>XIST_MOUSE (P27571) X inactive-specific transcript protein (Fragment)|
          Length = 298

 Score = 32.0 bits (71), Expect = 0.40
 Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
 Frame = -1

Query: 262 VCLDIANSIWSVLLCC-NKFIPQRLVGVHCLPEASVPSFFAGVCIFC*PCSVPFVLFMLH 86
           VCL +   ++ +L C  N  +   L    CL         + VC+FC  C +P  +F+LH
Sbjct: 59  VCLCLPCFVYLLLPCVSNSLLHLFLPSFACL-------LLSFVCLFCLQCVLPIPMFLLH 111

Query: 85  ALAVISCEGM 56
              V+SC  +
Sbjct: 112 ---VLSCRAL 118

>ODPA_SCHPO (Q10489) Pyruvate dehydrogenase E1 component alpha subunit,|
           mitochondrial precursor (EC 1.2.4.1) (PDHE1-A)
          Length = 409

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 16/60 (26%), Positives = 30/60 (50%)
 Frame = +1

Query: 115 SKVNKKYIPPQKKTVQRPLEGNGHQPIFEG*ICYSIEVPTKCCWRCRGKLIGMVESMIQL 294
           S+ N  ++P +     +P        +FEG   Y I+VP+      +G+L+G+ E M+ +
Sbjct: 35  SRANPAHVPEEH---DKPFPVKLDDSVFEG---YKIDVPSTEIEVTKGELLGLYEKMVTI 88

>AXUD1_MOUSE (P59054) Axin-1 up-regulated gene 1 protein (TGF-beta-induced|
           apoptosis protein 3) (TAIP-3)
          Length = 583

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
 Frame = -3

Query: 299 QCNCIILSTIPISL----PRHRQQHLVGTSML*QIYPSKIGWCPLPSRGLCTV 153
           Q +C + S  P S+    PR R  H+    +    +P   G+  +PSRG CT+
Sbjct: 59  QDSCGLQSFTPPSILKRAPRERPGHVAFNGITVYYFPRCQGFTSVPSRGGCTL 111

>MBD5_HUMAN (Q9P267) Methyl-CpG-binding domain protein 5 (Methyl-CpG-binding|
            protein MBD5)
          Length = 1494

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 15/32 (46%), Positives = 23/32 (71%)
 Frame = -3

Query: 293  NCIILSTIPISLPRHRQQHLVGTSML*QIYPS 198
            N  +LS++PISLP + QQHL+  ++L  + PS
Sbjct: 915  NPSLLSSLPISLPVN-QQHLLNQNLLNILQPS 945

>DYH1A_CHLRE (Q9SMH3) Dynein-1-alpha heavy chain, flagellar inner arm I1 complex|
            (1-alpha DHC) (Dynein-1, subspecies f)
          Length = 4625

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 20/57 (35%), Positives = 30/57 (52%)
 Frame = +2

Query: 113  RARSTKNTYPRKKRRYRGLWKAMDTNQSLRDKFVTA*KYRPNAVGDVEANLLEWSKV 283
            RA ++ N Y    RR++ LWK  D N S+ DKF    K R  +    E  L +++K+
Sbjct: 1105 RAITSVNKYAESWRRHQALWKT-DKN-SVLDKF----KARDPSAAQFEDKLSKYAKM 1155

>PLA2R_BOVIN (P49259) 180 kDa secretory phospholipase A2 receptor precursor|
            (PLA2-R)
          Length = 1463

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
 Frame = -1

Query: 289  VSYFRPFQ*VCLDIANSIWSVLLCCNK--FIPQRLVGVHCLPEASVPSFFAGVCIFC*PC 116
            V +F+P   V L I   +W +  C +K  FI +    +H + +         V     P 
Sbjct: 1346 VYHFKPHLCVALRIPEGVWQLSSCQDKKGFICKMEADIHTVKKHPGKGPSHSVI----PL 1401

Query: 115  SVPFVLFMLHALAVISCEGMYCLYRTSSMI 26
            +V   L ++ A++ +S    +C+Y+ S +I
Sbjct: 1402 TVALTLLVILAISTLS----FCMYKHSHII 1427


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,798,259
Number of Sequences: 219361
Number of extensions: 903352
Number of successful extensions: 2481
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2481
length of database: 80,573,946
effective HSP length: 81
effective length of database: 62,805,705
effective search space used: 1507336920
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)