ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl53b08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_464514.1| Oryza sativa (japonica cultivar-group), mRNA 92 4e-16
2ref|XM_464515.1| Oryza sativa (japonica cultivar-group), mRNA 92 4e-16
3dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 92 4e-16
4dbj|AP004869.3| Oryza sativa (japonica cultivar-group) genomic D... 92 4e-16
5dbj|AK067705.1| Oryza sativa (japonica cultivar-group) cDNA clon... 92 4e-16
6dbj|AK064800.1| Oryza sativa (japonica cultivar-group) cDNA clon... 92 4e-16
7dbj|AK062067.1| Oryza sativa (japonica cultivar-group) cDNA clon... 92 4e-16
8dbj|AK061400.1| Oryza sativa (japonica cultivar-group) cDNA clon... 92 4e-16
9gb|AC020661.8| Homo sapiens chromosome 15 clone RP11-540O11 map ... 42 0.31
10gb|AC025166.7|AC025166 Homo sapiens chromosome 15 clone CTD-2129... 42 0.31
11emb|BX469912.5| Zebrafish DNA sequence from clone CH211-156L18 i... 42 0.31
12emb|BX088719.6| Zebrafish DNA sequence from clone CH211-207H2 in... 42 0.31
13gb|AC122359.5| Mus musculus BAC clone RP23-421B1 from chromosome... 40 1.2
14emb|CR925678.1| Ehrlichia ruminantium str. Welgevonden, complete... 40 1.2
15emb|CR925677.1| Ehrlichia ruminantium str. Gardel, complete genome 40 1.2
16emb|CR767821.1| Ehrlichia ruminantium strain Welgevonden, comple... 40 1.2
17gb|AC164615.3| Mus musculus BAC clone RP23-320N6 from chromosome... 40 1.2
18gb|AC126794.15| Medicago truncatula clone mth2-24j7, complete se... 40 1.2
19dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 1.2
20dbj|AP004381.3| Oryza sativa (japonica cultivar-group) genomic D... 40 1.2
21dbj|AB018117.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 1.2
22gb|AC123939.5| Mus musculus BAC clone RP23-418I14 from 12, compl... 40 1.2
23gb|AE005674.1| Shigella flexneri 2a str. 301, complete genome 38 4.8
24gb|AC009119.10| Homo sapiens chromosome 16 clone RP11-483P21, co... 38 4.8
25gb|AE014075.1| Escherichia coli CFT073, complete genome 38 4.8
26gb|CP000243.1| Escherichia coli UTI89, complete genome 38 4.8
27gb|U00096.2| Escherichia coli K-12 MG1655, complete genome 38 4.8
28emb|AL132793.24|HSDJ324B8 Human DNA sequence from clone RP3-324B... 38 4.8
29emb|X68301.1|ECNUOO E.coli DNA sequence of nuo operon 38 4.8
30gb|AC124608.1| Homo sapiens chromosome 19 clone RP11-620G10, com... 38 4.8
31dbj|AP009048.1| Escherichia coli W3110 DNA, complete genome 38 4.8
32gb|AC010508.8| Homo sapiens chromosome 19 clone LLNLF-185G6, com... 38 4.8
33gb|AC112702.3| Homo sapiens chromosome 19 clone CTB-151G24, comp... 38 4.8
34gb|AC009287.17| Mus musculus strain 129S6/SvEvTac chromosome 10 ... 38 4.8
35gb|AF130359.3|AF130359 Homo sapiens chromosome 21 clone PAC K156... 38 4.8
36gb|AC157947.2| Mus musculus BAC clone RP23-238L21 from chromosom... 38 4.8
37gb|AE014073.1| Shigella flexneri 2a str. 2457T, complete genome 38 4.8
38gb|AC002485.1|AC002485 Human PAC clone CTA-212D3, complete sequence 38 4.8
39emb|AL163213.2|HS21C013 Homo sapiens chromosome 21 segment HS21C013 38 4.8
40gb|AE005174.2| Escherichia coli O157:H7 EDL933, complete genome 38 4.8
41gb|AC087540.34| Mus musculus strain C57BL/6J chromosome 10 clone... 38 4.8
42dbj|BA000007.2| Escherichia coli O157:H7 DNA, complete genome 38 4.8
43gb|CP000034.1| Shigella dysenteriae Sd197, complete genome 38 4.8
44emb|AL512311.3|CNS07EF2 Human chromosome 14 DNA sequence BAC R-3... 38 4.8
45gb|CP000036.1| Shigella boydii Sb227, complete genome 38 4.8
46gb|CP000038.1| Shigella sonnei Ss046, complete genome 38 4.8
47gb|L25055.1|ECONUOD Escherichia coli NADH dehydrogenase (nuoD), ... 38 4.8 
>ref|XM_464514.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2525

 Score = 91.7 bits (46), Expect = 4e-16
 Identities = 67/74 (90%)
 Strand = Plus / Minus

                                                                        
Query: 9    aaacacatacttcatttattcttataaggttgcaaatattacagtcctcaacaacatgcc 68
            |||||||||||| ||||||||| | ||||||||||| ||||||||||||||||| |||||
Sbjct: 2520 aaacacatacttaatttattctgagaaggttgcaaagattacagtcctcaacaatatgcc 2461

                          
Query: 69   ggaaaaatcaggga 82
            || |||| ||||||
Sbjct: 2460 ggtaaaaacaggga 2447
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>ref|XM_464515.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2981

 Score = 91.7 bits (46), Expect = 4e-16
 Identities = 67/74 (90%)
 Strand = Plus / Minus

                                                                        
Query: 9    aaacacatacttcatttattcttataaggttgcaaatattacagtcctcaacaacatgcc 68
            |||||||||||| ||||||||| | ||||||||||| ||||||||||||||||| |||||
Sbjct: 2976 aaacacatacttaatttattctgagaaggttgcaaagattacagtcctcaacaatatgcc 2917

                          
Query: 69   ggaaaaatcaggga 82
            || |||| ||||||
Sbjct: 2916 ggtaaaaacaggga 2903
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 91.7 bits (46), Expect = 4e-16
 Identities = 67/74 (90%)
 Strand = Plus / Plus

                                                                           
Query: 9       aaacacatacttcatttattcttataaggttgcaaatattacagtcctcaacaacatgcc 68
               |||||||||||| ||||||||| | ||||||||||| ||||||||||||||||| |||||
Sbjct: 5628127 aaacacatacttaatttattctgagaaggttgcaaagattacagtcctcaacaatatgcc 5628186

                             
Query: 69      ggaaaaatcaggga 82
               || |||| ||||||
Sbjct: 5628187 ggtaaaaacaggga 5628200
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>dbj|AP004869.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0419A09
          Length = 168064

 Score = 91.7 bits (46), Expect = 4e-16
 Identities = 67/74 (90%)
 Strand = Plus / Plus

                                                                         
Query: 9     aaacacatacttcatttattcttataaggttgcaaatattacagtcctcaacaacatgcc 68
             |||||||||||| ||||||||| | ||||||||||| ||||||||||||||||| |||||
Sbjct: 55863 aaacacatacttaatttattctgagaaggttgcaaagattacagtcctcaacaatatgcc 55922

                           
Query: 69    ggaaaaatcaggga 82
             || |||| ||||||
Sbjct: 55923 ggtaaaaacaggga 55936
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>dbj|AK067705.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116M10, full
            insert sequence
          Length = 2525

 Score = 91.7 bits (46), Expect = 4e-16
 Identities = 67/74 (90%)
 Strand = Plus / Minus

                                                                        
Query: 9    aaacacatacttcatttattcttataaggttgcaaatattacagtcctcaacaacatgcc 68
            |||||||||||| ||||||||| | ||||||||||| ||||||||||||||||| |||||
Sbjct: 2520 aaacacatacttaatttattctgagaaggttgcaaagattacagtcctcaacaatatgcc 2461

                          
Query: 69   ggaaaaatcaggga 82
            || |||| ||||||
Sbjct: 2460 ggtaaaaacaggga 2447
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>dbj|AK064800.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000D06, full
            insert sequence
          Length = 2981

 Score = 91.7 bits (46), Expect = 4e-16
 Identities = 67/74 (90%)
 Strand = Plus / Minus

                                                                        
Query: 9    aaacacatacttcatttattcttataaggttgcaaatattacagtcctcaacaacatgcc 68
            |||||||||||| ||||||||| | ||||||||||| ||||||||||||||||| |||||
Sbjct: 2976 aaacacatacttaatttattctgagaaggttgcaaagattacagtcctcaacaatatgcc 2917

                          
Query: 69   ggaaaaatcaggga 82
            || |||| ||||||
Sbjct: 2916 ggtaaaaacaggga 2903
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>dbj|AK062067.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-044-D11, full
            insert sequence
          Length = 1713

 Score = 91.7 bits (46), Expect = 4e-16
 Identities = 67/74 (90%)
 Strand = Plus / Minus

                                                                        
Query: 9    aaacacatacttcatttattcttataaggttgcaaatattacagtcctcaacaacatgcc 68
            |||||||||||| ||||||||| | ||||||||||| ||||||||||||||||| |||||
Sbjct: 1708 aaacacatacttaatttattctgagaaggttgcaaagattacagtcctcaacaatatgcc 1649

                          
Query: 69   ggaaaaatcaggga 82
            || |||| ||||||
Sbjct: 1648 ggtaaaaacaggga 1635
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>dbj|AK061400.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-305-G02, full
           insert sequence
          Length = 998

 Score = 91.7 bits (46), Expect = 4e-16
 Identities = 67/74 (90%)
 Strand = Plus / Minus

                                                                       
Query: 9   aaacacatacttcatttattcttataaggttgcaaatattacagtcctcaacaacatgcc 68
           |||||||||||| ||||||||| | ||||||||||| ||||||||||||||||| |||||
Sbjct: 993 aaacacatacttaatttattctgagaaggttgcaaagattacagtcctcaacaatatgcc 934

                         
Query: 69  ggaaaaatcaggga 82
           || |||| ||||||
Sbjct: 933 ggtaaaaacaggga 920
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>gb|AC020661.8| Homo sapiens chromosome 15 clone RP11-540O11 map 15q15, complete
             sequence
          Length = 191655

 Score = 42.1 bits (21), Expect = 0.31
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 70    gaaaaatcagggaacctgtca 90
             |||||||||||||||||||||
Sbjct: 12592 gaaaaatcagggaacctgtca 12572
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>gb|AC025166.7|AC025166 Homo sapiens chromosome 15 clone CTD-2129N1 map 15q15, complete
             sequence
          Length = 115793

 Score = 42.1 bits (21), Expect = 0.31
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 70    gaaaaatcagggaacctgtca 90
             |||||||||||||||||||||
Sbjct: 85110 gaaaaatcagggaacctgtca 85090
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>emb|BX469912.5| Zebrafish DNA sequence from clone CH211-156L18 in linkage group 11,
              complete sequence
          Length = 175462

 Score = 42.1 bits (21), Expect = 0.31
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 5      aaacaaacacatacttcattt 25
              |||||||||||||||||||||
Sbjct: 141423 aaacaaacacatacttcattt 141443
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>emb|BX088719.6| Zebrafish DNA sequence from clone CH211-207H2 in linkage group 17,
              complete sequence
          Length = 205685

 Score = 42.1 bits (21), Expect = 0.31
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 19     ttcatttattcttataaggttgcaa 43
              ||||||||||||||||| |||||||
Sbjct: 153175 ttcatttattcttataatgttgcaa 153151
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>gb|AC122359.5| Mus musculus BAC clone RP23-421B1 from chromosome 6, complete sequence
          Length = 194338

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1     ggcaaaacaaacacatactt 20
             ||||||||||||||||||||
Sbjct: 60654 ggcaaaacaaacacatactt 60673
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>emb|CR925678.1| Ehrlichia ruminantium str. Welgevonden, complete genome
          Length = 1512977

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 5      aaacaaacacatacttcatt 24
              ||||||||||||||||||||
Sbjct: 474672 aaacaaacacatacttcatt 474653
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>emb|CR925677.1| Ehrlichia ruminantium str. Gardel, complete genome
          Length = 1499920

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 5      aaacaaacacatacttcatt 24
              ||||||||||||||||||||
Sbjct: 471926 aaacaaacacatacttcatt 471907
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>emb|CR767821.1| Ehrlichia ruminantium strain Welgevonden, complete genome
          Length = 1516355

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 5      aaacaaacacatacttcatt 24
              ||||||||||||||||||||
Sbjct: 494815 aaacaaacacatacttcatt 494796
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>gb|AC164615.3| Mus musculus BAC clone RP23-320N6 from chromosome 12, complete sequence
          Length = 201524

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 37     gttgcaaatattacagtcct 56
              ||||||||||||||||||||
Sbjct: 118856 gttgcaaatattacagtcct 118837
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>gb|AC126794.15| Medicago truncatula clone mth2-24j7, complete sequence
          Length = 129513

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 4     aaaacaaacacatacttcat 23
             ||||||||||||||||||||
Sbjct: 86243 aaaacaaacacatacttcat 86224
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 44      atattacagtcctcaacaac 63
               ||||||||||||||||||||
Sbjct: 2401512 atattacagtcctcaacaac 2401531
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>dbj|AP004381.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0025F03
          Length = 138042

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 44    atattacagtcctcaacaac 63
             ||||||||||||||||||||
Sbjct: 77482 atattacagtcctcaacaac 77501
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>dbj|AB018117.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MQL5
          Length = 88398

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 9     aaacacatacttcatttatt 28
             ||||||||||||||||||||
Sbjct: 30278 aaacacatacttcatttatt 30259
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>gb|AC123939.5| Mus musculus BAC clone RP23-418I14 from 12, complete sequence
          Length = 188743

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 37    gttgcaaatattacagtcct 56
             ||||||||||||||||||||
Sbjct: 22400 gttgcaaatattacagtcct 22381
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>gb|AE005674.1| Shigella flexneri 2a str. 301, complete genome
          Length = 4607203

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 54      cctcaacaacatgccggaa 72
               |||||||||||||||||||
Sbjct: 2410519 cctcaacaacatgccggaa 2410501
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>gb|AC009119.10| Homo sapiens chromosome 16 clone RP11-483P21, complete sequence
          Length = 181020

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 86     tgtcaagaaaaaacaacca 104
              |||||||||||||||||||
Sbjct: 167495 tgtcaagaaaaaacaacca 167477
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>gb|AE014075.1| Escherichia coli CFT073, complete genome
          Length = 5231428

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 54      cctcaacaacatgccggaa 72
               |||||||||||||||||||
Sbjct: 2684911 cctcaacaacatgccggaa 2684893
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>gb|CP000243.1| Escherichia coli UTI89, complete genome
          Length = 5065741

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 54      cctcaacaacatgccggaa 72
               |||||||||||||||||||
Sbjct: 2534548 cctcaacaacatgccggaa 2534530
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>gb|U00096.2| Escherichia coli K-12 MG1655, complete genome
          Length = 4639675

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 54      cctcaacaacatgccggaa 72
               |||||||||||||||||||
Sbjct: 2400428 cctcaacaacatgccggaa 2400410
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>emb|AL132793.24|HSDJ324B8 Human DNA sequence from clone RP3-324B8 on chromosome 6q12-13, complete
             sequence
          Length = 120535

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 4     aaaacaaacacatacttca 22
             |||||||||||||||||||
Sbjct: 84848 aaaacaaacacatacttca 84830
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>emb|X68301.1|ECNUOO E.coli DNA sequence of nuo operon
          Length = 15865

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 54   cctcaacaacatgccggaa 72
            |||||||||||||||||||
Sbjct: 3035 cctcaacaacatgccggaa 3053
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>gb|AC124608.1| Homo sapiens chromosome 19 clone RP11-620G10, complete sequence
          Length = 176761

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 83     acctgtcaagaaaaaacaa 101
              |||||||||||||||||||
Sbjct: 165009 acctgtcaagaaaaaacaa 165027
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>dbj|AP009048.1| Escherichia coli W3110 DNA, complete genome
          Length = 4646332

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 54      cctcaacaacatgccggaa 72
               |||||||||||||||||||
Sbjct: 2407076 cctcaacaacatgccggaa 2407058
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>gb|AC010508.8| Homo sapiens chromosome 19 clone LLNLF-185G6, complete sequence
          Length = 20540

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 83    acctgtcaagaaaaaacaa 101
             |||||||||||||||||||
Sbjct: 18605 acctgtcaagaaaaaacaa 18587
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>gb|AC112702.3| Homo sapiens chromosome 19 clone CTB-151G24, complete sequence
          Length = 45995

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 83   acctgtcaagaaaaaacaa 101
            |||||||||||||||||||
Sbjct: 6457 acctgtcaagaaaaaacaa 6475
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>gb|AC009287.17| Mus musculus strain 129S6/SvEvTac chromosome 10 clone rp21-668b24,
             complete sequence
          Length = 160785

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 1     ggcaaaacaaacacatact 19
             |||||||||||||||||||
Sbjct: 91949 ggcaaaacaaacacatact 91931
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>gb|AF130359.3|AF130359 Homo sapiens chromosome 21 clone PAC K15697 map 21q21, complete
            sequence
          Length = 146412

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 4    aaaacaaacacatacttca 22
            |||||||||||||||||||
Sbjct: 1426 aaaacaaacacatacttca 1444
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>gb|AC157947.2| Mus musculus BAC clone RP23-238L21 from chromosome 9, complete sequence
          Length = 174016

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 80    ggaacctgtcaagaaaaaa 98
             |||||||||||||||||||
Sbjct: 76945 ggaacctgtcaagaaaaaa 76963
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>gb|AE014073.1| Shigella flexneri 2a str. 2457T, complete genome
          Length = 4599354

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 54      cctcaacaacatgccggaa 72
               |||||||||||||||||||
Sbjct: 2389976 cctcaacaacatgccggaa 2389958
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>gb|AC002485.1|AC002485 Human PAC clone CTA-212D3, complete sequence
          Length = 215609

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 4      aaaacaaacacatacttca 22
              |||||||||||||||||||
Sbjct: 183201 aaaacaaacacatacttca 183219
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>emb|AL163213.2|HS21C013 Homo sapiens chromosome 21 segment HS21C013
          Length = 340000

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 4     aaaacaaacacatacttca 22
             |||||||||||||||||||
Sbjct: 70297 aaaacaaacacatacttca 70315
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>gb|AE005174.2| Escherichia coli O157:H7 EDL933, complete genome
          Length = 5528445

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 54      cctcaacaacatgccggaa 72
               |||||||||||||||||||
Sbjct: 3198532 cctcaacaacatgccggaa 3198514
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>gb|AC087540.34| Mus musculus strain C57BL/6J chromosome 10 clone rp23-136k21, complete
             sequence
          Length = 202121

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 1     ggcaaaacaaacacatact 19
             |||||||||||||||||||
Sbjct: 32228 ggcaaaacaaacacatact 32210
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>dbj|BA000007.2| Escherichia coli O157:H7 DNA, complete genome
          Length = 5498450

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 54      cctcaacaacatgccggaa 72
               |||||||||||||||||||
Sbjct: 3128576 cctcaacaacatgccggaa 3128558
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>gb|CP000034.1| Shigella dysenteriae Sd197, complete genome
          Length = 4369232

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 54      cctcaacaacatgccggaa 72
               |||||||||||||||||||
Sbjct: 2282161 cctcaacaacatgccggaa 2282143
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>emb|AL512311.3|CNS07EF2 Human chromosome 14 DNA sequence BAC R-338B12 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 155326

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 5      aaacaaacacatacttcat 23
              |||||||||||||||||||
Sbjct: 113848 aaacaaacacatacttcat 113866
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>gb|CP000036.1| Shigella boydii Sb227, complete genome
          Length = 4519823

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 54      cctcaacaacatgccggaa 72
               |||||||||||||||||||
Sbjct: 2309224 cctcaacaacatgccggaa 2309206
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>gb|CP000038.1| Shigella sonnei Ss046, complete genome
          Length = 4825265

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 54      cctcaacaacatgccggaa 72
               |||||||||||||||||||
Sbjct: 2473406 cctcaacaacatgccggaa 2473388
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>gb|L25055.1|ECONUOD Escherichia coli NADH dehydrogenase (nuoD), (nuoE), (nuoF), (nuoG)
           gene, complete cds
          Length = 3667

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 54  cctcaacaacatgccggaa 72
           |||||||||||||||||||
Sbjct: 918 cctcaacaacatgccggaa 936


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,736,534
Number of Sequences: 3902068
Number of extensions: 1736534
Number of successful extensions: 120761
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 120299
Number of HSP's gapped (non-prelim): 462
length of query: 107
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 86
effective length of database: 17,151,101,840
effective search space: 1474994758240
effective search space used: 1474994758240
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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