ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl53a12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1COX2_TRYCR (P98023) Cytochrome c oxidase subunit 2 (EC 1.9.3.1) ... 31 0.88
2UL34_HCMVA (P16812) Hypothetical protein UL34 30 2.0
3GR10A_DROME (P58950) Putative gustatory receptor 10a 30 2.0
4ATG9_ASHGO (Q75A48) Autophagy-related protein 9 29 3.3
5CYB_TRYBB (P00164) Cytochrome b 28 7.4
6RFBS_SALTI (P14168) Paratose synthase (EC 1.-.-.-) 28 7.4
7VGLM_INSV (Q01260) Envelope polyprotein precursor (M polyprotein... 28 7.4
8SO2A1_RAT (Q00910) Solute carrier organic anion transporter fami... 27 9.7
9SO2A1_MOUSE (Q9EPT5) Solute carrier organic anion transporter fa... 27 9.7
10KBAA_BACSU (P16449) KinB signaling pathway activation protein 27 9.7
11YKD0_YEAST (P36099) Hypothetical 23.0 kDa protein in IXR1-TFA1 i... 27 9.7

>COX2_TRYCR (P98023) Cytochrome c oxidase subunit 2 (EC 1.9.3.1) (Cytochrome c|
           oxidase polypeptide II)
          Length = 210

 Score = 30.8 bits (68), Expect = 0.88
 Identities = 12/50 (24%), Positives = 27/50 (54%)
 Frame = -2

Query: 151 LCSLCIIFVM*LCYICIFLMELCNGYMLWNYVMDMCYETMLYIYGSLFIV 2
           +C +C+   + L    +F+ ++ N Y  W++V     +T  ++ G +FI+
Sbjct: 23  VCFVCVWICVLLLSTVLFVTKINNIYCTWDFVSSKFVDTYWFVIGVMFIM 72



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>UL34_HCMVA (P16812) Hypothetical protein UL34|
          Length = 407

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +3

Query: 195 CPYRSPMNIQVGTLVDLKDKENHQAYCH--LGLVHVKRHPYS 314
           C  +S + ++V  LV L   E H+  CH  +GL+H   H ++
Sbjct: 163 CGEKSALGVEVHQLVALLPHERHRELCHVLIGLLHQTPHMWA 204



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>GR10A_DROME (P58950) Putative gustatory receptor 10a|
          Length = 408

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
 Frame = -3

Query: 138 VSSLLCNYAIYAYFLWNYA---MDICY 67
           VS +  ++AIYA+ LWNY     D CY
Sbjct: 176 VSQVRVHFAIYAFVLWNYTENMADYCY 202



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>ATG9_ASHGO (Q75A48) Autophagy-related protein 9|
          Length = 897

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -2

Query: 154 LLCSLCIIFVM*LCYICIFLMELCNGYMLWNYVMDMCYETML 29
           LL  L I+F+      CI   +L NG+   +  +D CYET +
Sbjct: 268 LLTLLFIVFISTYMSHCIDYSKLPNGHKFSDVRVDQCYETQI 309



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>CYB_TRYBB (P00164) Cytochrome b|
          Length = 363

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 11/50 (22%), Positives = 30/50 (60%), Gaps = 6/50 (12%)
 Frame = -2

Query: 154 LLCSLCIIFVM*LCYIC------IFLMELCNGYMLWNYVMDMCYETMLYI 23
           ++C +C+ ++   C+IC      +FL +   G+++ +  + +C+ ++LY+
Sbjct: 36  IICGVCLAWLFFSCFICSNWYFVLFLWDFDLGFVIRS--VHICFTSLLYL 83



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>RFBS_SALTI (P14168) Paratose synthase (EC 1.-.-.-)|
          Length = 279

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 13/34 (38%), Positives = 24/34 (70%)
 Frame = -3

Query: 201 MDMKTLDVVANLT*DACFVHCVSSLLCNYAIYAY 100
           M ++ L+ +++L  DA F++C +SL  N ++YAY
Sbjct: 86  MPIRVLESISSL--DAVFINCGTSLPPNTSLYAY 117



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>VGLM_INSV (Q01260) Envelope polyprotein precursor (M polyprotein) [Contains:|
            Glycoprotein G1; Glycoprotein G2]
          Length = 1110

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -2

Query: 169  SYIGCLLCSLCIIFVM*LCYICIFLMELCNGYM 71
            S+   +   L I+FV  L Y+C  +  +C GY+
Sbjct: 1038 SFFDTVRVVLLILFVFALAYLCSIVATMCRGYV 1070



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>SO2A1_RAT (Q00910) Solute carrier organic anion transporter family member 2A1|
           (Solute carrier family 21 member 2) (Prostaglandin
           transporter) (PGT) (Matrin F/G 1)
          Length = 643

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 11/50 (22%)
 Frame = -2

Query: 331 LIRPWIEYGCLFTCT------RPKWQ*AWWFSLSLRS-----TKVPTWMF 215
           ++R +++YG + T T       P+W  AWW  L + S     T +P + F
Sbjct: 229 MLRIFVDYGRVDTATVNLSPGDPRWIGAWWLGLLISSGFLIVTSLPFFFF 278



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>SO2A1_MOUSE (Q9EPT5) Solute carrier organic anion transporter family member 2A1|
           (Solute carrier family 21 member 2) (Prostaglandin
           transporter) (PGT)
          Length = 643

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 11/50 (22%)
 Frame = -2

Query: 331 LIRPWIEYGCLFTCT------RPKWQ*AWWFSLSLRS-----TKVPTWMF 215
           ++R +++YG + T T       P+W  AWW  L + S     T +P + F
Sbjct: 229 MLRIFVDYGRVDTATVNLSPGDPRWIGAWWLGLLISSGFLIVTSLPFFFF 278



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>KBAA_BACSU (P16449) KinB signaling pathway activation protein|
          Length = 198

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 18/81 (22%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
 Frame = -1

Query: 278 VAISLVVLLIFEID*GSHLDVHWTTVWT*RHLM*WQILHRMLALFIVYHLCYVTMLYMHI 99
           + + ++  +I ++     L VH   +   R    W +L     LF+ + L YV  L+   
Sbjct: 53  IGVGMIFSVISQMGFFVFLTVHRFALEILRSSSLWNLLQLFFILFVAFDLMYVRFLFFGE 112

Query: 98  SYGTM---QWIYVMELCYGYV 45
           S  ++    W+ V  L +G +
Sbjct: 113 SGESLAGYAWLPVFLLIFGVI 133



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>YKD0_YEAST (P36099) Hypothetical 23.0 kDa protein in IXR1-TFA1 intergenic|
           region
          Length = 201

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 153 CFVHCVSSLLCNYAIYAYFLWNYAM 79
           CF +C+  LL  Y  Y Y+ + Y M
Sbjct: 11  CFYYCIIVLLLYYYYYYYYYYYYGM 35


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,799,573
Number of Sequences: 219361
Number of extensions: 1070148
Number of successful extensions: 2478
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2476
length of database: 80,573,946
effective HSP length: 87
effective length of database: 61,489,539
effective search space used: 1475748936
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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