Clone Name | rbastl53b01 |
---|---|
Clone Library Name | barley_pub |
>gb|BT009451.1| Triticum aestivum clone wlmk8.pk0022.c11:fis, full insert mRNA sequence Length = 1986 Score = 113 bits (57), Expect = 3e-22 Identities = 93/104 (89%), Gaps = 2/104 (1%) Strand = Plus / Minus Query: 154 acggtacagaggcctctggaaggcaatggacaccaaccaatctttgagg--gataaattt 211 |||||||||||||||||||||||||||| |||| |||||||| |||||| |||||| | Sbjct: 1846 acggtacagaggcctctggaaggcaatgcacacgaaccaatccttgaggaatataaatgt 1787 Query: 212 gttacagcatagaagtaccgaccaaatgctgttggcgatgtcga 255 |||||| ||||||||||||||||||||||| ||| |||||||| Sbjct: 1786 gttacaatatagaagtaccgaccaaatgctgctggtgatgtcga 1743 Score = 71.9 bits (36), Expect = 1e-09 Identities = 100/120 (83%), Gaps = 1/120 (0%) Strand = Plus / Minus Query: 14 tttgacaggattaatcatagatgatgttctgtacaaacaatacataccttcacatgaaat 73 ||||||| ||||||||| | | ||||||| |||||| |||||||||||| ||| ||||| Sbjct: 1973 tttgacatgattaatcacacaagatgttcgatacaaataatacatacctttacaggaaat 1914 Query: 74 tactgctaa-agcatgtaacataaacaacacaaacggtacagagcaaggtcaacaaaaaa 132 |||| |||| || |||| | ||||||||| |||| |||||| || ||||||||||||| Sbjct: 1913 tactactaagagtgtgtagcttaaacaacagaaacagtacagtccatggtcaacaaaaaa 1854
>gb|AC110525.10| Mus musculus chromosome 8, clone RP23-82N11, complete sequence Length = 153281 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 193 atctttgagggataaatttgt 213 ||||||||||||||||||||| Sbjct: 37479 atctttgagggataaatttgt 37499
>gb|AC158350.7| Mus musculus chromosome 8, clone RP24-250A3, complete sequence Length = 174965 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 193 atctttgagggataaatttgt 213 ||||||||||||||||||||| Sbjct: 133080 atctttgagggataaatttgt 133100
>gb|AC092186.1|AC092186 Drosophila melanogaster, chromosome 2L, region 22D-22E, BAC clone BACR22P10, complete sequence Length = 184650 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 86 atgtaacataaacaacacaaa 106 ||||||||||||||||||||| Sbjct: 76579 atgtaacataaacaacacaaa 76559
>gb|AE003583.3| Drosophila melanogaster chromosome 2L, section 8 of 83 of the complete sequence Length = 303641 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 86 atgtaacataaacaacacaaa 106 ||||||||||||||||||||| Sbjct: 86788 atgtaacataaacaacacaaa 86768
>gb|AC004276.1|AC004276 Drosophila melanogaster DNA sequence (P1 DS01020 (D139)), complete sequence Length = 86567 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 86 atgtaacataaacaacacaaa 106 ||||||||||||||||||||| Sbjct: 22485 atgtaacataaacaacacaaa 22505
>gb|AC004500.1| Homo sapiens chromosome 5, P1 clone 1076B9 (LBNL H14), complete sequence Length = 77538 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 tcatagatgatgttctgtac 47 |||||||||||||||||||| Sbjct: 42226 tcatagatgatgttctgtac 42207
>ref|NM_005260.3| Homo sapiens growth differentiation factor 9 (GDF9), mRNA Length = 2020 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 tcatagatgatgttctgtac 47 |||||||||||||||||||| Sbjct: 1475 tcatagatgatgttctgtac 1456
>emb|AL935259.1| Lactobacillus plantarum strain WCFS1 complete genome; segment 8/11 Length = 254050 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 264 tattggaatggtcgaaagta 283 |||||||||||||||||||| Sbjct: 92223 tattggaatggtcgaaagta 92204
>emb|AL023874.1|DMC100G10 Drosophila melanogaster cosmid clone 100G10 Length = 21489 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 119 aggtcaacaaaaaatacata 138 |||||||||||||||||||| Sbjct: 806 aggtcaacaaaaaatacata 825
>emb|AL691491.11| Mouse DNA sequence from clone RP23-426J14 on chromosome 4 Contains the 5' end of the Pappa gene for pregnancy-associated plasma protein A and a Cpg island, complete sequence Length = 199017 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 30 atagatgatgttctgtacaaacaa 53 |||||||||||||| ||||||||| Sbjct: 44434 atagatgatgttctctacaaacaa 44457
>gb|BC096229.1| Homo sapiens growth differentiation factor 9, mRNA (cDNA clone MGC:116883 IMAGE:40005257), complete cds Length = 1365 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 tcatagatgatgttctgtac 47 |||||||||||||||||||| Sbjct: 1223 tcatagatgatgttctgtac 1204
>gb|BC096228.1| Homo sapiens growth differentiation factor 9, mRNA (cDNA clone MGC:116882 IMAGE:40005256), complete cds Length = 1365 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 tcatagatgatgttctgtac 47 |||||||||||||||||||| Sbjct: 1223 tcatagatgatgttctgtac 1204
>gb|BC096231.1| Homo sapiens growth differentiation factor 9, mRNA (cDNA clone MGC:116885 IMAGE:40005259), complete cds Length = 1365 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 tcatagatgatgttctgtac 47 |||||||||||||||||||| Sbjct: 1223 tcatagatgatgttctgtac 1204
>gb|BC096230.1| Homo sapiens growth differentiation factor 9, mRNA (cDNA clone MGC:116884 IMAGE:40005258), complete cds Length = 1365 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 tcatagatgatgttctgtac 47 |||||||||||||||||||| Sbjct: 1223 tcatagatgatgttctgtac 1204
>gb|AY118458.1| Drosophila melanogaster GH01006 full insert cDNA Length = 3105 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 119 aggtcaacaaaaaatacata 138 |||||||||||||||||||| Sbjct: 3062 aggtcaacaaaaaatacata 3043
>gb|AC104145.7| Drosophila melanogaster X BAC RP98-30B1 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 161569 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 119 aggtcaacaaaaaatacata 138 |||||||||||||||||||| Sbjct: 34295 aggtcaacaaaaaatacata 34314
>ref|NM_206616.1| Drosophila melanogaster CG2658-RB, transcript variant B (CG2658), mRNA Length = 3088 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 119 aggtcaacaaaaaatacata 138 |||||||||||||||||||| Sbjct: 3062 aggtcaacaaaaaatacata 3043
>ref|NM_130661.1| Drosophila melanogaster CG2658-RA, transcript variant A (CG2658), mRNA Length = 3033 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 119 aggtcaacaaaaaatacata 138 |||||||||||||||||||| Sbjct: 3008 aggtcaacaaaaaatacata 2989
>gb|AC026794.5| Homo sapiens chromosome 5 clone CTD-2276B5, complete sequence Length = 126910 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 28 tcatagatgatgttctgtac 47 |||||||||||||||||||| Sbjct: 104550 tcatagatgatgttctgtac 104569
>gb|AC122281.2| Mus musculus chromosome 16 clone RP23-239I17, complete sequence Length = 204608 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 aaatgaaatgtttttgacag 21 |||||||||||||||||||| Sbjct: 83965 aaatgaaatgtttttgacag 83946
>gb|AE003425.3| Drosophila melanogaster chromosome X, section 9 of 74 of the complete sequence Length = 309053 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 119 aggtcaacaaaaaatacata 138 |||||||||||||||||||| Sbjct: 60899 aggtcaacaaaaaatacata 60918 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,249,762 Number of Sequences: 3902068 Number of extensions: 3249762 Number of successful extensions: 65049 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 22 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 65013 Number of HSP's gapped (non-prelim): 34 length of query: 319 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 297 effective length of database: 17,147,199,772 effective search space: 5092718332284 effective search space used: 5092718332284 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)