Clone Name | rbastl53b02 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_202718.1| Arabidopsis thaliana alpha-galactosidase/ hydrolase, hydrolyzing O-glycosyl compounds AT3G56310 transcript variant AT3G56310.2 mRNA, complete cds Length = 1879 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 156 caaaaatgtctgcatcatcca 176 ||||||||||||||||||||| Sbjct: 534 caaaaatgtctgcatcatcca 514
>ref|NM_115489.4| Arabidopsis thaliana alpha-galactosidase/ hydrolase, hydrolyzing O-glycosyl compounds AT3G56310 transcript variant AT3G56310.1 mRNA, complete cds Length = 1975 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 156 caaaaatgtctgcatcatcca 176 ||||||||||||||||||||| Sbjct: 630 caaaaatgtctgcatcatcca 610
>gb|AY114020.1| Arabidopsis thaliana putative alpha-galactosidase (At3g56310) mRNA, complete cds Length = 1345 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 156 caaaaatgtctgcatcatcca 176 ||||||||||||||||||||| Sbjct: 547 caaaaatgtctgcatcatcca 527
>gb|AY074321.1| Arabidopsis thaliana putative alpha-galactosidase (At3g56310) mRNA, complete cds Length = 1527 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 156 caaaaatgtctgcatcatcca 176 ||||||||||||||||||||| Sbjct: 606 caaaaatgtctgcatcatcca 586
>emb|AL163763.1|ATF18O21 Arabidopsis thaliana DNA chromosome 3, BAC clone F18O21 Length = 99492 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 156 caaaaatgtctgcatcatcca 176 ||||||||||||||||||||| Sbjct: 87064 caaaaatgtctgcatcatcca 87044
>gb|AC098576.7| Drosophila melanogaster X BAC RP98-3E12 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 175262 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 167 gcatcatccagtgcatgttta 187 ||||||||||||||||||||| Sbjct: 80134 gcatcatccagtgcatgttta 80114
>emb|BX822543.1|CNS0A7LR Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB47ZF09 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1407 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 156 caaaaatgtctgcatcatcca 176 ||||||||||||||||||||| Sbjct: 580 caaaaatgtctgcatcatcca 560
>emb|BX822739.1|CNS0A62G Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB60ZF05 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1429 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 156 caaaaatgtctgcatcatcca 176 ||||||||||||||||||||| Sbjct: 579 caaaaatgtctgcatcatcca 559
>emb|BX825040.1|CNS0A5R8 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH90ZH12 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1403 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 156 caaaaatgtctgcatcatcca 176 ||||||||||||||||||||| Sbjct: 583 caaaaatgtctgcatcatcca 563
>emb|BX822949.1|CNS0A5TS Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB75ZB02 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1350 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 156 caaaaatgtctgcatcatcca 176 ||||||||||||||||||||| Sbjct: 510 caaaaatgtctgcatcatcca 490
>emb|BX823822.1|CNS0A5CU Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS7ZD12 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1467 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 156 caaaaatgtctgcatcatcca 176 ||||||||||||||||||||| Sbjct: 600 caaaaatgtctgcatcatcca 580
>emb|BX823782.1|CNS0A5D5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS75ZB02 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1482 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 156 caaaaatgtctgcatcatcca 176 ||||||||||||||||||||| Sbjct: 630 caaaaatgtctgcatcatcca 610
>emb|BX823606.1|CNS0A5EQ Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS56ZB03 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1464 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 156 caaaaatgtctgcatcatcca 176 ||||||||||||||||||||| Sbjct: 580 caaaaatgtctgcatcatcca 560
>emb|BX823461.1|CNS0A5D8 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS40ZG10 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1456 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 156 caaaaatgtctgcatcatcca 176 ||||||||||||||||||||| Sbjct: 594 caaaaatgtctgcatcatcca 574
>emb|BX823316.1|CNS0A5G0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS21ZH04 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1487 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 156 caaaaatgtctgcatcatcca 176 ||||||||||||||||||||| Sbjct: 626 caaaaatgtctgcatcatcca 606
>emb|BX823260.1|CNS0A5BJ Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS18ZC02 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1476 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 156 caaaaatgtctgcatcatcca 176 ||||||||||||||||||||| Sbjct: 573 caaaaatgtctgcatcatcca 553
>emb|BX823219.1|CNS0A5DO Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS12ZB05 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1411 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 156 caaaaatgtctgcatcatcca 176 ||||||||||||||||||||| Sbjct: 561 caaaaatgtctgcatcatcca 541
>emb|BX826044.1|CNS0A543 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL81ZB07 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1440 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 156 caaaaatgtctgcatcatcca 176 ||||||||||||||||||||| Sbjct: 596 caaaaatgtctgcatcatcca 576
>gb|AE003421.2| Drosophila melanogaster chromosome X, section 5 of 74 of the complete sequence Length = 304204 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 167 gcatcatccagtgcatgttta 187 ||||||||||||||||||||| Sbjct: 287937 gcatcatccagtgcatgttta 287917
>emb|AL030994.1|DMC4F1 Drosophila melanogaster cosmid clone 4F1 Length = 44352 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 167 gcatcatccagtgcatgttta 187 ||||||||||||||||||||| Sbjct: 20473 gcatcatccagtgcatgttta 20453
>gb|AC102376.14| Mus musculus chromosome 18, clone RP23-314H11, complete sequence Length = 190153 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 304 tgcttgagtctgtcttgtag 323 |||||||||||||||||||| Sbjct: 132601 tgcttgagtctgtcttgtag 132620
>ref|NM_204546.2| Gallus gallus RAD52 motif 1 (RDM1), mRNA Length = 1411 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 145 aaaattaggcccaaaaatgt 164 |||||||||||||||||||| Sbjct: 998 aaaattaggcccaaaaatgt 1017
>gb|AC125141.4| Mus musculus BAC clone RP24-333C3 from chromosome 17, complete sequence Length = 148447 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 312 tctgtcttgtagccctttta 331 |||||||||||||||||||| Sbjct: 74368 tctgtcttgtagccctttta 74349
>gb|AC125174.3| Mus musculus BAC clone RP24-544G11 from chromosome 16, complete sequence Length = 196646 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 79 aggactcagggtaaaatgaa 98 |||||||||||||||||||| Sbjct: 122288 aggactcagggtaaaatgaa 122307
>emb|CR407555.9| Zebrafish DNA sequence from clone DKEY-260H8 in linkage group 5, complete sequence Length = 156095 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 171 catccagtgcatgtttacac 190 |||||||||||||||||||| Sbjct: 1074 catccagtgcatgtttacac 1093
>dbj|AB248100.1| Gallus gallus RDM1 gene for RAD52 motif 1, complete cds Length = 5599 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 145 aaaattaggcccaaaaatgt 164 |||||||||||||||||||| Sbjct: 4408 aaaattaggcccaaaaatgt 4427
>gb|AC093419.2| Homo sapiens chromosome 1 clone RP11-135A15, complete sequence Length = 163209 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 194 ttccatgtcagctcttctaa 213 |||||||||||||||||||| Sbjct: 38608 ttccatgtcagctcttctaa 38589
>gb|AC093561.2| Homo sapiens chromosome 1 clone RP11-401A10, complete sequence Length = 184330 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 194 ttccatgtcagctcttctaa 213 |||||||||||||||||||| Sbjct: 1288 ttccatgtcagctcttctaa 1307
>emb|BX824901.1|CNS0A4O4 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH81ZA03 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1413 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 aaaaatgtctgcatcatcca 176 |||||||||||||||||||| Sbjct: 578 aaaaatgtctgcatcatcca 559
>dbj|AB080727.1| Gallus gallus mRNA for RDM1, complete cds Length = 1433 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 145 aaaattaggcccaaaaatgt 164 |||||||||||||||||||| Sbjct: 998 aaaattaggcccaaaaatgt 1017 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,363,731 Number of Sequences: 3902068 Number of extensions: 3363731 Number of successful extensions: 58864 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 30 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 58828 Number of HSP's gapped (non-prelim): 36 length of query: 382 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 360 effective length of database: 17,147,199,772 effective search space: 6172991917920 effective search space used: 6172991917920 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)