>PNCB_RHIME (Q92S49) Nicotinate phosphoribosyltransferase (EC 2.4.2.11)|
           (NAPRTase)
          Length = 434

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = -2

Query: 219 FILEELTWKGCKHALDDADIFGPNFVAWLTESILPKPEL 103
           F  +E+ W           IF P F+AWL    LP+ EL
Sbjct: 81  FTKKEMIWLAGNSFYGRTQIFSPEFLAWLARFRLPEYEL 119

>PNCB_RHILO (Q98D24) Nicotinate phosphoribosyltransferase (EC 2.4.2.11)|
           (NAPRTase)
          Length = 434

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -2

Query: 219 FILEELTWKGCKHALDDADIFGPNFVAWLTESILPKPEL 103
           F  +E+ W G  +      IF P F+AWL    LP  EL
Sbjct: 81  FSKKEMIWLGGNNFYGRKQIFEPEFLAWLEGFRLPDYEL 119

>FREM2_LYTVA (Q9GV77) Extracellular matrix protein 3 precursor (FREM2 homolog)|
          Length = 3103

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
 Frame = +2

Query: 104  SSGLGKMDSVNHATKLGPKMSASSSACLHPFHVSSSKMK-----GPQ 229
            SSG+GK ++ +HA     +  A+S A + P     + MK     GPQ
Sbjct: 2983 SSGIGKRETEHHAISSRQRRQANSEALVDPAQGQGTNMKRVALQGPQ 3029

>NEUA_ONCMY (Q90WG6) N-acylneuraminate cytidylyltransferase (EC 2.7.7.43)|
           (CMP-N-acetylneuraminic acid synthetase) (CMP-NeuNAc
           synthetase)
          Length = 432

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
 Frame = +2

Query: 35  LSRTSKESAHMYHAQGLRVK*NPSSGLGKMDSVNHATKLGPKMSA-----SSSACLHPFH 199
           + + +K      H +   V  + SS L   D++    +L P++       ++S CLHPFH
Sbjct: 84  IEKVAKTWGAQVHRRSPEVSKDSSSSL---DTIQEFARLNPEVDVICHIQATSPCLHPFH 140

Query: 200 VSSS 211
           +  +
Sbjct: 141 LKEA 144

>PNCB_BRUME (Q8YEP2) Nicotinate phosphoribosyltransferase (EC 2.4.2.11)|
           (NAPRTase)
          Length = 434

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -2

Query: 219 FILEELTWKGCKHALDDADIFGPNFVAWLTESILPKPEL 103
           F  +E+ W           IF P F+AWL +  LP+ EL
Sbjct: 81  FSKKEMIWLAGNTFYGRKQIFQPEFLAWLHDCQLPEYEL 119

>RS1_CHLTR (O84100) 30S ribosomal protein S1|
          Length = 569

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = -2

Query: 333 SKRATRQTQATLDERAAHSGSILLGHTLYLDDEGACGPFILEELTWKGCKH 181
           SK+A    Q T+ ER       +    ++LD +G  G   + ++TWK  +H
Sbjct: 208 SKKAELIEQITIGERRKGIVKNITDFGVFLDLDGIDGLLHITDMTWKRIRH 258

>RS1_CHLMU (P38016) 30S ribosomal protein S1 (70 kDa antigen)|
          Length = 570

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = -2

Query: 333 SKRATRQTQATLDERAAHSGSILLGHTLYLDDEGACGPFILEELTWKGCKH 181
           SK+A    Q T+ ER       +    ++LD +G  G   + ++TWK  +H
Sbjct: 208 SKKAELIEQITIGERRKGIVKNITDFGVFLDLDGIDGLLHITDMTWKRIRH 258

>PNCB_BRUSU (Q8G340) Nicotinate phosphoribosyltransferase (EC 2.4.2.11)|
           (NAPRTase)
          Length = 434

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -2

Query: 219 FILEELTWKGCKHALDDADIFGPNFVAWLTESILPKPEL 103
           F  +E+ W           IF P F+AWL +  LP+ EL
Sbjct: 81  FSKKEMIWLAGNTFYGRKQIFQPEFLAWLHDFQLPEYEL 119

>END4_CHLMU (Q9PJB8) Probable endonuclease 4 (EC 3.1.21.2) (Endonuclease IV)|
           (Endodeoxyribonuclease IV)
          Length = 288

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
 Frame = -2

Query: 339 WRSKRATR----QTQATLDERAAHSGSILLGHTLYLDDEGACGPFILEE 205
           W+ +  T+    Q Q  LDE +    S ++ H  YL++ GA  P ILE+
Sbjct: 47  WKRRSLTQNMIEQFQTALDETSL---SYIMSHAGYLNNPGAPNPEILEK 92


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,155,370
Number of Sequences: 219361
Number of extensions: 1005408
Number of successful extensions: 1917
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1917
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 1396778976
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)