ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl53b05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GAG_AVISN (P03342) Gag polyprotein [Contains: Core protein p15; ... 30 1.4
2GPC6A_RAT (Q70VB1) G-protein coupled receptor family C group 6 m... 29 3.1
3R1AB_CVBQ (Q8V6W7) Replicase polyprotein 1ab (pp1ab) (ORF1ab pol... 28 4.0
4R1AB_CVBM (Q66198) Replicase polyprotein 1ab (pp1ab) (ORF1ab pol... 28 4.0
5R1AB_CVBLU (Q8V439) Replicase polyprotein 1ab (pp1ab) (ORF1ab po... 28 4.0
6R1AB_CVBEN (Q91A29) Replicase polyprotein 1ab (pp1ab) (ORF1ab po... 28 4.0
7SPE1_BRAJU (O82475) Arginine decarboxylase (EC 4.1.1.19) (ARGDC)... 28 4.0
8COX1_CRION (P98003) Cytochrome c oxidase subunit 1 (EC 1.9.3.1) ... 28 4.0
9FAS2_CANAL (P43098) Fatty acid synthase alpha subunit (EC 2.3.1.... 28 5.3
10TYDP1_HUMAN (Q9NUW8) Tyrosyl-DNA phosphodiesterase 1 (EC 3.1.4.-... 28 5.3
11R1AB_CVMA5 (P16342) Replicase polyprotein 1ab (pp1ab) (ORF1ab po... 28 6.9
12R1AB_CVMJH (P19751) Replicase polyprotein 1ab (pp1ab) (ORF1ab po... 28 6.9
13SFRP5_BOVIN (Q9XSC1) Secreted frizzled-related protein 5 precurs... 28 6.9
14ARI2_HUMAN (O95376) Protein ariadne-2 homolog (ARI-2) (Triad1 pr... 28 6.9
15TMK1_ARATH (P43298) Putative receptor protein kinase TMK1 precur... 28 6.9
16R1AB_CVM2 (Q9PYA3) Replicase polyprotein 1ab (pp1ab) (ORF1ab pol... 28 6.9
17SFRP5_HUMAN (Q5T4F7) Secreted frizzled-related protein 5 precurs... 28 6.9
18FGRL1_CHICK (Q7T2H2) Fibroblast growth factor receptor-like 1 pr... 28 6.9
19LEU2_SYNP6 (Q5MZY3) 3-isopropylmalate dehydratase large subunit ... 27 9.0
20NPT2B_RAT (Q9JJ09) Sodium-dependent phosphate transport protein ... 27 9.0
21GALC_HUMAN (P54803) Galactocerebrosidase precursor (EC 3.2.1.46)... 27 9.0
22NPT2B_MOUSE (Q9DBP0) Sodium-dependent phosphate transport protei... 27 9.0

>GAG_AVISN (P03342) Gag polyprotein [Contains: Core protein p15; Inner coat|
           protein p12; Core shell protein p30] (Fragment)
          Length = 313

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 248 YTWMNQKPASWTHDTKRLIIL*QKTLETKQMPWND 352
           Y W NQ P+S++    ++I L +    T Q  W+D
Sbjct: 226 YNWKNQNPSSFSQAPDQVISLLESVFYTHQPTWDD 260



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>GPC6A_RAT (Q70VB1) G-protein coupled receptor family C group 6 member A|
           precursor
          Length = 928

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = +2

Query: 260 NQKPASWTHDTKRLIIL*QKTLETKQMPWNDGIWLLDNVGIIGS 391
           N   A+WT+DT        KT+ET     ND +W     G+I S
Sbjct: 378 NYSQATWTYDTT-------KTIETHLFKRNDFLWHYTEPGLIHS 414



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>R1AB_CVBQ (Q8V6W7) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)|
            [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)]
            [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like
            proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44);
            3C-like proteinase (
          Length = 7059

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
 Frame = -1

Query: 182  VEYLSILVW--NFVCVWKSSLFPRECTGTGRACCQHCLC----VLLFPVESAVIRHGKWY 21
            + +++++VW  NF+ ++   ++P          C + +C     L FP E +VI H +W 
Sbjct: 3063 IVFVNVIVWCVNFMMLFVFQVYPT-------LSCVYAICYFYATLYFPSEISVIMHLQWL 3115

Query: 20   ICW 12
            + +
Sbjct: 3116 VMY 3118



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>R1AB_CVBM (Q66198) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)|
            [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)]
            [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like
            proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44);
            3C-like proteinase (
          Length = 7094

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
 Frame = -1

Query: 182  VEYLSILVW--NFVCVWKSSLFPRECTGTGRACCQHCLC----VLLFPVESAVIRHGKWY 21
            + +++++VW  NF+ ++   ++P          C + +C     L FP E +VI H +W 
Sbjct: 3063 IVFVNVIVWCVNFMMLFVFQVYPT-------LSCVYAICYFYATLYFPSEISVIMHLQWL 3115

Query: 20   ICW 12
            + +
Sbjct: 3116 VMY 3118



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>R1AB_CVBLU (Q8V439) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)|
            [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)]
            [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like
            proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44);
            3C-like proteinase
          Length = 7094

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
 Frame = -1

Query: 182  VEYLSILVW--NFVCVWKSSLFPRECTGTGRACCQHCLC----VLLFPVESAVIRHGKWY 21
            + +++++VW  NF+ ++   ++P          C + +C     L FP E +VI H +W 
Sbjct: 3063 IVFVNVIVWCVNFMMLFVFQVYPT-------LSCVYAICYFYATLYFPSEISVIMHLQWL 3115

Query: 20   ICW 12
            + +
Sbjct: 3116 VMY 3118



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>R1AB_CVBEN (Q91A29) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)|
            [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)]
            [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like
            proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44);
            3C-like proteinase
          Length = 7094

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
 Frame = -1

Query: 182  VEYLSILVW--NFVCVWKSSLFPRECTGTGRACCQHCLC----VLLFPVESAVIRHGKWY 21
            + +++++VW  NF+ ++   ++P          C + +C     L FP E +VI H +W 
Sbjct: 3063 IVFVNVIVWCVNFMMLFVFQVYPT-------LSCVYAICYFYATLYFPSEISVIMHLQWL 3115

Query: 20   ICW 12
            + +
Sbjct: 3116 VMY 3118



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>SPE1_BRAJU (O82475) Arginine decarboxylase (EC 4.1.1.19) (ARGDC) (ADC)|
          Length = 702

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = -1

Query: 179 EYLSILVWN--FVCVWKSSLFPRECTGTGRACCQHCLCVLLFPVESAVIRH 33
           EY + +V +  FVC  KS   P  C+ +GRA   H   VL+F   SA  RH
Sbjct: 353 EYAAAVVASVRFVCDQKSVKHPVICSESGRAIVSH-HSVLIFEAVSAGKRH 402



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>COX1_CRION (P98003) Cytochrome c oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c|
           oxidase polypeptide I) (Fragment)
          Length = 340

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = -3

Query: 162 GLEFCVRVEEFSFSQRVYWYWSSMLSTLSVCVVIP---GGV 49
           G  FC R + FSF     + W S+++ L + + +P   GGV
Sbjct: 169 GTLFCCRRKFFSFLNWTLFIWGSLITALLLIITLPVLAGGV 209



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>FAS2_CANAL (P43098) Fatty acid synthase alpha subunit (EC 2.3.1.86) [Includes:|
            Acyl carrier; 3-oxoacyl-[acyl-carrier-protein] reductase
            (EC 1.1.1.100) (Beta-ketoacyl reductase);
            3-oxoacyl-[acyl-carrier-protein] synthase (EC 2.3.1.41)
            (Beta-ketoacyl synth
          Length = 1885

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 71   HTDNVDNMLDQYQYTLWEKENSST 142
            + DNVD +L+QY+Y L+   +  T
Sbjct: 1614 NADNVDKLLEQYEYVLYPSRSIQT 1637



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>TYDP1_HUMAN (Q9NUW8) Tyrosyl-DNA phosphodiesterase 1 (EC 3.1.4.-) (Tyr-DNA|
           phosphodiesterase 1)
          Length = 608

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 15/69 (21%), Positives = 33/69 (47%)
 Frame = -1

Query: 299 VSWCHVSMKLVSGSSMCRLMVGWEEEGRQIKSYSRNMNFVEYLSILVWNFVCVWKSSLFP 120
           +S C   + +  G+   ++M+   EEG ++  ++ N+   ++          +W S L+P
Sbjct: 248 ISLCQAKLDIAFGTHHTKMMLLLYEEGLRVVIHTSNLIHADWHQ----KTQGIWLSPLYP 303

Query: 119 RECTGTGRA 93
           R   GT ++
Sbjct: 304 RIADGTHKS 312



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>R1AB_CVMA5 (P16342) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)|
            [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)]
            [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like
            proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44);
            3C-like proteinase
          Length = 7176

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = -1

Query: 182  VEYLSILVW--NFVCVWKSSLFPRECTGTGRACCQHCLCVLLFPVESAVIRHGKWYICW 12
            V  ++++VW  NF+ ++   ++P   T +    C +    L FP E +V+ H +W + +
Sbjct: 3150 VVVINVIVWCINFLMLFVFQVYP---TLSCLYACFYFYTTLYFPSEISVVMHLQWLVMY 3205



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>R1AB_CVMJH (P19751) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)|
            [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)]
            [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like
            proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44);
            3C-like proteinase
          Length = 7180

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = -1

Query: 182  VEYLSILVW--NFVCVWKSSLFPRECTGTGRACCQHCLCVLLFPVESAVIRHGKWYICW 12
            V  ++++VW  NF+ ++   ++P   T +    C +    L FP E +V+ H +W + +
Sbjct: 3153 VVVINVIVWCINFLMLFVFQVYP---TLSCLYACFYFYTTLYFPSEISVVMHLQWLVMY 3208



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>SFRP5_BOVIN (Q9XSC1) Secreted frizzled-related protein 5 precursor (sFRP-5)|
          Length = 315

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 14/63 (22%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
 Frame = +2

Query: 98  DQYQYTLWEKENSSTRTQNSKPK*TDTPQSSCFCYMI*FGDLLLP--IPPSAYTWMNQKP 271
           ++Y Y  W+ E    R+ +  P+  D P     C+ + +  + LP  +   +   + Q+ 
Sbjct: 28  EEYDYYGWQTEPLHGRSYSKPPQCLDIPADLPLCHTVGYKRMRLPNLLEHESLAEVKQQA 87

Query: 272 ASW 280
           +SW
Sbjct: 88  SSW 90



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>ARI2_HUMAN (O95376) Protein ariadne-2 homolog (ARI-2) (Triad1 protein)|
          Length = 493

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 21/77 (27%), Positives = 31/77 (40%)
 Frame = +1

Query: 22  YHFPCRITADSTGNNNTHRQC*QHARPVPVHSLGKRELFHTHTKFQTKIDRYSTKFMFLL 201
           Y F C    +S G  N H         V  HS+ K  L + H +    +DRY +    LL
Sbjct: 59  YQFTCLTYKESEGALNEHMTSLASVLKVS-HSVAKLILVNFHWQVSEILDRYKSNSAQLL 117

Query: 202 YDLIWRPSSSHPTISLH 252
            +   +P+ S    + H
Sbjct: 118 VEARVQPNPSKHVPTSH 134



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>TMK1_ARATH (P43298) Putative receptor protein kinase TMK1 precursor (EC|
           2.7.11.1)
          Length = 942

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 236 PPSAYTWMNQKPASWTH 286
           PPS++ W +  P  WTH
Sbjct: 41  PPSSFGWSDPDPCKWTH 57



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>R1AB_CVM2 (Q9PYA3) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)|
            [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)]
            [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like
            proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44);
            3C-like proteinase (
          Length = 7124

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = -1

Query: 182  VEYLSILVW--NFVCVWKSSLFPRECTGTGRACCQHCLCVLLFPVESAVIRHGKWYICW 12
            V  ++++VW  NF+ ++   ++P   T +    C +    L FP E +V+ H +W + +
Sbjct: 3096 VVVINVIVWCINFLMLFVFQVYP---TLSCLYACFYFYTTLYFPSEISVVMHLQWLVMY 3151



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>SFRP5_HUMAN (Q5T4F7) Secreted frizzled-related protein 5 precursor (sFRP-5)|
           (Secreted apoptosis-related protein 3) (SARP-3)
           (Frizzled-related protein 1b) (FRP-1b)
          Length = 317

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 14/63 (22%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
 Frame = +2

Query: 98  DQYQYTLWEKENSSTRTQNSKPK*TDTPQSSCFCYMI*FGDLLLP--IPPSAYTWMNQKP 271
           ++Y Y  W+ E    R+ +  P+  D P     C+ + +  + LP  +   +   + Q+ 
Sbjct: 30  EEYDYYGWQAEPLHGRSYSKPPQCLDIPADLPLCHTVGYKRMRLPNLLEHESLAEVKQQA 89

Query: 272 ASW 280
           +SW
Sbjct: 90  SSW 92



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>FGRL1_CHICK (Q7T2H2) Fibroblast growth factor receptor-like 1 precursor|
          Length = 487

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
 Frame = +1

Query: 31  PCRITADSTGNNNTHRQC*QHARPVPVHSLGKRELFHTHTKFQTKIDRYSTKFMFLLYDL 210
           P   T D  G   T  QC   +   PV    KR  + T +K+ + ID    KF+ L    
Sbjct: 247 PVNTTVDYGGT--TSFQCKVRSDVKPVIQWLKRVEYGTESKYNSTIDVGGQKFVVLPTGE 304

Query: 211 IW-RPSSSH 234
           +W RP  S+
Sbjct: 305 VWSRPDGSY 313



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>LEU2_SYNP6 (Q5MZY3) 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)|
           (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI)
          Length = 468

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -1

Query: 266 SGSSMCRLMVGWEEEGRQIKSYSRNMNF 183
           +G SMC  M   + EGRQI + S N NF
Sbjct: 405 AGCSMCLAMNPDKLEGRQISASSSNRNF 432



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>NPT2B_RAT (Q9JJ09) Sodium-dependent phosphate transport protein 2B|
           (Sodium/phosphate cotransporter 2B) (Na(+)/Pi
           cotransporter 2B) (Sodium-phosphate transport protein
           2B) (Na(+)-dependent phosphate cotransporter 2B)
           (NaPi-2b) (Solute carrier family 34 me
          Length = 695

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 15/48 (31%), Positives = 19/48 (39%), Gaps = 13/48 (27%)
 Frame = -1

Query: 173 LSILVWNFVCVWKSSL-------------FPRECTGTGRACCQHCLCV 69
           L +  WNF+ +W  SL             F R C    R CC+ C  V
Sbjct: 585 LKLRDWNFLPLWMHSLKPWDNIISLATSCFQRRCCCCCRVCCRVCCMV 632



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>GALC_HUMAN (P54803) Galactocerebrosidase precursor (EC 3.2.1.46) (GALCERase)|
           (Galactosylceramidase) (Galactosylceramide
           beta-galactosidase) (Galactocerebroside
           beta-galactosidase)
          Length = 669

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +1

Query: 160 TKIDRYSTKFMFLLYDLIW-RPSSSHPTISLHMDEPETSFMDT*HQETHHPL 312
           TK+ + S +F+F   D +W   S    T+SLH DE  T    T  ++  +PL
Sbjct: 412 TKLGKTSERFLFKQLDSLWLLDSDGSFTLSLHEDELFTLTTLTTGRKGSYPL 463



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>NPT2B_MOUSE (Q9DBP0) Sodium-dependent phosphate transport protein 2B|
           (Sodium/phosphate cotransporter 2B) (Na(+)/Pi
           cotransporter 2B) (Sodium-phosphate transport protein
           2B) (Na(+)-dependent phosphate cotransporter 2B)
           (NaPi-2b) (Solute carrier family 34
          Length = 697

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 15/48 (31%), Positives = 19/48 (39%), Gaps = 13/48 (27%)
 Frame = -1

Query: 173 LSILVWNFVCVWKSSL-------------FPRECTGTGRACCQHCLCV 69
           L +  WNF+ +W  SL             F R C    R CC+ C  V
Sbjct: 585 LKLRDWNFLPLWMHSLKPWDNVISLATTCFQRRCCCCCRVCCRVCCMV 632


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,403,067
Number of Sequences: 219361
Number of extensions: 1425737
Number of successful extensions: 3694
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 3554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3692
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 1370455656
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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