ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl53a04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_450082.1| Oryza sativa (japonica cultivar-group), mRNA 62 2e-06
2gb|DQ167399.1| Oryza sativa (indica cultivar-group) isolate 93-1... 62 2e-06
3gb|DQ167807.1| Oryza sativa (japonica cultivar-group) isolate PA... 62 2e-06
4gb|DQ167400.1| Oryza sativa (japonica cultivar-group) cultivar N... 62 2e-06
5dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 62 2e-06
6dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 62 2e-06
7dbj|AP005744.2| Oryza sativa (japonica cultivar-group) genomic D... 62 2e-06
8dbj|AP005746.3| Oryza sativa (japonica cultivar-group) genomic D... 62 2e-06
9gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 62 2e-06
10emb|AL731738.6|CNS08C7N Oryza sativa chromosome 12, . BAC OSJNBa... 62 2e-06
11dbj|BA000029.3| Oryza sativa (japonica cultivar-group) mitochond... 62 2e-06
12gb|AC148293.6| Medicago truncatula clone mth2-16c13, complete se... 42 1.5
13gb|AC134468.4| Mus musculus BAC clone RP23-97J21 from chromosome... 40 5.9
14gb|AC124084.8| Mus musculus chromosome 15, clone RP24-410P21, co... 40 5.9
15emb|CT009738.8| Mouse DNA sequence from clone RP23-217H9 on chro... 40 5.9
16gb|AC159814.2| Mus musculus BAC clone RP23-389H15 from chromosom... 40 5.9
17gb|AC158935.4| Mus musculus chromosome 3, clone RP24-180K20, com... 40 5.9
18dbj|AK034808.1| Mus musculus 12 days embryo embryonic body betwe... 40 5.9
19gb|AC025271.7|AC025271 Homo sapiens chromosome 15 clone CTD-2515... 40 5.9
20gb|AC157580.5| Mus musculus chromosome 15, clone RP24-82M3, comp... 40 5.9
21gb|AC138112.4| Mus musculus BAC clone RP24-291E8 from 3, complet... 40 5.9 
>ref|XM_450082.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 546

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 62/75 (82%)
 Strand = Plus / Plus

                                                                       
Query: 189 atgccaagggatatgctgataaagatgggcnnnnnnnngcaagggtatacgtttatcctt 248
           ||||| |||||| ||||||||||||||| |        ||||||||||| ||||||||||
Sbjct: 1   atgccgagggatctgctgataaagatggacgaaaaaaggcaagggtatatgtttatcctt 60

                          
Query: 249 gaaggaagctcaata 263
           |||||| ||||||||
Sbjct: 61  gaaggaggctcaata 75
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>gb|DQ167399.1| Oryza sativa (indica cultivar-group) isolate 93-11 mitochondrion,
             complete genome
          Length = 491515

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 62/75 (82%)
 Strand = Plus / Plus

                                                                         
Query: 189   atgccaagggatatgctgataaagatgggcnnnnnnnngcaagggtatacgtttatcctt 248
             ||||| |||||| ||||||||||||||| |        ||||||||||| ||||||||||
Sbjct: 56425 atgccgagggatctgctgataaagatggacgaaaaaaggcaagggtatatgtttatcctt 56484

                            
Query: 249   gaaggaagctcaata 263
             |||||| ||||||||
Sbjct: 56485 gaaggaggctcaata 56499
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>gb|DQ167807.1| Oryza sativa (japonica cultivar-group) isolate PA64S mitochondrion,
             complete genome
          Length = 490673

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 62/75 (82%)
 Strand = Plus / Plus

                                                                         
Query: 189   atgccaagggatatgctgataaagatgggcnnnnnnnngcaagggtatacgtttatcctt 248
             ||||| |||||| ||||||||||||||| |        ||||||||||| ||||||||||
Sbjct: 55930 atgccgagggatctgctgataaagatggacgaaaaaaggcaagggtatatgtttatcctt 55989

                            
Query: 249   gaaggaagctcaata 263
             |||||| ||||||||
Sbjct: 55990 gaaggaggctcaata 56004
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>gb|DQ167400.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare
             mitochondrion, complete genome
          Length = 490669

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 62/75 (82%)
 Strand = Plus / Plus

                                                                         
Query: 189   atgccaagggatatgctgataaagatgggcnnnnnnnngcaagggtatacgtttatcctt 248
             ||||| |||||| ||||||||||||||| |        ||||||||||| ||||||||||
Sbjct: 55930 atgccgagggatctgctgataaagatggacgaaaaaaggcaagggtatatgtttatcctt 55989

                            
Query: 249   gaaggaagctcaata 263
             |||||| ||||||||
Sbjct: 55990 gaaggaggctcaata 56004
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 62/75 (82%)
 Strand = Plus / Minus

                                                                            
Query: 189      atgccaagggatatgctgataaagatgggcnnnnnnnngcaagggtatacgtttatcctt 248
                ||||| |||||| ||||||||||||||| |        ||||||||||| ||||||||||
Sbjct: 20579037 atgccgagggatctgctgataaagatggacgaaaaaaggcaagggtatatgtttatcctt 20578978

                               
Query: 249      gaaggaagctcaata 263
                |||||| ||||||||
Sbjct: 20578977 gaaggaggctcaata 20578963
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 62/75 (82%)
 Strand = Plus / Minus

                                                                           
Query: 189     atgccaagggatatgctgataaagatgggcnnnnnnnngcaagggtatacgtttatcctt 248
               ||||| |||||| ||||||||||||||| |        ||||||||||| ||||||||||
Sbjct: 1477719 atgccgagggatctgctgataaagatggacgaaaaaaggcaagggtatatgtttatcctt 1477660

                              
Query: 249     gaaggaagctcaata 263
               |||||| ||||||||
Sbjct: 1477659 gaaggaggctcaata 1477645
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>dbj|AP005744.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1512_E04
          Length = 157848

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 62/75 (82%)
 Strand = Plus / Minus

                                                                         
Query: 189   atgccaagggatatgctgataaagatgggcnnnnnnnngcaagggtatacgtttatcctt 248
             ||||| |||||| ||||||||||||||| |        ||||||||||| ||||||||||
Sbjct: 95832 atgccgagggatctgctgataaagatggacgaaaaaaggcaagggtatatgtttatcctt 95773

                            
Query: 249   gaaggaagctcaata 263
             |||||| ||||||||
Sbjct: 95772 gaaggaggctcaata 95758
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>dbj|AP005746.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
            clone:OSJNBa0018I03
          Length = 145818

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 62/75 (82%)
 Strand = Plus / Minus

                                                                        
Query: 189  atgccaagggatatgctgataaagatgggcnnnnnnnngcaagggtatacgtttatcctt 248
            ||||| |||||| ||||||||||||||| |        ||||||||||| ||||||||||
Sbjct: 5963 atgccgagggatctgctgataaagatggacgaaaaaaggcaagggtatatgtttatcctt 5904

                           
Query: 249  gaaggaagctcaata 263
            |||||| ||||||||
Sbjct: 5903 gaaggaggctcaata 5889
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 62/75 (82%)
 Strand = Plus / Minus

                                                                            
Query: 189      atgccaagggatatgctgataaagatgggcnnnnnnnngcaagggtatacgtttatcctt 248
                ||||| |||||| ||||||||||||||| |        ||||||||||| ||||||||||
Sbjct: 20505251 atgccgagggatctgctgataaagatggacgaaaaaaggcaagggtatatgtttatcctt 20505192

                               
Query: 249      gaaggaagctcaata 263
                |||||| ||||||||
Sbjct: 20505191 gaaggaggctcaata 20505177
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>emb|AL731738.6|CNS08C7N Oryza sativa chromosome 12, . BAC OSJNBa0005K20 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 143618

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 62/75 (82%)
 Strand = Plus / Plus

                                                                         
Query: 189   atgccaagggatatgctgataaagatgggcnnnnnnnngcaagggtatacgtttatcctt 248
             ||||| |||||| ||||||||||||||| |        ||||||||||| ||||||||||
Sbjct: 14196 atgccgagggatctgctgataaagatggacgaaaaaaggcaagggtatatgtttatcctt 14255

                            
Query: 249   gaaggaagctcaata 263
             |||||| ||||||||
Sbjct: 14256 gaaggaggctcaata 14270
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>dbj|BA000029.3| Oryza sativa (japonica cultivar-group) mitochondrial DNA, complete
             genome
          Length = 490520

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 62/75 (82%)
 Strand = Plus / Plus

                                                                         
Query: 189   atgccaagggatatgctgataaagatgggcnnnnnnnngcaagggtatacgtttatcctt 248
             ||||| |||||| ||||||||||||||| |        ||||||||||| ||||||||||
Sbjct: 55880 atgccgagggatctgctgataaagatggacgaaaaaaggcaagggtatatgtttatcctt 55939

                            
Query: 249   gaaggaagctcaata 263
             |||||| ||||||||
Sbjct: 55940 gaaggaggctcaata 55954
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>gb|AC148293.6| Medicago truncatula clone mth2-16c13, complete sequence
          Length = 117793

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 28/29 (96%), Gaps = 1/29 (3%)
 Strand = Plus / Minus

                                          
Query: 148   tagataaa-ctgagacatgtagtatatag 175
             |||||||| ||||||||||||||||||||
Sbjct: 81015 tagataaagctgagacatgtagtatatag 80987
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>gb|AC134468.4| Mus musculus BAC clone RP23-97J21 from chromosome 12, complete sequence
          Length = 234400

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 393    acctgggtcagatggttttt 412
              ||||||||||||||||||||
Sbjct: 121048 acctgggtcagatggttttt 121067
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>gb|AC124084.8| Mus musculus chromosome 15, clone RP24-410P21, complete sequence
          Length = 183447

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 318    atcagacaagtcagccttgatggg 341
              ||||||||||||||||||| ||||
Sbjct: 121652 atcagacaagtcagccttgttggg 121675
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>emb|CT009738.8| Mouse DNA sequence from clone RP23-217H9 on chromosome 12, complete
              sequence
          Length = 209619

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 380    tcagagcagcaacacctggg 399
              ||||||||||||||||||||
Sbjct: 133612 tcagagcagcaacacctggg 133631
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>gb|AC159814.2| Mus musculus BAC clone RP23-389H15 from chromosome 12, complete sequence
          Length = 209280

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 380    tcagagcagcaacacctggg 399
              ||||||||||||||||||||
Sbjct: 203291 tcagagcagcaacacctggg 203310
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>gb|AC158935.4| Mus musculus chromosome 3, clone RP24-180K20, complete sequence
          Length = 157284

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 21    ctgtataatttttctacaga 40
             ||||||||||||||||||||
Sbjct: 35262 ctgtataatttttctacaga 35243
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>dbj|AK034808.1| Mus musculus 12 days embryo embryonic body between diaphragm region
           and neck cDNA, RIKEN full-length enriched library,
           clone:9430041K17 product:unclassifiable, full insert
           sequence
          Length = 3180

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 380 tcagagcagcaacacctggg 399
           ||||||||||||||||||||
Sbjct: 27  tcagagcagcaacacctggg 46
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>gb|AC025271.7|AC025271 Homo sapiens chromosome 15 clone CTD-2515H24 map 15q21.3, complete
              sequence
          Length = 191330

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 146    cttagataaactgagacatg 165
              ||||||||||||||||||||
Sbjct: 174237 cttagataaactgagacatg 174218
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>gb|AC157580.5| Mus musculus chromosome 15, clone RP24-82M3, complete sequence
          Length = 207974

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 318   atcagacaagtcagccttgatggg 341
             ||||||||||||||||||| ||||
Sbjct: 26010 atcagacaagtcagccttgttggg 25987
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>gb|AC138112.4| Mus musculus BAC clone RP24-291E8 from 3, complete sequence
          Length = 173988

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 151   ataaactgagacatgtagta 170
             ||||||||||||||||||||
Sbjct: 80502 ataaactgagacatgtagta 80521


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,656,134
Number of Sequences: 3902068
Number of extensions: 3656134
Number of successful extensions: 88368
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 88246
Number of HSP's gapped (non-prelim): 122
length of query: 438
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 416
effective length of database: 17,147,199,772
effective search space: 7133235105152
effective search space used: 7133235105152
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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