ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl53b04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY106802.1| Zea mays PCO145579 mRNA sequence 101 2e-18
2emb|AL606659.3|OSJN00108 Oryza sativa genomic DNA, chromosome 4,... 80 6e-12
3dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 80 6e-12
4emb|AL731630.2|OSJN00273 Oryza sativa genomic DNA, chromosome 4,... 80 6e-12
5dbj|AP000901.5| Homo sapiens genomic DNA, chromosome 11 clone:RP... 48 0.023
6dbj|AP002788.3| Homo sapiens genomic DNA, chromosome 11q, clone:... 48 0.023
7gb|AC021590.10| Homo sapiens chromosome 8, clone RP11-143H8, com... 46 0.090
8dbj|AP003474.2| Homo sapiens genomic DNA, chromosome 8q23, clone... 46 0.090
9dbj|AP004219.2| Homo sapiens genomic DNA, chromosome 8q23, clone... 46 0.090
10gb|AC152123.1| Genomic sequence for broccoli [Brassica oleracea ... 44 0.35
11emb|CR405683.10| Zebrafish DNA sequence from clone CH211-157B13 ... 42 1.4
12gb|AC158209.13| Medicago truncatula clone mth2-154h5, complete s... 42 1.4
13emb|CR925744.7| Zebrafish DNA sequence from clone RP71-37A9 in l... 42 1.4
14gb|AC163667.3| Mus musculus BAC clone RP23-53N20 from chromosome... 40 5.5
15gb|AY439826.1| Armigeres subalbatus ASAP ID: 38909 protein trans... 40 5.5
16gb|AC167438.2| Mus musculus BAC clone RP24-230L6 from chromosome... 40 5.5
17emb|CR356243.16| Zebrafish DNA sequence from clone CH211-209O4 i... 40 5.5
18emb|CR702620.1|CNS0G53C Tetraodon nigroviridis full-length cDNA 40 5.5
19gb|AC073418.6| Homo sapiens BAC clone RP11-334C6 from 7, complet... 40 5.5
20gb|AC123899.15| Medicago truncatula clone mth2-33n6, complete se... 40 5.5
21gb|AC127019.29| Medicago truncatula clone mth2-31b1, complete se... 40 5.5
22emb|CR847786.13| Zebrafish DNA sequence from clone DKEYP-9B4 in ... 40 5.5
23gb|AC163499.2| Mus musculus chromosome 5, clone RP23-250F1, comp... 40 5.5
24emb|AL713960.17| Mouse DNA sequence from clone RP23-448I9 on chr... 40 5.5
25emb|BX901883.5| Zebrafish DNA sequence from clone DKEY-151M15 in... 40 5.5
26gb|AC087485.6| Homo sapiens chromosome 15, clone RP11-570N16, co... 40 5.5
27gb|AC006065.3| Homo sapiens 12q24.2 BAC RPCI11-407A16 (Roswell P... 40 5.5
28gb|AF472484.1| Stereophyllum radiculosum tRNA-Leu gene, partial ... 40 5.5
29dbj|AK154446.1| Mus musculus NOD-derived CD11c +ve dendritic cel... 40 5.5
30gb|AC159881.2| Mus musculus BAC clone RP24-493B12 from chromosom... 40 5.5
31tpg|BK001629.1| TPA: TPA_exp: Mus musculus regulator of sex-limi... 40 5.5
32gb|AC136896.6| Homo sapiens chromosome 15, clone RP11-860O1, com... 40 5.5
33gb|AC135350.6| Homo sapiens chromosome 15, clone RP13-946E15, co... 40 5.5
34gb|AC004822.1|AC004822 Homo sapiens PAC clone RP1-170D19 from Xq... 40 5.5
35emb|BX530091.6| Zebrafish DNA sequence from clone DKEYP-92C9 in ... 40 5.5
36gb|AC101850.8| Mus musculus chromosome 5, clone RP23-269D16, com... 40 5.5
37gb|CP000225.1| Drosophila melanogaster genomic scaffold 21100002... 40 5.5
38gb|AC136215.5| Mus musculus BAC clone RP23-148L8 from 6, complet... 40 5.5
39gb|AC139378.4| Mus musculus BAC clone RP23-265F20 from 9, comple... 40 5.5
40emb|CT009732.8| Mouse DNA sequence from clone RP23-72O20 on chro... 40 5.5
41emb|BX088728.23| Zebrafish DNA sequence from clone CH211-126J24,... 40 5.5
42emb|AL935053.6| Zebrafish DNA sequence from clone CH211-162M14, ... 40 5.5
43emb|AL669900.15| Mouse DNA sequence from clone RP23-254J17 on ch... 40 5.5
44dbj|AP004218.2| Homo sapiens genomic DNA, chromosome 8q23, clone... 40 5.5 
>gb|AY106802.1| Zea mays PCO145579 mRNA sequence
          Length = 2369

 Score =  101 bits (51), Expect = 2e-18
 Identities = 99/115 (86%)
 Strand = Plus / Minus

                                                                        
Query: 297  tcccactgcagtttctcccaccattcaactgaactacatatctgcttcaacttcccatag 356
            ||||||| ||||||||||||||||||||||||||  || | ||||||||  |||||| ||
Sbjct: 2084 tcccactccagtttctcccaccattcaactgaaccgcacacctgcttcagtttcccacag 2025

                                                                   
Query: 357  ttatgtgtggagctcagcgggatgcttctcagatttgggcaattctccacccgga 411
            || |  |||  |||||| ||||||||||||||||| ||||||| |||||||||||
Sbjct: 2024 ttgtacgtgctgctcagtgggatgcttctcagattcgggcaatcctccacccgga 1970



 Score = 46.1 bits (23), Expect = 0.090
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 242  ctgtcagattggaatgaagtacttgct 268
            ||||||||||||||||||| |||||||
Sbjct: 2130 ctgtcagattggaatgaagaacttgct 2104
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>emb|AL606659.3|OSJN00108 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0070J16,
             complete sequence
          Length = 130718

 Score = 79.8 bits (40), Expect = 6e-12
 Identities = 127/156 (81%)
 Strand = Plus / Plus

                                                                         
Query: 242   ctgtcagattggaatgaagtacttgctgtccagatatgccacctcgtccctattttccca 301
             ||||||||||||||||||||||||||| |||| || ||||||| | ||| | |  |||||
Sbjct: 61604 ctgtcagattggaatgaagtacttgctctccatatgtgccaccgcctccttgtcctccca 61663

                                                                         
Query: 302   ctgcagtttctcccaccattcaactgaactacatatctgcttcaacttcccatagttatg 361
             | ||||||||| |||||| |||  ||||| ||| || |||||||  || ||| |||| ||
Sbjct: 61664 cagcagtttcttccaccaatcagatgaaccacaaatttgcttcagtttaccacagttgtg 61723

                                                 
Query: 362   tgtggagctcagcgggatgcttctcagatttgggca 397
              |||  || ||| ||||||| ||||| |||||||||
Sbjct: 61724 agtgctgcacagtgggatgcgtctcaaatttgggca 61759
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 79.8 bits (40), Expect = 6e-12
 Identities = 127/156 (81%)
 Strand = Plus / Plus

                                                                            
Query: 242      ctgtcagattggaatgaagtacttgctgtccagatatgccacctcgtccctattttccca 301
                ||||||||||||||||||||||||||| |||| || ||||||| | ||| | |  |||||
Sbjct: 25681877 ctgtcagattggaatgaagtacttgctctccatatgtgccaccgcctccttgtcctccca 25681936

                                                                            
Query: 302      ctgcagtttctcccaccattcaactgaactacatatctgcttcaacttcccatagttatg 361
                | ||||||||| |||||| |||  ||||| ||| || |||||||  || ||| |||| ||
Sbjct: 25681937 cagcagtttcttccaccaatcagatgaaccacaaatttgcttcagtttaccacagttgtg 25681996

                                                    
Query: 362      tgtggagctcagcgggatgcttctcagatttgggca 397
                 |||  || ||| ||||||| ||||| |||||||||
Sbjct: 25681997 agtgctgcacagtgggatgcgtctcaaatttgggca 25682032
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>emb|AL731630.2|OSJN00273 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0072M01,
            complete sequence
          Length = 127712

 Score = 79.8 bits (40), Expect = 6e-12
 Identities = 127/156 (81%)
 Strand = Plus / Plus

                                                                        
Query: 242  ctgtcagattggaatgaagtacttgctgtccagatatgccacctcgtccctattttccca 301
            ||||||||||||||||||||||||||| |||| || ||||||| | ||| | |  |||||
Sbjct: 4804 ctgtcagattggaatgaagtacttgctctccatatgtgccaccgcctccttgtcctccca 4863

                                                                        
Query: 302  ctgcagtttctcccaccattcaactgaactacatatctgcttcaacttcccatagttatg 361
            | ||||||||| |||||| |||  ||||| ||| || |||||||  || ||| |||| ||
Sbjct: 4864 cagcagtttcttccaccaatcagatgaaccacaaatttgcttcagtttaccacagttgtg 4923

                                                
Query: 362  tgtggagctcagcgggatgcttctcagatttgggca 397
             |||  || ||| ||||||| ||||| |||||||||
Sbjct: 4924 agtgctgcacagtgggatgcgtctcaaatttgggca 4959
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>dbj|AP000901.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-686G14, complete
              sequence
          Length = 205903

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                      
Query: 174    ttatttgtgtgaagaatgaagaca 197
              ||||||||||||||||||||||||
Sbjct: 163164 ttatttgtgtgaagaatgaagaca 163141
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>dbj|AP002788.3| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-347E10, complete
             sequence
          Length = 174311

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 174   ttatttgtgtgaagaatgaagaca 197
             ||||||||||||||||||||||||
Sbjct: 52708 ttatttgtgtgaagaatgaagaca 52685
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>gb|AC021590.10| Homo sapiens chromosome 8, clone RP11-143H8, complete sequence
          Length = 171427

 Score = 46.1 bits (23), Expect = 0.090
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 290    cctattttcccactgcagtttct 312
              |||||||||||||||||||||||
Sbjct: 118251 cctattttcccactgcagtttct 118273
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>dbj|AP003474.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1942A3, complete
             sequence
          Length = 165901

 Score = 46.1 bits (23), Expect = 0.090
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 290   cctattttcccactgcagtttct 312
             |||||||||||||||||||||||
Sbjct: 41625 cctattttcccactgcagtttct 41647
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>dbj|AP004219.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1222D11, complete
              sequence
          Length = 159712

 Score = 46.1 bits (23), Expect = 0.090
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 290    cctattttcccactgcagtttct 312
              |||||||||||||||||||||||
Sbjct: 103567 cctattttcccactgcagtttct 103589
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>gb|AC152123.1| Genomic sequence for broccoli [Brassica oleracea L. (Italica group)]
             BAC clone B21F5, complete sequence
          Length = 82329

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 40    gtaaacaaattgtattacatga 61
             ||||||||||||||||||||||
Sbjct: 49833 gtaaacaaattgtattacatga 49812
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>emb|CR405683.10| Zebrafish DNA sequence from clone CH211-157B13 in linkage group 2,
              complete sequence
          Length = 166899

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 318    cattcaactgaactacatatc 338
              |||||||||||||||||||||
Sbjct: 100977 cattcaactgaactacatatc 100997
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>gb|AC158209.13| Medicago truncatula clone mth2-154h5, complete sequence
          Length = 93864

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 28/29 (96%), Gaps = 1/29 (3%)
 Strand = Plus / Minus

                                          
Query: 220   aaaagccattggaat-tggggttctgtca 247
             ||||||||||||||| |||||||||||||
Sbjct: 54302 aaaagccattggaatgtggggttctgtca 54274
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>emb|CR925744.7| Zebrafish DNA sequence from clone RP71-37A9 in linkage group 11,
             complete sequence
          Length = 169494

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 318   cattcaactgaactacatatc 338
             |||||||||||||||||||||
Sbjct: 26061 cattcaactgaactacatatc 26041
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>gb|AC163667.3| Mus musculus BAC clone RP23-53N20 from chromosome 13, complete sequence
          Length = 220804

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 179   tgtgtgaagaatgaagacag 198
             ||||||||||||||||||||
Sbjct: 55465 tgtgtgaagaatgaagacag 55484
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>gb|AY439826.1| Armigeres subalbatus ASAP ID: 38909 protein translocation complex
           Sec61-gamma subunit mRNA sequence
          Length = 766

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 32  tgatttaagtaaacaaattg 51
           ||||||||||||||||||||
Sbjct: 676 tgatttaagtaaacaaattg 695
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>gb|AC167438.2| Mus musculus BAC clone RP24-230L6 from chromosome 6, complete sequence
          Length = 147111

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 377    gatgcttctcagatttgggc 396
              ||||||||||||||||||||
Sbjct: 131378 gatgcttctcagatttgggc 131359
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>emb|CR356243.16| Zebrafish DNA sequence from clone CH211-209O4 in linkage group 6,
              complete sequence
          Length = 216472

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 49     ttgtattacatgaatgcaat 68
              ||||||||||||||||||||
Sbjct: 101044 ttgtattacatgaatgcaat 101025
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>emb|CR702620.1|CNS0G53C Tetraodon nigroviridis full-length cDNA
          Length = 1468

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 381 cttctcagatttgggcaattctcc 404
           |||||||||||||||||| |||||
Sbjct: 17  cttctcagatttgggcaaatctcc 40
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>gb|AC073418.6| Homo sapiens BAC clone RP11-334C6 from 7, complete sequence
          Length = 83743

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 56    acatgaatgcaatatcagcaaattgcagagta 87
             |||||||||||||||||| ||  |||||||||
Sbjct: 55482 acatgaatgcaatatcagtaatatgcagagta 55451
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>gb|AC123899.15| Medicago truncatula clone mth2-33n6, complete sequence
          Length = 127126

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 59    tgaatgcaatatcagcaaattgca 82
             |||||||||||| |||||||||||
Sbjct: 47002 tgaatgcaatataagcaaattgca 47025
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>gb|AC127019.29| Medicago truncatula clone mth2-31b1, complete sequence
          Length = 122810

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 143   acaaattttaaacaatttaa 162
             ||||||||||||||||||||
Sbjct: 46314 acaaattttaaacaatttaa 46333
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>emb|CR847786.13| Zebrafish DNA sequence from clone DKEYP-9B4 in linkage group 13, complete
              sequence
          Length = 156551

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 49     ttgtattacatgaatgcaat 68
              ||||||||||||||||||||
Sbjct: 115296 ttgtattacatgaatgcaat 115315
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>gb|AC163499.2| Mus musculus chromosome 5, clone RP23-250F1, complete sequence
          Length = 155609

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 25    ttgactgtgatttaagtaaa 44
             ||||||||||||||||||||
Sbjct: 19792 ttgactgtgatttaagtaaa 19773
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>emb|AL713960.17| Mouse DNA sequence from clone RP23-448I9 on chromosome 11 Contains the
             5' end of the Car10 gene for carbonic anhydrase 10 and one
             CpG island, complete sequence
          Length = 203449

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 147   attttaaacaatttaagaggagat 170
             ||||||||| ||||||||||||||
Sbjct: 13096 attttaaactatttaagaggagat 13119
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>emb|BX901883.5| Zebrafish DNA sequence from clone DKEY-151M15 in linkage group 3,
              complete sequence
          Length = 241961

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 49     ttgtattacatgaatgcaat 68
              ||||||||||||||||||||
Sbjct: 153863 ttgtattacatgaatgcaat 153844
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>gb|AC087485.6| Homo sapiens chromosome 15, clone RP11-570N16, complete sequence
          Length = 169771

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 338   ctgcttcaacttcccatagttatg 361
             |||||||||| |||||||||||||
Sbjct: 77672 ctgcttcaacatcccatagttatg 77649
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>gb|AC006065.3| Homo sapiens 12q24.2 BAC RPCI11-407A16 (Roswell Park Cancer Institute
             Human BAC Library) complete sequence
          Length = 191134

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 299   ccactgcagtttctcccacc 318
             ||||||||||||||||||||
Sbjct: 73100 ccactgcagtttctcccacc 73119
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>gb|AF472484.1| Stereophyllum radiculosum tRNA-Leu gene, partial sequence;
           trnL-trnF intergenic spacer, complete sequence; and
           tRNA-Phe gene, partial sequence; chloroplast genes for
           chloroplast products
          Length = 461

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 143 acaaattttaaacaatttaa 162
           ||||||||||||||||||||
Sbjct: 208 acaaattttaaacaatttaa 189
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>dbj|AK154446.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN
           full-length enriched library, clone:F630034G10
           product:LSM8 homolog, U6 small nuclear RNA associated
           (S. cerevisiae), full insert sequence
          Length = 3354

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 377 gatgcttctcagatttgggc 396
           ||||||||||||||||||||
Sbjct: 418 gatgcttctcagatttgggc 437
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>gb|AC159881.2| Mus musculus BAC clone RP24-493B12 from chromosome 9, complete sequence
          Length = 126762

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 294   ttttcccactgcagtttctcccac 317
             |||| |||||||||||||||||||
Sbjct: 26015 ttttgccactgcagtttctcccac 26038
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>tpg|BK001629.1| TPA: TPA_exp: Mus musculus regulator of sex-limitation candidate 18
            (Rslcan18) mRNA, complete cds
          Length = 2981

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 179  tgtgtgaagaatgaagacag 198
            ||||||||||||||||||||
Sbjct: 2693 tgtgtgaagaatgaagacag 2674
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>gb|AC136896.6| Homo sapiens chromosome 15, clone RP11-860O1, complete sequence
          Length = 214946

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 338   ctgcttcaacttcccatagttatg 361
             |||||||||| |||||||||||||
Sbjct: 97112 ctgcttcaacatcccatagttatg 97089
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>gb|AC135350.6| Homo sapiens chromosome 15, clone RP13-946E15, complete sequence
          Length = 158316

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 338   ctgcttcaacttcccatagttatg 361
             |||||||||| |||||||||||||
Sbjct: 33823 ctgcttcaacatcccatagttatg 33846
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>gb|AC004822.1|AC004822 Homo sapiens PAC clone RP1-170D19 from Xq23, complete sequence
          Length = 127824

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 34     atttaagtaaacaaattgta 53
              ||||||||||||||||||||
Sbjct: 116534 atttaagtaaacaaattgta 116553
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>emb|BX530091.6| Zebrafish DNA sequence from clone DKEYP-92C9 in linkage group 19,
              complete sequence
          Length = 180025

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 49     ttgtattacatgaatgcaat 68
              ||||||||||||||||||||
Sbjct: 129773 ttgtattacatgaatgcaat 129754
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>gb|AC101850.8| Mus musculus chromosome 5, clone RP23-269D16, complete sequence
          Length = 184289

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 25     ttgactgtgatttaagtaaa 44
              ||||||||||||||||||||
Sbjct: 111848 ttgactgtgatttaagtaaa 111829
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>gb|CP000225.1| Drosophila melanogaster genomic scaffold 211000022280724
          Length = 820587

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 145    aaattttaaacaatttaaga 164
              ||||||||||||||||||||
Sbjct: 788203 aaattttaaacaatttaaga 788184
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>gb|AC136215.5| Mus musculus BAC clone RP23-148L8 from 6, complete sequence
          Length = 167126

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 377  gatgcttctcagatttgggc 396
            ||||||||||||||||||||
Sbjct: 1891 gatgcttctcagatttgggc 1872
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>gb|AC139378.4| Mus musculus BAC clone RP23-265F20 from 9, complete sequence
          Length = 256632

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 215    catacaaaagccattggaat 234
              ||||||||||||||||||||
Sbjct: 106671 catacaaaagccattggaat 106652
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>emb|CT009732.8| Mouse DNA sequence from clone RP23-72O20 on chromosome 9, complete
              sequence
          Length = 239257

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 294    ttttcccactgcagtttctcccac 317
              |||| |||||||||||||||||||
Sbjct: 236249 ttttgccactgcagtttctcccac 236272
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>emb|BX088728.23| Zebrafish DNA sequence from clone CH211-126J24, complete sequence
          Length = 168184

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 142   tacaaattttaaacaattta 161
             ||||||||||||||||||||
Sbjct: 92473 tacaaattttaaacaattta 92492
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>emb|AL935053.6| Zebrafish DNA sequence from clone CH211-162M14, complete sequence
          Length = 138341

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 49     ttgtattacatgaatgcaat 68
              ||||||||||||||||||||
Sbjct: 105237 ttgtattacatgaatgcaat 105218
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>emb|AL669900.15| Mouse DNA sequence from clone RP23-254J17 on chromosome X, complete
              sequence
          Length = 207870

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 175    tatttgtgtgaagaatgaag 194
              ||||||||||||||||||||
Sbjct: 193005 tatttgtgtgaagaatgaag 192986
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>dbj|AP004218.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1198A1
          Length = 195623

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 300   cactgcagtttctcccacca 319
             ||||||||||||||||||||
Sbjct: 93362 cactgcagtttctcccacca 93343


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,185,548
Number of Sequences: 3902068
Number of extensions: 4185548
Number of successful extensions: 89980
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 89866
Number of HSP's gapped (non-prelim): 115
length of query: 413
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 391
effective length of database: 17,147,199,772
effective search space: 6704555110852
effective search space used: 6704555110852
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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