ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl53b01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|BT009451.1| Triticum aestivum clone wlmk8.pk0022.c11:fis, ful... 113 3e-22
2gb|AC110525.10| Mus musculus chromosome 8, clone RP23-82N11, com... 42 1.1
3gb|AC158350.7| Mus musculus chromosome 8, clone RP24-250A3, comp... 42 1.1
4gb|AC092186.1|AC092186 Drosophila melanogaster, chromosome 2L, r... 42 1.1
5gb|AE003583.3| Drosophila melanogaster chromosome 2L, section 8 ... 42 1.1
6gb|AC004276.1|AC004276 Drosophila melanogaster DNA sequence (P1 ... 42 1.1
7gb|AC004500.1| Homo sapiens chromosome 5, P1 clone 1076B9 (LBNL ... 40 4.2
8ref|NM_005260.3| Homo sapiens growth differentiation factor 9 (G... 40 4.2
9emb|AL935259.1| Lactobacillus plantarum strain WCFS1 complete ge... 40 4.2
10emb|AL023874.1|DMC100G10 Drosophila melanogaster cosmid clone 10... 40 4.2
11emb|AL691491.11| Mouse DNA sequence from clone RP23-426J14 on ch... 40 4.2
12gb|BC096229.1| Homo sapiens growth differentiation factor 9, mRN... 40 4.2
13gb|BC096228.1| Homo sapiens growth differentiation factor 9, mRN... 40 4.2
14gb|BC096231.1| Homo sapiens growth differentiation factor 9, mRN... 40 4.2
15gb|BC096230.1| Homo sapiens growth differentiation factor 9, mRN... 40 4.2
16gb|AY118458.1| Drosophila melanogaster GH01006 full insert cDNA 40 4.2
17gb|AC104145.7| Drosophila melanogaster X BAC RP98-30B1 (Roswell ... 40 4.2
18ref|NM_206616.1| Drosophila melanogaster CG2658-RB, transcript v... 40 4.2
19ref|NM_130661.1| Drosophila melanogaster CG2658-RA, transcript v... 40 4.2
20gb|AC026794.5| Homo sapiens chromosome 5 clone CTD-2276B5, compl... 40 4.2
21gb|AC122281.2| Mus musculus chromosome 16 clone RP23-239I17, com... 40 4.2
22gb|AE003425.3| Drosophila melanogaster chromosome X, section 9 o... 40 4.2

>gb|BT009451.1| Triticum aestivum clone wlmk8.pk0022.c11:fis, full insert mRNA
            sequence
          Length = 1986

 Score =  113 bits (57), Expect = 3e-22
 Identities = 93/104 (89%), Gaps = 2/104 (1%)
 Strand = Plus / Minus

                                                                        
Query: 154  acggtacagaggcctctggaaggcaatggacaccaaccaatctttgagg--gataaattt 211
            |||||||||||||||||||||||||||| |||| |||||||| ||||||   |||||| |
Sbjct: 1846 acggtacagaggcctctggaaggcaatgcacacgaaccaatccttgaggaatataaatgt 1787

                                                        
Query: 212  gttacagcatagaagtaccgaccaaatgctgttggcgatgtcga 255
            ||||||  ||||||||||||||||||||||| ||| ||||||||
Sbjct: 1786 gttacaatatagaagtaccgaccaaatgctgctggtgatgtcga 1743



 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 100/120 (83%), Gaps = 1/120 (0%)
 Strand = Plus / Minus

                                                                        
Query: 14   tttgacaggattaatcatagatgatgttctgtacaaacaatacataccttcacatgaaat 73
            ||||||| ||||||||| | | |||||||  |||||| |||||||||||| ||| |||||
Sbjct: 1973 tttgacatgattaatcacacaagatgttcgatacaaataatacatacctttacaggaaat 1914

                                                                        
Query: 74   tactgctaa-agcatgtaacataaacaacacaaacggtacagagcaaggtcaacaaaaaa 132
            |||| |||| ||  |||| | ||||||||| |||| ||||||  || |||||||||||||
Sbjct: 1913 tactactaagagtgtgtagcttaaacaacagaaacagtacagtccatggtcaacaaaaaa 1854



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>gb|AC110525.10| Mus musculus chromosome 8, clone RP23-82N11, complete sequence
          Length = 153281

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 193   atctttgagggataaatttgt 213
             |||||||||||||||||||||
Sbjct: 37479 atctttgagggataaatttgt 37499



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>gb|AC158350.7| Mus musculus chromosome 8, clone RP24-250A3, complete sequence
          Length = 174965

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 193    atctttgagggataaatttgt 213
              |||||||||||||||||||||
Sbjct: 133080 atctttgagggataaatttgt 133100



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>gb|AC092186.1|AC092186 Drosophila melanogaster, chromosome 2L, region 22D-22E, BAC clone
             BACR22P10, complete sequence
          Length = 184650

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 86    atgtaacataaacaacacaaa 106
             |||||||||||||||||||||
Sbjct: 76579 atgtaacataaacaacacaaa 76559



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>gb|AE003583.3| Drosophila melanogaster chromosome 2L, section 8 of 83 of the complete
             sequence
          Length = 303641

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 86    atgtaacataaacaacacaaa 106
             |||||||||||||||||||||
Sbjct: 86788 atgtaacataaacaacacaaa 86768



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>gb|AC004276.1|AC004276 Drosophila melanogaster DNA sequence (P1 DS01020 (D139)), complete
             sequence
          Length = 86567

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 86    atgtaacataaacaacacaaa 106
             |||||||||||||||||||||
Sbjct: 22485 atgtaacataaacaacacaaa 22505



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>gb|AC004500.1| Homo sapiens chromosome 5, P1 clone 1076B9 (LBNL H14), complete
             sequence
          Length = 77538

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 28    tcatagatgatgttctgtac 47
             ||||||||||||||||||||
Sbjct: 42226 tcatagatgatgttctgtac 42207



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>ref|NM_005260.3| Homo sapiens growth differentiation factor 9 (GDF9), mRNA
          Length = 2020

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 28   tcatagatgatgttctgtac 47
            ||||||||||||||||||||
Sbjct: 1475 tcatagatgatgttctgtac 1456



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>emb|AL935259.1| Lactobacillus plantarum strain WCFS1 complete genome; segment 8/11
          Length = 254050

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 264   tattggaatggtcgaaagta 283
             ||||||||||||||||||||
Sbjct: 92223 tattggaatggtcgaaagta 92204



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>emb|AL023874.1|DMC100G10 Drosophila melanogaster cosmid clone 100G10
          Length = 21489

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 119 aggtcaacaaaaaatacata 138
           ||||||||||||||||||||
Sbjct: 806 aggtcaacaaaaaatacata 825



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>emb|AL691491.11| Mouse DNA sequence from clone RP23-426J14 on chromosome 4 Contains the
             5' end of the Pappa gene for pregnancy-associated plasma
             protein A and a Cpg island, complete sequence
          Length = 199017

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 30    atagatgatgttctgtacaaacaa 53
             |||||||||||||| |||||||||
Sbjct: 44434 atagatgatgttctctacaaacaa 44457



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>gb|BC096229.1| Homo sapiens growth differentiation factor 9, mRNA (cDNA clone
            MGC:116883 IMAGE:40005257), complete cds
          Length = 1365

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 28   tcatagatgatgttctgtac 47
            ||||||||||||||||||||
Sbjct: 1223 tcatagatgatgttctgtac 1204



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>gb|BC096228.1| Homo sapiens growth differentiation factor 9, mRNA (cDNA clone
            MGC:116882 IMAGE:40005256), complete cds
          Length = 1365

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 28   tcatagatgatgttctgtac 47
            ||||||||||||||||||||
Sbjct: 1223 tcatagatgatgttctgtac 1204



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>gb|BC096231.1| Homo sapiens growth differentiation factor 9, mRNA (cDNA clone
            MGC:116885 IMAGE:40005259), complete cds
          Length = 1365

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 28   tcatagatgatgttctgtac 47
            ||||||||||||||||||||
Sbjct: 1223 tcatagatgatgttctgtac 1204



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>gb|BC096230.1| Homo sapiens growth differentiation factor 9, mRNA (cDNA clone
            MGC:116884 IMAGE:40005258), complete cds
          Length = 1365

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 28   tcatagatgatgttctgtac 47
            ||||||||||||||||||||
Sbjct: 1223 tcatagatgatgttctgtac 1204



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>gb|AY118458.1| Drosophila melanogaster GH01006 full insert cDNA
          Length = 3105

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 119  aggtcaacaaaaaatacata 138
            ||||||||||||||||||||
Sbjct: 3062 aggtcaacaaaaaatacata 3043



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>gb|AC104145.7| Drosophila melanogaster X BAC RP98-30B1 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 161569

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 119   aggtcaacaaaaaatacata 138
             ||||||||||||||||||||
Sbjct: 34295 aggtcaacaaaaaatacata 34314



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>ref|NM_206616.1| Drosophila melanogaster CG2658-RB, transcript variant B (CG2658),
            mRNA
          Length = 3088

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 119  aggtcaacaaaaaatacata 138
            ||||||||||||||||||||
Sbjct: 3062 aggtcaacaaaaaatacata 3043



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>ref|NM_130661.1| Drosophila melanogaster CG2658-RA, transcript variant A (CG2658),
            mRNA
          Length = 3033

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 119  aggtcaacaaaaaatacata 138
            ||||||||||||||||||||
Sbjct: 3008 aggtcaacaaaaaatacata 2989



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>gb|AC026794.5| Homo sapiens chromosome 5 clone CTD-2276B5, complete sequence
          Length = 126910

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 28     tcatagatgatgttctgtac 47
              ||||||||||||||||||||
Sbjct: 104550 tcatagatgatgttctgtac 104569



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>gb|AC122281.2| Mus musculus chromosome 16 clone RP23-239I17, complete sequence
          Length = 204608

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 2     aaatgaaatgtttttgacag 21
             ||||||||||||||||||||
Sbjct: 83965 aaatgaaatgtttttgacag 83946



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>gb|AE003425.3| Drosophila melanogaster chromosome X, section 9 of 74 of the complete
             sequence
          Length = 309053

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 119   aggtcaacaaaaaatacata 138
             ||||||||||||||||||||
Sbjct: 60899 aggtcaacaaaaaatacata 60918


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,249,762
Number of Sequences: 3902068
Number of extensions: 3249762
Number of successful extensions: 65049
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 65013
Number of HSP's gapped (non-prelim): 34
length of query: 319
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 297
effective length of database: 17,147,199,772
effective search space: 5092718332284
effective search space used: 5092718332284
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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