ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl53a03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YRD3_CAEEL (Q09573) Hypothetical protein K02A2.3 30 1.1
2FNBP2_MOUSE (Q91Z67) SLIT-ROBO Rho GTPase-activating protein 2 (... 29 3.1
3ELO1_YEAST (P39540) Elongation of fatty acids protein 1 29 3.1
4RORG_HUMAN (P51449) Nuclear receptor ROR-gamma (Nuclear receptor... 29 3.1
5KCTD9_HUMAN (Q7L273) Potassium channel tetramerisation domain-co... 28 5.2
6TRPA1_DROME (Q7Z020) Transient receptor potential cation channel... 28 5.2
7TCPE_SCHPO (Q9UTM4) T-complex protein 1 subunit epsilon (TCP-1-e... 28 6.8
8FRI3_SOYBN (Q948P6) Ferritin-3, chloroplast precursor (EC 1.16.3... 28 6.8
9ARK1_SCHPO (O59790) Serine/threonine-protein kinase ark1 (EC 2.7... 27 8.9
10NUHM_ARATH (O22769) NADH-ubiquinone oxidoreductase 24 kDa subuni... 27 8.9
11FNBP2_HUMAN (O75044) SLIT-ROBO Rho GTPase-activating protein 2 (... 27 8.9
12WNT4_DROME (P40589) Protein Wnt-4 precursor (dWnt-4) 27 8.9

>YRD3_CAEEL (Q09573) Hypothetical protein K02A2.3|
          Length = 1020

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -1

Query: 308 YWP*QVSHCSGTKPFRGLRGPVPSLPYGSISGALSCSAIY 189
           Y+P      +GT     LR P  S+P G+I+  L+ SAIY
Sbjct: 386 YFPAVTGIFTGTNMSGDLRDPQRSIPVGTIAATLTTSAIY 425



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>FNBP2_MOUSE (Q91Z67) SLIT-ROBO Rho GTPase-activating protein 2 (srGAP2)|
           (Formin-binding protein 2) (Formin-binding protein 27)
           (FBP 27) (Fragment)
          Length = 405

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 14/53 (26%), Positives = 27/53 (50%)
 Frame = +1

Query: 148 QHDCTTLCKSLLER*MAEHDKAPEMLP*GREGTGPLKPRNGFVPEQCETCHGQ 306
           Q  C +    L++  + +H+    + P  RE  GP+  R G + + C++ HG+
Sbjct: 226 QVSCQSHVNELIKTIIIQHEN---IFPNPRELEGPIYSRGGSMEDYCDSTHGE 275



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>ELO1_YEAST (P39540) Elongation of fatty acids protein 1|
          Length = 310

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = -2

Query: 241 LLFLMVAFQVLYHALPSIFLKETCTM*CNHAVNI*KRLAKCSNRDTRMIFTFVSCF 74
           +L L+V + VLY  + + + K  CT  C   +     +A  +   T  +F F+S +
Sbjct: 236 MLDLIVVYYVLYQKIVAAYFKNACTPQCEDCLGSMTAIAAGAAILTSYLFLFISFY 291



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>RORG_HUMAN (P51449) Nuclear receptor ROR-gamma (Nuclear receptor RZR-gamma)|
          Length = 518

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -1

Query: 230 YGSISGALSCSAIYLSKRDLHNVVQSCC*HLKETCKM 120
           YGS S   +  A Y S  ++ ++VQS C   +ETC++
Sbjct: 251 YGSPSFRSTPEAPYASLTEIEHLVQSVCKSYRETCQL 287



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>KCTD9_HUMAN (Q7L273) Potassium channel tetramerisation domain-containing|
           protein 9
          Length = 389

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +2

Query: 56  HPEMTLKTANKGEDHSCISITTFCKSLLDVNSMIALHCASL 178
           H E+ +K +   EDHS IS   F + LL   +   L C  L
Sbjct: 183 HLEVAIKNSQPPEDHSPISRKEFVRFLLATPTKSELRCQGL 223



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>TRPA1_DROME (Q7Z020) Transient receptor potential cation channel subfamily A|
           member 1 (Ankyrin-like with transmembrane domains
           protein 1) (dANKTM1)
          Length = 1197

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
 Frame = +2

Query: 125 CKSLLDVNSMIALHCASLF*KDRWQSMI----KHLKCYHKEEKGPALLS 259
           C S  DV  M  LHCAS+F      S +      +    KE + P LL+
Sbjct: 329 CLSCTDVQKMTPLHCASMFDHPDIVSYLVAEGADINALDKEHRSPLLLA 377



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>TCPE_SCHPO (Q9UTM4) T-complex protein 1 subunit epsilon (TCP-1-epsilon)|
           (CCT-epsilon)
          Length = 546

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 18/65 (27%), Positives = 30/65 (46%)
 Frame = +2

Query: 128 KSLLDVNSMIALHCASLF*KDRWQSMIKHLKCYHKEEKGPALLSHETALSQNNVRLVTAS 307
           K  LD+ S+        + K+++Q MIKH+K     + G  L+  +         L+  +
Sbjct: 265 KHKLDITSVSEFEALQAYEKEKFQEMIKHVK-----DAGANLVICQWGFDDEANHLLLQN 319

Query: 308 NLNAV 322
           NL AV
Sbjct: 320 NLPAV 324



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>FRI3_SOYBN (Q948P6) Ferritin-3, chloroplast precursor (EC 1.16.3.1) (SFerH-3)|
          Length = 256

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = +2

Query: 185 KDRWQSMIKHLKCYHKEEKGPALLSHETALSQNNVRLVTASNLNAV 322
           K + QS++  L  +  EEKG AL + E ALS   +      NL++V
Sbjct: 152 KVKLQSIVMPLSEFDHEEKGDALYAMELALSLEKLTNEKLLNLHSV 197



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>ARK1_SCHPO (O59790) Serine/threonine-protein kinase ark1 (EC 2.7.11.1)|
           (Aurora-related kinase 1)
          Length = 355

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 9/24 (37%), Positives = 18/24 (75%)
 Frame = -1

Query: 386 KIELKVKSFVPEEYSAMVAKVAQH 315
           K++LK+ SFVP +   +++++ QH
Sbjct: 300 KVDLKIPSFVPPDARDLISRLLQH 323



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>NUHM_ARATH (O22769) NADH-ubiquinone oxidoreductase 24 kDa subunit,|
           mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3)
          Length = 255

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 10/23 (43%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
 Frame = +1

Query: 316 CC--ATLATIAEYSSGTKDFTFN 378
           CC  A + T+A+YS+G++ +T+N
Sbjct: 174 CCVNAPMITVADYSNGSEGYTYN 196



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>FNBP2_HUMAN (O75044) SLIT-ROBO Rho GTPase-activating protein 2 (srGAP2)|
           (Formin-binding protein 2)
          Length = 1071

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = +1

Query: 148 QHDCTTLCKSLLER*MAEHDKAPEMLP*GREGTGPLKPRNGFVPEQCETCHGQ 306
           Q  C      L++  + +H+    + P  RE  GP+  R G + + C++ HG+
Sbjct: 657 QVSCQAHVNELIKTIIIQHEN---IFPSPRELEGPVYSRGGSMEDYCDSPHGE 706



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>WNT4_DROME (P40589) Protein Wnt-4 precursor (dWnt-4)|
          Length = 539

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 12/44 (27%), Positives = 19/44 (43%)
 Frame = +2

Query: 80  ANKGEDHSCISITTFCKSLLDVNSMIALHCASLF*KDRWQSMIK 211
           A + ++H C   T    +L +   +   HC   F  DRW   I+
Sbjct: 245 ATRRQNHQCRKETGLPGTLSEARRLATTHCEEQFRYDRWNCSIE 288


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,787,157
Number of Sequences: 219361
Number of extensions: 983873
Number of successful extensions: 2181
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2181
length of database: 80,573,946
effective HSP length: 110
effective length of database: 56,444,236
effective search space used: 1354661664
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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