ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl53b06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SUBL_ARATH (O65351) Subtilisin-like protease precursor (EC 3.4.2... 40 0.002
2CUCM1_CUCME (Q39547) Cucumisin precursor (EC 3.4.21.25) (Allerge... 29 2.6
3MOT1_HUMAN (P53985) Monocarboxylate transporter 1 (MCT 1) 28 4.5
4MTSS1_MOUSE (Q8R1S4) Metastasis suppressor protein 1 (Missing in... 28 4.5

>SUBL_ARATH (O65351) Subtilisin-like protease precursor (EC 3.4.21.-)|
           (Cucumisin-like serine protease)
          Length = 757

 Score = 40.0 bits (92), Expect = 0.002
 Identities = 14/22 (63%), Positives = 18/22 (81%)
 Frame = -3

Query: 292 FGRLVWSDGKHTVASPIALTWT 227
           FG + WSDGKH V SP+A++WT
Sbjct: 736 FGSIEWSDGKHVVGSPVAISWT 757



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>CUCM1_CUCME (Q39547) Cucumisin precursor (EC 3.4.21.25) (Allergen Cuc m 1)|
          Length = 731

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 12/17 (70%), Positives = 13/17 (76%)
 Frame = -3

Query: 283 LVWSDGKHTVASPIALT 233
           LVWSDG H V SPI +T
Sbjct: 712 LVWSDGVHYVRSPITIT 728



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>MOT1_HUMAN (P53985) Monocarboxylate transporter 1 (MCT 1)|
          Length = 500

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = +2

Query: 56  MIGPY*HFEIFERYHQISSFSSPESPQFY-TLNPFGRTSSGVSSWRSAWAVLGAPVKSC 229
           MIG Y     ++R    +  +   SP F  TL P  +   G+  WR ++ +LG  + +C
Sbjct: 134 MIGKY----FYKRRPLANGLAMAGSPVFLCTLAPLNQVFFGIFGWRGSFLILGGLLLNC 188



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>MTSS1_MOUSE (Q8R1S4) Metastasis suppressor protein 1 (Missing in metastasis|
           protein)
          Length = 759

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
 Frame = +2

Query: 2   TQSLSIITISPPNHNLKVMIGPY*HFEIFERY-HQISSFSSPESPQFYTLNPFGRTSSGV 178
           +   S  ++S  +H   V  GP+ H     R   +++S   P+   +YT+ P    SS +
Sbjct: 351 SNGFSHCSLSSESHAGPVGAGPFPHCLPASRLLPRVTSVHLPDYAHYYTIGPGMFPSSQI 410

Query: 179 SSWRSAWAVLG 211
            SW+  WA  G
Sbjct: 411 PSWKD-WAKPG 420


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,233,132
Number of Sequences: 219361
Number of extensions: 876419
Number of successful extensions: 2251
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2251
length of database: 80,573,946
effective HSP length: 76
effective length of database: 63,902,510
effective search space used: 1533660240
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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