>VCAP_HHV6U (P17887) Major capsid protein (MCP)|
          Length = 1345

 Score = 32.0 bits (71), Expect = 0.68
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
 Frame = -3

Query: 412 KNHLTQVL----LL*AAIKMSL*PASFSPSRLTCLIQSRETRCQRYKTVTRIPTIELPS 248
           KN  T+VL    ++   I + L P SF  +R   +++  +T CQ+Y    +I T  L S
Sbjct: 544 KNRATEVLCTPRIMIGNIPLPLAPVSFHEARTNQILEHAKTNCQKYDFTLKIVTESLTS 602

>YEFI_ECOLI (P37751) Hypothetical protein yefI|
          Length = 372

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = -3

Query: 208 ISISLGIEP--FLLYTTCLSLSKNDHRHNVRVFCCFPYL*HLHGLPASLCPVQGRW 47
           IS++ G++   FL Y   L   K DH +N+    CFP      GLP S    +G+W
Sbjct: 247 ISLAEGLDNVHFLGY---LDKEKIDHCYNISDIVCFPSRLETWGLPLSEAKERGKW 299

>COBU_ECOLI (P0AE76) Bifunctional adenosylcobalamin biosynthesis protein cobU|
           [Includes: Adenosylcobinamide kinase (EC 2.7.1.156);
           Adenosylcobinamide-phosphate guanylyltransferase (EC
           2.7.7.62)]
          Length = 181

 Score = 29.3 bits (64), Expect = 4.4
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 96  HRYGKQQNTRTLCRWSFLDKLRHVVYSKN 182
           HR G+ ++ RT+ RW  LD+L H   + N
Sbjct: 47  HRQGRPEHWRTVERWQHLDELIHADINPN 75

>COBU_ECO57 (P0AE77) Bifunctional adenosylcobalamin biosynthesis protein cobU|
           [Includes: Adenosylcobinamide kinase (EC 2.7.1.156);
           Adenosylcobinamide-phosphate guanylyltransferase (EC
           2.7.7.62)]
          Length = 181

 Score = 29.3 bits (64), Expect = 4.4
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 96  HRYGKQQNTRTLCRWSFLDKLRHVVYSKN 182
           HR G+ ++ RT+ RW  LD+L H   + N
Sbjct: 47  HRQGRPEHWRTVERWQHLDELIHADINPN 75

>PROB_SYNP6 (Q5N0T0) Glutamate 5-kinase (EC 2.7.2.11) (Gamma-glutamyl kinase)|
           (GK)
          Length = 370

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +3

Query: 222 KKQGYTFILEGSSIVGIRVTVLYLWHRVSRLCIRQ 326
           ++QGY  +L  S  VG+  T L L  R SR+  RQ
Sbjct: 41  RRQGYNVVLVSSGAVGVGCTRLGLRDRPSRIAQRQ 75

>CX001_HUMAN (O96002) Protein CXorf1|
          Length = 111

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 15/57 (26%), Positives = 31/57 (54%)
 Frame = -1

Query: 264 LLSFLQG*TYTLAFFCPSLSAYPLALSHFCYILHVSVYLRMTIGITFVYSVAFRTYD 94
           +LSF+      L  FC +LSA  L+ + F + + + ++    +   F ++ +F+TY+
Sbjct: 27  ILSFINSLASPLTIFCFALSAQALS-TIFYFRIFIFIFHSWILLFHFYFTCSFKTYE 82

>SMC2_CHICK (Q90988) Structural maintenance of chromosome 2 (Chromosome|
           scaffold protein ScII)
          Length = 1189

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +2

Query: 215 GQKKARVYVYP*RKLNSRNPGHRLVSLASSL 307
           GQ K R  + P  K+++ + GH ++SLA +L
Sbjct: 567 GQLKHRYTIIPLSKISANSIGHEIISLAKNL 597


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,857,582
Number of Sequences: 219361
Number of extensions: 1375131
Number of successful extensions: 3837
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3837
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2570413340
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)