mus musculus strain C57BL/6J clone rp23-213m14 map 16, complete sequence Length = 208412 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 17 ttcttttctagatgtggac 35 ||||||||||||||||||| Sbjct: 188042 ttcttttctagatgtggac 188024
>gb|AC000364.1|HSAC000364 Human cosmid g1346a186, complete sequence Length = 37060 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 5 gaaaaaatgattttctttt 23 ||||||||||||||||||| Sbjct: 1064 gaaaaaatgattttctttt 1046
>gb|AC000361.1|HSAC000361 Human cosmid g1346a045, complete sequence Length = 40482 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 5 gaaaaaatgattttctttt 23 ||||||||||||||||||| Sbjct: 33330 gaaaaaatgattttctttt 33312
>gb|AC165322.12| Mus musculus chromosome 1, clone RP23-127J15, complete sequence Length = 185278 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 28 atgtggactttgtacacag 46 ||||||||||||||||||| Sbjct: 163200 atgtggactttgtacacag 163218
>dbj|AP002515.3| Homo sapiens genomic DNA, chromosome 11q, clone:CTD-3159I7, complete sequences Length = 166063 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 7 aaaaatgattttcttttct 25 ||||||||||||||||||| Sbjct: 109479 aaaaatgattttcttttct 109497
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 9 aaatgattttcttttctag 27 ||||||||||||||||||| Sbjct: 14676204 aaatgattttcttttctag 14676222
>emb|AL935314.9| Mouse DNA sequence from clone RP23-367B2 on chromosome 2, complete sequence Length = 36885 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 98 attctacaggggcatatca 116 ||||||||||||||||||| Sbjct: 25917 attctacaggggcatatca 25899
>dbj|AP006627.1| Bacillus clausii KSM-K16 DNA, complete genome Length = 4303871 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 7 aaaaatgattttcttttct 25 ||||||||||||||||||| Sbjct: 1021505 aaaaatgattttcttttct 1021487
>gb|AC169807.2| Rhesus Macaque CHR4 BAC CH250-23P16 (Children's Hospital Oakland Research Institute Rhesus macaque Adult Male BAC Library) complete sequence Length = 172055 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 6 aaaaaatgattttcttttc 24 ||||||||||||||||||| Sbjct: 9322 aaaaaatgattttcttttc 9304
>emb|X58041.1|HSPHIND3A Human polymorphic HindIII site DNA (THRB region) Length = 740 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 6 aaaaaatgattttcttttc 24 ||||||||||||||||||| Sbjct: 427 aaaaaatgattttcttttc 445
>dbj|AB001489.1| Mus musculus DNA for polyimmunoglobulin receptor, complete cds Length = 29392 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 28 atgtggactttgtacacag 46 ||||||||||||||||||| Sbjct: 9712 atgtggactttgtacacag 9694 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,301,091 Number of Sequences: 3902068 Number of extensions: 2301091 Number of successful extensions: 170016 Number of sequences better than 10.0: 97 Number of HSP's better than 10.0 without gapping: 97 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 169266 Number of HSP's gapped (non-prelim): 750 length of query: 182 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 160 effective length of database: 17,147,199,772 effective search space: 2743551963520 effective search space used: 2743551963520 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)
