ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl53a06 |
|---|---|
| Clone Library Name | barley_pub |
>K0143_HUMAN (Q14156) Protein KIAA0143 (Fragment)| Length = 885 Score = 32.0 bits (71), Expect = 0.59 Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 3/64 (4%) Frame = -1 Query: 405 MCVKPKGAQRPTISEVLKEIQDAIAIEVQREAPQVQQLMSKRSMGSVSINT---DNSADL 235 + + KG+ PT+ EV + + + V+ EA +Q S+GSV++NT DN + Sbjct: 386 VAIAAKGSIGPTVLEVFNTLLKHLRLSVEFEANDLQ----GGSVGSVNLNTSSKDNDEKI 441 Query: 234 EQNA 223 QNA Sbjct: 442 VQNA 445
>LYS1_ASHGO (Q75BV4) Saccharopine dehydrogenase [NAD+, L-lysine-forming] (EC| 1.5.1.7) (Lysine--2-oxoglutarate reductase) (SDH) Length = 372 Score = 29.6 bits (65), Expect = 2.9 Identities = 13/35 (37%), Positives = 18/35 (51%) Frame = -2 Query: 278 PWVLSQSTRTTAPIWSRTRRLMKCSCGRASGRTRI 174 P +L R TAP+W R + L + C R S R+ Sbjct: 338 PSLLQLPERDTAPVWLRAKELFQQHCERLSKEARL 372
>SYFA_LISMO (Q8Y7Q2) Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase alpha chain) (PheRS) Length = 350 Score = 29.3 bits (64), Expect = 3.8 Identities = 23/95 (24%), Positives = 35/95 (36%), Gaps = 3/95 (3%) Frame = +2 Query: 98 ITRKQKD*LTHEHLLLLAYMKSVSNESWFYLRPGRMSISSNDAFCSKSALL---SVLIET 268 + R+ D TH H V F G +++ + F + + S T Sbjct: 197 VYRRDNDDATHSHQFTQIEGLVVGENITFADLKGTLTVLAKTMFGEEREIRLRPSFFPFT 256 Query: 269 EPMDLLDMSCWTWGASRCTSMAMASWISLSTSEMV 373 EP +D+SC+ G C WI + S MV Sbjct: 257 EPSVEMDISCFKCGGKGCRVCKGTGWIEILGSGMV 291
>SYFA_LISMF (Q720K8) Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase alpha chain) (PheRS) Length = 350 Score = 29.3 bits (64), Expect = 3.8 Identities = 23/95 (24%), Positives = 35/95 (36%), Gaps = 3/95 (3%) Frame = +2 Query: 98 ITRKQKD*LTHEHLLLLAYMKSVSNESWFYLRPGRMSISSNDAFCSKSALL---SVLIET 268 + R+ D TH H V F G +++ + F + + S T Sbjct: 197 VYRRDNDDATHSHQFTQIEGLVVGENITFADLKGTLTVLAKTMFGEEREIRLRPSFFPFT 256 Query: 269 EPMDLLDMSCWTWGASRCTSMAMASWISLSTSEMV 373 EP +D+SC+ G C WI + S MV Sbjct: 257 EPSVEMDISCFKCGGKGCRVCKGTGWIEILGSGMV 291
>SYFA_LISIN (Q92CI7) Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase alpha chain) (PheRS) Length = 350 Score = 29.3 bits (64), Expect = 3.8 Identities = 23/95 (24%), Positives = 35/95 (36%), Gaps = 3/95 (3%) Frame = +2 Query: 98 ITRKQKD*LTHEHLLLLAYMKSVSNESWFYLRPGRMSISSNDAFCSKSALL---SVLIET 268 + R+ D TH H V F G +++ + F + + S T Sbjct: 197 VYRRDNDDATHSHQFTQIEGLVVGENITFADLKGTLTVLAKTMFGEEREIRLRPSFFPFT 256 Query: 269 EPMDLLDMSCWTWGASRCTSMAMASWISLSTSEMV 373 EP +D+SC+ G C WI + S MV Sbjct: 257 EPSVEMDISCFKCGGKGCRVCKGTGWIEILGSGMV 291
>Y1569_ARCFU (O28703) Hypothetical protein AF1569| Length = 259 Score = 28.9 bits (63), Expect = 5.0 Identities = 18/84 (21%), Positives = 36/84 (42%), Gaps = 6/84 (7%) Frame = +2 Query: 122 LTHEHLLLLAYMKSVSNESWFYLRPGRMSISSNDAFCSKSALLSVLIETEPMDLLDMSCW 301 L E++ +++SVSN W++ R +S+ +A E +++ CW Sbjct: 170 LNLEYVTSGKFVRSVSNPQWYFRRVKHFILSAPAMGVGATAGYIAARSAEIESIIETVCW 229 Query: 302 TWGASRCTS------MAMASWISL 355 T+ A + + + SW+ L Sbjct: 230 TFRAFLLLTIVVVCILTLGSWLGL 253
>SIRK_ARATH (O64483) Senescence-induced receptor-like serine/threonine-protein| kinase precursor (FLG22-induced receptor-like kinase 1) Length = 876 Score = 28.9 bits (63), Expect = 5.0 Identities = 10/28 (35%), Positives = 19/28 (67%) Frame = -1 Query: 417 EVGIMCVKPKGAQRPTISEVLKEIQDAI 334 E+ + C + AQRPT+S+V+ E++ + Sbjct: 819 EIALACTEHTSAQRPTMSQVVMELKQIV 846
>CP52J_CANMA (Q12588) Cytochrome P450 52A10 (EC 1.14.14.-) (CYPLIIA10)| (Alkane-inducible P450-ALK7) Length = 519 Score = 28.5 bits (62), Expect = 6.6 Identities = 19/66 (28%), Positives = 34/66 (51%) Frame = +2 Query: 53 IWT*ARASVIHSFQIITRKQKD*LTHEHLLLLAYMKSVSNESWFYLRPGRMSISSNDAFC 232 +W+ R + H F + + + + ++ E L L Y+K+V NE+ L P S+ N F Sbjct: 337 VWSKLRQEIGHKFGLDSYSRVEDISFELLKLCEYLKAVLNET-LRLYP---SVPRNARFA 392 Query: 233 SKSALL 250 +K+ L Sbjct: 393 AKNTTL 398
>VL1_HPV53 (Q05113) Major capsid protein L1| Length = 499 Score = 28.1 bits (61), Expect = 8.6 Identities = 16/51 (31%), Positives = 26/51 (50%) Frame = -1 Query: 339 AIAIEVQREAPQVQQLMSKRSMGSVSINTDNSADLEQNASFDEMLMRPGLR 187 AI + + P+ Q +SK V++ SADL+Q + LM+ G+R Sbjct: 422 AITCQKDQPPPEKQDPLSKYKFWEVNLQNSFSADLDQFPLGRKFLMQVGVR 472
>SYFA_THETN (Q8R9C6) Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase alpha chain) (PheRS) Length = 339 Score = 28.1 bits (61), Expect = 8.6 Identities = 12/36 (33%), Positives = 17/36 (47%) Frame = +2 Query: 266 TEPMDLLDMSCWTWGASRCTSMAMASWISLSTSEMV 373 TEP +D+SC+ G C WI + + MV Sbjct: 253 TEPSAEMDVSCFACGGKGCRVCGYTGWIEILGAGMV 288
>SYFA_SYMTH (Q67QF3) Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase alpha chain) (PheRS) Length = 343 Score = 28.1 bits (61), Expect = 8.6 Identities = 13/36 (36%), Positives = 18/36 (50%) Frame = +2 Query: 266 TEPMDLLDMSCWTWGASRCTSMAMASWISLSTSEMV 373 TEP +D+SC G C + + WI + S MV Sbjct: 257 TEPSAEMDISCIFCGGKGCRTCKGSGWIEIGGSGMV 292 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 51,892,730 Number of Sequences: 219361 Number of extensions: 827589 Number of successful extensions: 2389 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 2367 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2389 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2228238148 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
