ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl53b03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GLMS_TREPA (O83833) Glucosamine--fructose-6-phosphate aminotrans... 30 1.9
2PHSA_SALTY (P37600) Thiosulfate reductase precursor (EC 1.-.-.-) 28 4.3
3LSHB_HORSE (P08751) Lutropin/choriogonadotropin beta chain precu... 28 4.3
4CATA_ASPFU (P78574) Catalase A (EC 1.11.1.6) (Fast catalase) 28 4.3
5CATA_EMENI (P55305) Catalase A (EC 1.11.1.6) (Spore-specific cat... 28 4.3
6LSHB_EQUBU (O46641) Lutropin/choriogonadotropin beta chain precu... 28 7.4
7LOX15_PONPY (Q5RBE8) Arachidonate 15-lipoxygenase (EC 1.13.11.33... 28 7.4
8M4A8A_MOUSE (Q99N10) Membrane-spanning 4-domains subfamily A mem... 28 7.4
9RIF1_MOUSE (Q6PR54) Telomere-associated protein RIF1 (Rap1-inter... 27 9.6
10ICP4_EHV1V (Q6S6U0) Trans-acting transcriptional protein ICP4 (1... 27 9.6
11ICP4_EHV1K (P17473) Trans-acting transcriptional protein ICP4 (1... 27 9.6
12ICP4_EHV1B (P28925) Trans-acting transcriptional protein ICP4 (1... 27 9.6

>GLMS_TREPA (O83833) Glucosamine--fructose-6-phosphate aminotransferase|
           [isomerizing] (EC 2.6.1.16) (Hexosephosphate
           aminotransferase) (D-fructose-6-phosphate
           amidotransferase) (GFAT)
           (L-glutamine-D-fructose-6-phosphate amidotransferase)
           (Glucosamine-6-ph
          Length = 634

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -1

Query: 177 CN*PQSCLVARMDRHATCTHFGGHVGVELVVSFDLKLICICI 52
           CN  +S LV   D     TH G  +GV    SF  +L+C+ +
Sbjct: 387 CNGARSTLVRESDA-VLLTHAGSEIGVASTKSFTTQLVCLLV 427



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>PHSA_SALTY (P37600) Thiosulfate reductase precursor (EC 1.-.-.-)|
          Length = 758

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 20  SSKDVTFSTHLIHIQISLRSKDTTSSTPTCP 112
           SSK  + S+HL H+  +  S +T +   TCP
Sbjct: 145 SSKSGSLSSHLFHLATAFGSPNTFTHASTCP 175



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>LSHB_HORSE (P08751) Lutropin/choriogonadotropin beta chain precursor|
           (LSH-B/CG-B) (Lutenizing hormone beta subunit)
          Length = 169

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 18/52 (34%), Positives = 24/52 (46%)
 Frame = -1

Query: 168 PQSCLVARMDRHATCTHFGGHVGVELVVSFDLKLICICIKCVLKVTSLELIR 13
           PQ     R  R A+    G   GV+ +VSF + L C C  C +K T   + R
Sbjct: 73  PQPVCTYRELRFASIRLPGCPPGVDPMVSFPVALSCHCGPCQIKTTDCGVFR 124



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>CATA_ASPFU (P78574) Catalase A (EC 1.11.1.6) (Fast catalase)|
          Length = 750

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -1

Query: 333 PLGFDLMQVFGVPQHGMLGGKGCRHGGSFTMLLHLGI 223
           P  + +MQ FGV    ++  +G RH   F  + HLG+
Sbjct: 228 PRSYRMMQGFGVNTFALVNKEGKRHFVKFHWIPHLGV 264



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>CATA_EMENI (P55305) Catalase A (EC 1.11.1.6) (Spore-specific catalase)|
          Length = 744

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -1

Query: 333 PLGFDLMQVFGVPQHGMLGGKGCRHGGSFTMLLHLGI 223
           P  + +MQ FGV    ++  +G RH   F  + HLG+
Sbjct: 228 PRSYRMMQGFGVNTFSLVNKEGKRHFVKFHWIPHLGV 264



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>LSHB_EQUBU (O46641) Lutropin/choriogonadotropin beta chain precursor|
           (LSH-B/CG-B) (Lutenizing hormone beta subunit)
          Length = 169

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 18/46 (39%), Positives = 22/46 (47%)
 Frame = -1

Query: 168 PQSCLVARMDRHATCTHFGGHVGVELVVSFDLKLICICIKCVLKVT 31
           PQ     R  R A+    G   GV+ +VSF + L C C  C LK T
Sbjct: 73  PQPVCTYRELRFASIRLPGCPPGVDPMVSFPVALSCHCGPCRLKTT 118



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>LOX15_PONPY (Q5RBE8) Arachidonate 15-lipoxygenase (EC 1.13.11.33) (Arachidonate|
           omega-6 lipoxygenase) (15-LOX)
          Length = 661

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -2

Query: 266 VVTEDPSLCSYTSAFAGGSSKNIFIPSTRAVTNRNLVWLPEWTG 135
           ++T+D   C++ S    G+   +  P  R V    ++ LPE TG
Sbjct: 69  LLTDDAWFCNWISVQGPGAGDEVRFPCYRWVEGNGVLSLPEGTG 112



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>M4A8A_MOUSE (Q99N10) Membrane-spanning 4-domains subfamily A member 8A (CD20|
           antigen-like 5) (Fragment)
          Length = 287

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +1

Query: 97  NSYMSTKVGTSGMPVHSGNQTRLRLVTALVDGIKMFLDEPPA 222
           NSY         MP++  NQ ++ +++  + G+   + EPPA
Sbjct: 56  NSYPVVPGTVPQMPIYPSNQPQVHVISGHLPGLVPAMTEPPA 97



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>RIF1_MOUSE (Q6PR54) Telomere-associated protein RIF1 (Rap1-interacting factor|
           1 homolog) (mRif1)
          Length = 2419

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 20/57 (35%), Positives = 27/57 (47%)
 Frame = +1

Query: 139 VHSGNQTRLRLVTALVDGIKMFLDEPPANAEV*EHSEGSSVTTTFTSEHAMLGNSKN 309
           VHS  +  LR  TAL  G+ + L +    A + EH     +TT   SE   L  +KN
Sbjct: 193 VHSAQKVHLRGATALEMGMPLLLQKQQEIALITEH----LMTTKLISELQKLFKNKN 245



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>ICP4_EHV1V (Q6S6U0) Trans-acting transcriptional protein ICP4 (155 kDa|
            immediate-early protein)
          Length = 1487

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = -2

Query: 230  SAFAGGSSKNIFIPSTRAVTNRNLVWLPEWTGMPLVPTL 114
            S   GG S  +     R +T R+  W   WTG P V  L
Sbjct: 1122 SDLKGGLSALLAALGNRILTKRSHAWAGNWTGAPDVSAL 1160



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>ICP4_EHV1K (P17473) Trans-acting transcriptional protein ICP4 (155 kDa|
            immediate-early protein)
          Length = 1487

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = -2

Query: 230  SAFAGGSSKNIFIPSTRAVTNRNLVWLPEWTGMPLVPTL 114
            S   GG S  +     R +T R+  W   WTG P V  L
Sbjct: 1122 SDLKGGLSALLAALGNRILTKRSHAWAGNWTGAPDVSAL 1160



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>ICP4_EHV1B (P28925) Trans-acting transcriptional protein ICP4 (155 kDa|
            immediate-early protein)
          Length = 1487

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = -2

Query: 230  SAFAGGSSKNIFIPSTRAVTNRNLVWLPEWTGMPLVPTL 114
            S   GG S  +     R +T R+  W   WTG P V  L
Sbjct: 1122 SDLKGGLSALLAALGNRILTKRSHAWAGNWTGAPDVSAL 1160


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,148,800
Number of Sequences: 219361
Number of extensions: 1209543
Number of successful extensions: 3139
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3092
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3139
length of database: 80,573,946
effective HSP length: 89
effective length of database: 61,050,817
effective search space used: 1465219608
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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