ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl53a11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK067479.1| Oryza sativa (japonica cultivar-group) cDNA clon... 224 2e-55
2dbj|AK061989.1| Oryza sativa (japonica cultivar-group) cDNA clon... 224 2e-55
3gb|AY106585.1| Zea mays PCO110346 mRNA sequence 184 1e-43
4gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 151 2e-33
5dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 151 2e-33
6gb|AC134234.3| Oryza sativa (japonica cultivar-group) chromosome... 151 2e-33
7gb|AC090677.13| Homo sapiens 12 BAC RP11-637N6 (Roswell Park Can... 44 0.31
8gb|AY280500.2| Sandersonia aurantiaca beta-galactosidase (GAL3) ... 44 0.31
9gb|AC114826.6| Mus musculus BAC clone RP24-156O12 from chromosom... 42 1.2
10emb|BX647681.1|HSM807827 Homo sapiens genomic DNA; cDNA DKFZp686... 42 1.2
11gb|AC129334.3| Mus musculus BAC clone RP23-108P9 from chromosome... 42 1.2
12gb|AC007883.3| Homo sapiens BAC clone RP11-508L23 from 2, comple... 42 1.2
13gb|AC064868.5| Homo sapiens BAC clone RP11-473E10 from 2, comple... 42 1.2
14emb|AL844198.7| Mouse DNA sequence from clone RP23-438P13 on chr... 42 1.2
15gb|AC163437.16| Mus musculus chromosome 5, clone RP23-119I18, co... 42 1.2
16ref|XM_415886.1| PREDICTED: Gallus gallus similar to KIAA1287 pr... 40 4.9
17ref|NM_001030722.1| Gallus gallus integrator complex subunit 2 (... 40 4.9
18ref|XM_546554.2| PREDICTED: Canis familiaris similar to zinc fin... 40 4.9
19ref|XM_850556.1| PREDICTED: Canis familiaris similar to zinc fin... 40 4.9
20emb|X82464.1|MSLEGA2 M.salicifolia mRNA for legumin precursor (A2) 40 4.9
21emb|AJ719990.1| Gallus gallus mRNA for hypothetical protein, clo... 40 4.9
22emb|CR522900.1| Gallus gallus finished cDNA, clone ChEST396a11 40 4.9
23gb|AC157791.6| Mus musculus chromosome 3, clone RP24-176D22, com... 40 4.9
24gb|AC087330.6| Mus Musculus Strain C57BL6/J chromosome 5 BAC, RP... 40 4.9
25emb|AL669973.10| Mouse DNA sequence from clone RP23-256C17 on ch... 40 4.9 
>dbj|AK067479.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013107M10, full
            insert sequence
          Length = 3250

 Score =  224 bits (113), Expect = 2e-55
 Identities = 203/233 (87%)
 Strand = Plus / Minus

                                                                        
Query: 132  aaacatgtcatgagcatgcagcttcgaccacaagactttttgtgactcctctgcatggat 191
            |||| ||||| |||||||||||||| ||||| |||||||||||||| || ||||||||||
Sbjct: 2886 aaacctgtcaggagcatgcagcttccaccactagactttttgtgaccccactgcatggat 2827

                                                                        
Query: 192  ctccgaagttctttgctgacaccggcacactgcaactgctcaccccgacgcatgcctcct 251
            |||| ||||| || | |||||| || ||||||||| || |||  || || || ||||| |
Sbjct: 2826 ctccaaagttattcgatgacactggaacactgcaattggtcattccaacacaggcctctt 2767

                                                                        
Query: 252  gagcgactgccagagcctgagagctgctgcattcgccatggctgtagctcccataggtgc 311
            || | ||||| ||||||||||||||||||||||| |||||| ||||| ||||| ||||||
Sbjct: 2766 gaacaactgcaagagcctgagagctgctgcattcaccatggttgtagttcccacaggtgc 2707

                                                                 
Query: 312  cactcggtgtcccgaagcttgcaaacttgatactgctgatgacctgaccttct 364
            ||||||||||||| |||||||||||||||||  ||||||||||||||||||||
Sbjct: 2706 cactcggtgtcccaaagcttgcaaacttgatgttgctgatgacctgaccttct 2654
to top
>dbj|AK061989.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-043-B09, full
            insert sequence
          Length = 1742

 Score =  224 bits (113), Expect = 2e-55
 Identities = 203/233 (87%)
 Strand = Plus / Minus

                                                                        
Query: 132  aaacatgtcatgagcatgcagcttcgaccacaagactttttgtgactcctctgcatggat 191
            |||| ||||| |||||||||||||| ||||| |||||||||||||| || ||||||||||
Sbjct: 1445 aaacctgtcaggagcatgcagcttccaccactagactttttgtgaccccactgcatggat 1386

                                                                        
Query: 192  ctccgaagttctttgctgacaccggcacactgcaactgctcaccccgacgcatgcctcct 251
            |||| ||||| || | |||||| || ||||||||| || |||  || || || ||||| |
Sbjct: 1385 ctccaaagttattcgatgacactggaacactgcaattggtcattccaacacaggcctctt 1326

                                                                        
Query: 252  gagcgactgccagagcctgagagctgctgcattcgccatggctgtagctcccataggtgc 311
            || | ||||| ||||||||||||||||||||||| |||||| ||||| ||||| ||||||
Sbjct: 1325 gaacaactgcaagagcctgagagctgctgcattcaccatggttgtagttcccacaggtgc 1266

                                                                 
Query: 312  cactcggtgtcccgaagcttgcaaacttgatactgctgatgacctgaccttct 364
            ||||||||||||| |||||||||||||||||  ||||||||||||||||||||
Sbjct: 1265 cactcggtgtcccaaagcttgcaaacttgatgttgctgatgacctgaccttct 1213
to top
>gb|AY106585.1| Zea mays PCO110346 mRNA sequence
          Length = 1036

 Score =  184 bits (93), Expect = 1e-43
 Identities = 198/233 (84%)
 Strand = Plus / Minus

                                                                       
Query: 134 acatgtcatgagcatgcagcttcgaccacaagactttttgtgactcctctgcatggatct 193
           |||||||| |||||||||||||| ||  |||| ||||||||||| ||| | ||||||| |
Sbjct: 792 acatgtcacgagcatgcagcttcaactgcaaggctttttgtgacccctgtacatggattt 733

                                                                       
Query: 194 ccgaagttctttgctgacaccggcacactgcaactgctcaccccgacgcatgcctcctga 253
           || || |  || |  ||||| ||||| ||||| |||||||| |||| ||| |||||||||
Sbjct: 732 ccaaaataattcgacgacactggcacgctgcagctgctcactccgatgcaagcctcctga 673

                                                                       
Query: 254 gcgactgccagagcctgagagctgctgcattcgccatggctgtagctcccataggtgcca 313
            | | ||  |||||||||| ||||||||||||||||||||||||||| ||| | ||||||
Sbjct: 672 acaattgagagagcctgagtgctgctgcattcgccatggctgtagcttccacatgtgcca 613

                                                                
Query: 314 ctcggtgtcccgaagcttgcaaacttgatactgctgatgacctgaccttcttt 366
           ||||||||||| ||||||||||||||||  |||||||||||||| ||||||||
Sbjct: 612 ctcggtgtcccaaagcttgcaaacttgacgctgctgatgacctggccttcttt 560
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  151 bits (76), Expect = 2e-33
 Identities = 100/108 (92%)
 Strand = Plus / Plus

                                                                           
Query: 257     actgccagagcctgagagctgctgcattcgccatggctgtagctcccataggtgccactc 316
               ||||| ||||||||||||||||||||||| |||||| ||||| ||||| |||||||||||
Sbjct: 8167572 actgcaagagcctgagagctgctgcattcaccatggttgtagttcccacaggtgccactc 8167631

                                                               
Query: 317     ggtgtcccgaagcttgcaaacttgatactgctgatgacctgaccttct 364
               |||||||| |||||||||||||||||  ||||||||||||||||||||
Sbjct: 8167632 ggtgtcccaaagcttgcaaacttgatgttgctgatgacctgaccttct 8167679



 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 83/95 (87%)
 Strand = Plus / Plus

                                                                           
Query: 132     aaacatgtcatgagcatgcagcttcgaccacaagactttttgtgactcctctgcatggat 191
               |||| ||||| |||||||||||||| ||||| |||||||||||||| || ||||||||||
Sbjct: 8167369 aaacctgtcaggagcatgcagcttccaccactagactttttgtgaccccactgcatggat 8167428

                                                  
Query: 192     ctccgaagttctttgctgacaccggcacactgcaa 226
               |||| ||||| || | |||||| || |||||||||
Sbjct: 8167429 ctccaaagttattcgatgacactggaacactgcaa 8167463
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  151 bits (76), Expect = 2e-33
 Identities = 100/108 (92%)
 Strand = Plus / Plus

                                                                           
Query: 257     actgccagagcctgagagctgctgcattcgccatggctgtagctcccataggtgccactc 316
               ||||| ||||||||||||||||||||||| |||||| ||||| ||||| |||||||||||
Sbjct: 8165407 actgcaagagcctgagagctgctgcattcaccatggttgtagttcccacaggtgccactc 8165466

                                                               
Query: 317     ggtgtcccgaagcttgcaaacttgatactgctgatgacctgaccttct 364
               |||||||| |||||||||||||||||  ||||||||||||||||||||
Sbjct: 8165467 ggtgtcccaaagcttgcaaacttgatgttgctgatgacctgaccttct 8165514



 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 83/95 (87%)
 Strand = Plus / Plus

                                                                           
Query: 132     aaacatgtcatgagcatgcagcttcgaccacaagactttttgtgactcctctgcatggat 191
               |||| ||||| |||||||||||||| ||||| |||||||||||||| || ||||||||||
Sbjct: 8165204 aaacctgtcaggagcatgcagcttccaccactagactttttgtgaccccactgcatggat 8165263

                                                  
Query: 192     ctccgaagttctttgctgacaccggcacactgcaa 226
               |||| ||||| || | |||||| || |||||||||
Sbjct: 8165264 ctccaaagttattcgatgacactggaacactgcaa 8165298
to top
>gb|AC134234.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0019J12, complete sequence
          Length = 195583

 Score =  151 bits (76), Expect = 2e-33
 Identities = 100/108 (92%)
 Strand = Plus / Plus

                                                                         
Query: 257   actgccagagcctgagagctgctgcattcgccatggctgtagctcccataggtgccactc 316
             ||||| ||||||||||||||||||||||| |||||| ||||| ||||| |||||||||||
Sbjct: 99002 actgcaagagcctgagagctgctgcattcaccatggttgtagttcccacaggtgccactc 99061

                                                             
Query: 317   ggtgtcccgaagcttgcaaacttgatactgctgatgacctgaccttct 364
             |||||||| |||||||||||||||||  ||||||||||||||||||||
Sbjct: 99062 ggtgtcccaaagcttgcaaacttgatgttgctgatgacctgaccttct 99109



 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 83/95 (87%)
 Strand = Plus / Plus

                                                                         
Query: 132   aaacatgtcatgagcatgcagcttcgaccacaagactttttgtgactcctctgcatggat 191
             |||| ||||| |||||||||||||| ||||| |||||||||||||| || ||||||||||
Sbjct: 98799 aaacctgtcaggagcatgcagcttccaccactagactttttgtgaccccactgcatggat 98858

                                                
Query: 192   ctccgaagttctttgctgacaccggcacactgcaa 226
             |||| ||||| || | |||||| || |||||||||
Sbjct: 98859 ctccaaagttattcgatgacactggaacactgcaa 98893
to top
>gb|AC090677.13| Homo sapiens 12 BAC RP11-637N6 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 60429

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 7    atagattttggaatattttattccat 32
            ||||||||||||||||| ||||||||
Sbjct: 5118 atagattttggaatattatattccat 5143
to top
>gb|AY280500.2| Sandersonia aurantiaca beta-galactosidase (GAL3) mRNA, partial cds
          Length = 2618

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 46/54 (85%)
 Strand = Plus / Minus

                                                                  
Query: 139  tcatgagcatgcagcttcgaccacaagactttttgtgactcctctgcatggatc 192
            |||||||||||||||||| ||  |||| || ||  | |||||||||||||||||
Sbjct: 2457 tcatgagcatgcagcttcaactgcaaggctcttgataactcctctgcatggatc 2404
to top
>gb|AC114826.6| Mus musculus BAC clone RP24-156O12 from chromosome 5, complete sequence
          Length = 179886

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 247   ctcctgagcgactgccagagcctga 271
             |||||||| ||||||||||||||||
Sbjct: 25622 ctcctgagagactgccagagcctga 25646
to top
>emb|BX647681.1|HSM807827 Homo sapiens genomic DNA; cDNA DKFZp686J16112 (from clone
            DKFZp686J16112)
          Length = 5477

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 345  tgctgatgacctgaccttctt 365
            |||||||||||||||||||||
Sbjct: 1779 tgctgatgacctgaccttctt 1799
to top
>gb|AC129334.3| Mus musculus BAC clone RP23-108P9 from chromosome 8, complete sequence
          Length = 207032

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 247    ctcctgagcgactgccagagcctga 271
              |||||||| ||||||||||||||||
Sbjct: 145656 ctcctgagagactgccagagcctga 145632
to top
>gb|AC007883.3| Homo sapiens BAC clone RP11-508L23 from 2, complete sequence
          Length = 113189

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 345   tgctgatgacctgaccttctt 365
             |||||||||||||||||||||
Sbjct: 99775 tgctgatgacctgaccttctt 99755
to top
>gb|AC064868.5| Homo sapiens BAC clone RP11-473E10 from 2, complete sequence
          Length = 178181

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 6     aatagattttggaatatttta 26
             |||||||||||||||||||||
Sbjct: 16846 aatagattttggaatatttta 16866
to top
>emb|AL844198.7| Mouse DNA sequence from clone RP23-438P13 on chromosome 4, complete
             sequence
          Length = 176049

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 247   ctcctgagcgactgccagagcctga 271
             |||||||| ||||||||||||||||
Sbjct: 32189 ctcctgagagactgccagagcctga 32165
to top
>gb|AC163437.16| Mus musculus chromosome 5, clone RP23-119I18, complete sequence
          Length = 190996

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 247   ctcctgagcgactgccagagcctga 271
             |||||||| ||||||||||||||||
Sbjct: 81265 ctcctgagagactgccagagcctga 81241
to top
>ref|XM_415886.1| PREDICTED: Gallus gallus similar to KIAA1287 protein (LOC417641),
           mRNA
          Length = 1965

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 14  ttggaatattttattccatc 33
           ||||||||||||||||||||
Sbjct: 920 ttggaatattttattccatc 901
to top
>ref|NM_001030722.1| Gallus gallus integrator complex subunit 2 (INTS2), mRNA
          Length = 5076

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 14   ttggaatattttattccatc 33
            ||||||||||||||||||||
Sbjct: 4025 ttggaatattttattccatc 4006
to top
>ref|XM_546554.2| PREDICTED: Canis familiaris similar to zinc finger, ZZ-type with EF
            hand domain 1, transcript variant 1 (LOC489436), mRNA
          Length = 8892

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 266  gcctgagagctgctgcattc 285
            ||||||||||||||||||||
Sbjct: 6956 gcctgagagctgctgcattc 6937
to top
>ref|XM_850556.1| PREDICTED: Canis familiaris similar to zinc finger, ZZ-type with EF
            hand domain 1, transcript variant 2 (LOC489436), mRNA
          Length = 8682

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 266  gcctgagagctgctgcattc 285
            ||||||||||||||||||||
Sbjct: 6845 gcctgagagctgctgcattc 6826
to top
>emb|X82464.1|MSLEGA2 M.salicifolia mRNA for legumin precursor (A2)
          Length = 1684

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 210 acaccggcacactgcaactgctca 233
           ||||||||||||| ||||||||||
Sbjct: 267 acaccggcacactccaactgctca 244
to top
>emb|AJ719990.1| Gallus gallus mRNA for hypothetical protein, clone 9c3
          Length = 5076

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 14   ttggaatattttattccatc 33
            ||||||||||||||||||||
Sbjct: 4025 ttggaatattttattccatc 4006
to top
>emb|CR522900.1| Gallus gallus finished cDNA, clone ChEST396a11
          Length = 999

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 14  ttggaatattttattccatc 33
           ||||||||||||||||||||
Sbjct: 406 ttggaatattttattccatc 387
to top
>gb|AC157791.6| Mus musculus chromosome 3, clone RP24-176D22, complete sequence
          Length = 179897

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 8      tagattttggaatattttat 27
              ||||||||||||||||||||
Sbjct: 120677 tagattttggaatattttat 120696
to top
>gb|AC087330.6| Mus Musculus Strain C57BL6/J chromosome 5 BAC, RP23-3M10, complete
              sequence
          Length = 206093

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 55     ttattgtttcttgcctgtttgtct 78
              |||||||| |||||||||||||||
Sbjct: 133425 ttattgttacttgcctgtttgtct 133448
to top
>emb|AL669973.10| Mouse DNA sequence from clone RP23-256C17 on chromosome X, complete
              sequence
          Length = 179173

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 248    tcctgagcgactgccagagcctga 271
              ||||||| ||||||||||||||||
Sbjct: 133685 tcctgagagactgccagagcctga 133708


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,677,049
Number of Sequences: 3902068
Number of extensions: 3677049
Number of successful extensions: 77633
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 77579
Number of HSP's gapped (non-prelim): 53
length of query: 367
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 345
effective length of database: 17,147,199,772
effective search space: 5915783921340
effective search space used: 5915783921340
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top