Clone Name | rbastl53a03 |
---|---|
Clone Library Name | barley_pub |
>YRD3_CAEEL (Q09573) Hypothetical protein K02A2.3| Length = 1020 Score = 30.4 bits (67), Expect = 1.1 Identities = 16/40 (40%), Positives = 22/40 (55%) Frame = -1 Query: 308 YWP*QVSHCSGTKPFRGLRGPVPSLPYGSISGALSCSAIY 189 Y+P +GT LR P S+P G+I+ L+ SAIY Sbjct: 386 YFPAVTGIFTGTNMSGDLRDPQRSIPVGTIAATLTTSAIY 425
>FNBP2_MOUSE (Q91Z67) SLIT-ROBO Rho GTPase-activating protein 2 (srGAP2)| (Formin-binding protein 2) (Formin-binding protein 27) (FBP 27) (Fragment) Length = 405 Score = 28.9 bits (63), Expect = 3.1 Identities = 14/53 (26%), Positives = 27/53 (50%) Frame = +1 Query: 148 QHDCTTLCKSLLER*MAEHDKAPEMLP*GREGTGPLKPRNGFVPEQCETCHGQ 306 Q C + L++ + +H+ + P RE GP+ R G + + C++ HG+ Sbjct: 226 QVSCQSHVNELIKTIIIQHEN---IFPNPRELEGPIYSRGGSMEDYCDSTHGE 275
>ELO1_YEAST (P39540) Elongation of fatty acids protein 1| Length = 310 Score = 28.9 bits (63), Expect = 3.1 Identities = 15/56 (26%), Positives = 27/56 (48%) Frame = -2 Query: 241 LLFLMVAFQVLYHALPSIFLKETCTM*CNHAVNI*KRLAKCSNRDTRMIFTFVSCF 74 +L L+V + VLY + + + K CT C + +A + T +F F+S + Sbjct: 236 MLDLIVVYYVLYQKIVAAYFKNACTPQCEDCLGSMTAIAAGAAILTSYLFLFISFY 291
>RORG_HUMAN (P51449) Nuclear receptor ROR-gamma (Nuclear receptor RZR-gamma)| Length = 518 Score = 28.9 bits (63), Expect = 3.1 Identities = 14/37 (37%), Positives = 22/37 (59%) Frame = -1 Query: 230 YGSISGALSCSAIYLSKRDLHNVVQSCC*HLKETCKM 120 YGS S + A Y S ++ ++VQS C +ETC++ Sbjct: 251 YGSPSFRSTPEAPYASLTEIEHLVQSVCKSYRETCQL 287
>KCTD9_HUMAN (Q7L273) Potassium channel tetramerisation domain-containing| protein 9 Length = 389 Score = 28.1 bits (61), Expect = 5.2 Identities = 15/41 (36%), Positives = 20/41 (48%) Frame = +2 Query: 56 HPEMTLKTANKGEDHSCISITTFCKSLLDVNSMIALHCASL 178 H E+ +K + EDHS IS F + LL + L C L Sbjct: 183 HLEVAIKNSQPPEDHSPISRKEFVRFLLATPTKSELRCQGL 223
>TRPA1_DROME (Q7Z020) Transient receptor potential cation channel subfamily A| member 1 (Ankyrin-like with transmembrane domains protein 1) (dANKTM1) Length = 1197 Score = 28.1 bits (61), Expect = 5.2 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 4/49 (8%) Frame = +2 Query: 125 CKSLLDVNSMIALHCASLF*KDRWQSMI----KHLKCYHKEEKGPALLS 259 C S DV M LHCAS+F S + + KE + P LL+ Sbjct: 329 CLSCTDVQKMTPLHCASMFDHPDIVSYLVAEGADINALDKEHRSPLLLA 377
>TCPE_SCHPO (Q9UTM4) T-complex protein 1 subunit epsilon (TCP-1-epsilon)| (CCT-epsilon) Length = 546 Score = 27.7 bits (60), Expect = 6.8 Identities = 18/65 (27%), Positives = 30/65 (46%) Frame = +2 Query: 128 KSLLDVNSMIALHCASLF*KDRWQSMIKHLKCYHKEEKGPALLSHETALSQNNVRLVTAS 307 K LD+ S+ + K+++Q MIKH+K + G L+ + L+ + Sbjct: 265 KHKLDITSVSEFEALQAYEKEKFQEMIKHVK-----DAGANLVICQWGFDDEANHLLLQN 319 Query: 308 NLNAV 322 NL AV Sbjct: 320 NLPAV 324
>FRI3_SOYBN (Q948P6) Ferritin-3, chloroplast precursor (EC 1.16.3.1) (SFerH-3)| Length = 256 Score = 27.7 bits (60), Expect = 6.8 Identities = 17/46 (36%), Positives = 25/46 (54%) Frame = +2 Query: 185 KDRWQSMIKHLKCYHKEEKGPALLSHETALSQNNVRLVTASNLNAV 322 K + QS++ L + EEKG AL + E ALS + NL++V Sbjct: 152 KVKLQSIVMPLSEFDHEEKGDALYAMELALSLEKLTNEKLLNLHSV 197
>ARK1_SCHPO (O59790) Serine/threonine-protein kinase ark1 (EC 2.7.11.1)| (Aurora-related kinase 1) Length = 355 Score = 27.3 bits (59), Expect = 8.9 Identities = 9/24 (37%), Positives = 18/24 (75%) Frame = -1 Query: 386 KIELKVKSFVPEEYSAMVAKVAQH 315 K++LK+ SFVP + +++++ QH Sbjct: 300 KVDLKIPSFVPPDARDLISRLLQH 323
>NUHM_ARATH (O22769) NADH-ubiquinone oxidoreductase 24 kDa subunit,| mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3) Length = 255 Score = 27.3 bits (59), Expect = 8.9 Identities = 10/23 (43%), Positives = 18/23 (78%), Gaps = 2/23 (8%) Frame = +1 Query: 316 CC--ATLATIAEYSSGTKDFTFN 378 CC A + T+A+YS+G++ +T+N Sbjct: 174 CCVNAPMITVADYSNGSEGYTYN 196
>FNBP2_HUMAN (O75044) SLIT-ROBO Rho GTPase-activating protein 2 (srGAP2)| (Formin-binding protein 2) Length = 1071 Score = 27.3 bits (59), Expect = 8.9 Identities = 14/53 (26%), Positives = 26/53 (49%) Frame = +1 Query: 148 QHDCTTLCKSLLER*MAEHDKAPEMLP*GREGTGPLKPRNGFVPEQCETCHGQ 306 Q C L++ + +H+ + P RE GP+ R G + + C++ HG+ Sbjct: 657 QVSCQAHVNELIKTIIIQHEN---IFPSPRELEGPVYSRGGSMEDYCDSPHGE 706
>WNT4_DROME (P40589) Protein Wnt-4 precursor (dWnt-4)| Length = 539 Score = 27.3 bits (59), Expect = 8.9 Identities = 12/44 (27%), Positives = 19/44 (43%) Frame = +2 Query: 80 ANKGEDHSCISITTFCKSLLDVNSMIALHCASLF*KDRWQSMIK 211 A + ++H C T +L + + HC F DRW I+ Sbjct: 245 ATRRQNHQCRKETGLPGTLSEARRLATTHCEEQFRYDRWNCSIE 288 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,787,157 Number of Sequences: 219361 Number of extensions: 983873 Number of successful extensions: 2181 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 2127 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2181 length of database: 80,573,946 effective HSP length: 110 effective length of database: 56,444,236 effective search space used: 1354661664 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)