>gb|AY693800.1| Triticum aestivum clone WHE3002_C07_E14 CENP-C mRNA, partial cds
          Length = 1046

 Score =  172 bits (87), Expect = 6e-40
 Identities = 111/119 (93%)
 Strand = Plus / Minus

                                                                       
Query: 4   ataccacaagagacttcctgcatatataaactagagccaattgacatcatatcatccaga 63
           |||| ||||| ||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct: 996 atacgacaagggacttcctgcatatacaaactagagacaattgacatcatatcatccaga 937

                                                                      
Query: 64  gatgacactaaaaacagctaacaaaggtgaagatcattcttgtatctctattactacat 122
           |||||||||||||||||||||||||||||||||| |||||| | |||||| ||||||||
Sbjct: 936 gatgacactaaaaacagctaacaaaggtgaagataattcttctgtctctactactacat 878



 Score =  137 bits (69), Expect = 3e-29
 Identities = 117/133 (87%)
 Strand = Plus / Minus

                                                                       
Query: 272 ttgtcccagaacaatgtgagacttgtcacggccagtaacctcaatgctgtgcgactttag 331
           ||||||| |||||| ||||||||||||  |||||||||||||||| || |||  ||| ||
Sbjct: 746 ttgtcccggaacaaagtgagacttgtccaggccagtaacctcaatactttgcagcttgag 687

                                                                       
Query: 332 ctaccatagctgagtattcttctggcacgaaggatttcactttcaattcaatcttgccgt 391
           |||||||| ||||||| | |||||||||||||||||||||| ||||||||| |||||| |
Sbjct: 686 ctaccatatctgagtactgttctggcacgaaggatttcactctcaattcaaccttgccat 627

                        
Query: 392 cttcactgggaga 404
           ||| |||||||||
Sbjct: 626 cttgactgggaga 614



 Score =  133 bits (67), Expect = 5e-28
 Identities = 79/83 (95%)
 Strand = Plus / Minus

                                                                       
Query: 145 taacagcatgattgcactacattgtgcaagtctcttttagaaagatagatggcagagcat 204
           |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 852 taacagcatggttgcactacattgtgcaaatctcttttagaaagatagatggcagagcat 793

                                  
Query: 205 gataaagcacctgaaatgctacc 227
           || ||||||||||||| ||||||
Sbjct: 792 gagaaagcacctgaaaggctacc 770

>emb|AL583919.1|MLEPRTN3 Mycobacterium leprae strain TN complete genome; segment 3/10
          Length = 312050

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 324    gactttagctaccatagctgag 345
              ||||||||||||||||||||||
Sbjct: 222242 gactttagctaccatagctgag 222221

>gb|AC005090.2| Homo sapiens BAC clone CTA-315L10 from 7, complete sequence
          Length = 116218

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 49     atcatatcatccagagatgac 69
              |||||||||||||||||||||
Sbjct: 109666 atcatatcatccagagatgac 109686

>gb|AC099526.5| Papio anubis clone RP41-308A9, complete sequence
          Length = 143983

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 49     atcatatcatccagagatgac 69
              |||||||||||||||||||||
Sbjct: 110550 atcatatcatccagagatgac 110570

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 178      cttttagaaagatagatggcagagc 202
                |||||||||| ||||||||||||||
Sbjct: 13743176 cttttagaaacatagatggcagagc 13743200

>gb|AC016972.7|AC016972 Arabidopsis thaliana chromosome 1 BAC F23N20 genomic sequence, complete
             sequence
          Length = 66653

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 106   tatctctattactacattttg 126
             |||||||||||||||||||||
Sbjct: 30372 tatctctattactacattttg 30352

>emb|AL935071.4|CNS08CCN Oryza sativa chromosome 12, . BAC OSJNBb0016C24 of library OSJNBb
            from chromosome 12 of cultivar Nipponbare of ssp.
            japonica of Oryza sativa (rice), complete sequence
          Length = 87778

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 178  cttttagaaagatagatggcagagc 202
            |||||||||| ||||||||||||||
Sbjct: 6484 cttttagaaacatagatggcagagc 6508

>emb|AL713910.2|CNS07YQB Oryza sativa chromosome 12, . BAC OSJNBa0042B03 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 145118

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 178   cttttagaaagatagatggcagagc 202
             |||||||||| ||||||||||||||
Sbjct: 76777 cttttagaaacatagatggcagagc 76801

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 178      cttttagaaagatagatggcagagc 202
                |||||||||| ||||||||||||||
Sbjct: 13697456 cttttagaaacatagatggcagagc 13697480

>emb|BX664709.2|CNS09SBZ Oryza sativa chromosome 12, . BAC B1270G11 of chromosome 12 of cultivar
             Nipponbare of ssp. japonica of Oryza sativa (rice),
             complete sequence
          Length = 155451

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 178   cttttagaaagatagatggcagagc 202
             |||||||||| ||||||||||||||
Sbjct: 58835 cttttagaaacatagatggcagagc 58859

>gb|AY693797.1| Saccharum officinarum clone SCEZRZ1015G07 CENP-C1 mRNA, complete cds
          Length = 2402

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 355  ggcacgaaggatttcactttcaat 378
            |||||||| |||||||||||||||
Sbjct: 2179 ggcacgaaagatttcactttcaat 2156

>gb|AY693796.1| Saccharum officinarum clone SCEQRT2025C08 CENP-C2 mRNA, complete cds
          Length = 2848

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 355  ggcacgaaggatttcactttcaat 378
            |||||||| |||||||||||||||
Sbjct: 2228 ggcacgaaagatttcactttcaat 2205

>gb|AY693795.1| Saccharum officinarum clone SCBFAD1047C06 CENP-C1 mRNA, complete cds
          Length = 2413

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 355  ggcacgaaggatttcactttcaat 378
            |||||||| |||||||||||||||
Sbjct: 2176 ggcacgaaagatttcactttcaat 2153

>gb|AY693793.1| Sorghum propinquum clone Gm-c1037-952 CENP-C mRNA, complete cds
          Length = 2566

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 355  ggcacgaaggatttcactttcaat 378
            |||||||| |||||||||||||||
Sbjct: 2319 ggcacgaaagatttcactttcaat 2296

>gb|AY693792.1| Sorghum bicolor clone FE1_7_B02_A002 CENP-C mRNA, complete cds
          Length = 2477

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 355  ggcacgaaggatttcactttcaat 378
            |||||||| |||||||||||||||
Sbjct: 2194 ggcacgaaagatttcactttcaat 2171

>gb|AY693791.1| Sorghum bicolor clone EM1_16_G07_A002 CENP-C pseudogene mRNA,
            complete sequence
          Length = 2357

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 355  ggcacgaaggatttcactttcaat 378
            |||||||| |||||||||||||||
Sbjct: 2102 ggcacgaaagatttcactttcaat 2079

>gb|AY693790.1| Sorghum bicolor clone CCC1_6_F09_A007 CENP-C pseudogene mRNA,
            complete sequence
          Length = 2519

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 355  ggcacgaaggatttcactttcaat 378
            |||||||| |||||||||||||||
Sbjct: 2235 ggcacgaaagatttcactttcaat 2212

>gb|AC158625.9| Mus musculus 6 BAC RP23-78J15 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 246705

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 120    cattttgcaagtctcttttagatg 143
              ||||||||||||||| ||||||||
Sbjct: 207142 cattttgcaagtctcgtttagatg 207165

>gb|AC127559.6| Mus musculus BAC clone RP24-255M7 from chromosome 6, complete sequence
          Length = 158864

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 84    acaaaggtgaagatcattcttgta 107
             ||||||||| ||||||||||||||
Sbjct: 23157 acaaaggtgtagatcattcttgta 23134

>gb|AC158924.6| Mus musculus chromosome 18, clone RP23-109P21, complete sequence
          Length = 254968

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 164    cattgtgcaagtctctttta 183
              ||||||||||||||||||||
Sbjct: 156596 cattgtgcaagtctctttta 156577

>emb|CR626927.1| Bacteroides fragilis NCTC 9343, complete genome
          Length = 5205140

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 359     cgaaggatttcactttcaat 378
               ||||||||||||||||||||
Sbjct: 3774779 cgaaggatttcactttcaat 3774760

>gb|AC092422.3| Homo sapiens chromosome 3 clone RP11-537O8, complete sequence
          Length = 188643

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 188    gatagatggcagagcatgataaag 211
              ||||||||||||| ||||||||||
Sbjct: 104966 gatagatggcagatcatgataaag 104943

>gb|DP000053.1| Oryctolagus cuniculus target 126 genomic scaffold
          Length = 470930

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 103    ttgtatctctattactacat 122
              ||||||||||||||||||||
Sbjct: 233805 ttgtatctctattactacat 233786

>gb|AC128966.4| Rattus norvegicus  BAC CH230-194D11 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 214096

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 16    acttcctgcatatataaact 35
             ||||||||||||||||||||
Sbjct: 70411 acttcctgcatatataaact 70392

>gb|AF129857.2|AF129857 Zea mays CENPCA protein (CenpcA) mRNA, complete cds
          Length = 2238

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 355  ggcacgaaggatttcactttcaat 378
            |||||||| |||||||||||||||
Sbjct: 2063 ggcacgaaagatttcactttcaat 2040

>gb|AC159150.5| Mus musculus  BAC RP23-339M5 (Roswell Park Cancer Institute (C57BL/6J
            Female) Mouse BAC Library) complete sequence
          Length = 205775

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 84   acaaaggtgaagatcattcttgta 107
            ||||||||| ||||||||||||||
Sbjct: 8660 acaaaggtgtagatcattcttgta 8683

>dbj|AP006841.1| Bacteroides fragilis YCH46 DNA, complete genome
          Length = 5277274

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 359     cgaaggatttcactttcaat 378
               ||||||||||||||||||||
Sbjct: 3867965 cgaaggatttcactttcaat 3867946

>gb|AC155944.3| Mus musculus 6 BAC RP24-493P12 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 137474

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 120   cattttgcaagtctcttttagatg 143
             ||||||||||||||| ||||||||
Sbjct: 32300 cattttgcaagtctcgtttagatg 32323

>gb|AE009442.1| Xylella fastidiosa Temecula1, complete genome
          Length = 2519802

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 309    acctcaatgctgtgcgactt 328
              ||||||||||||||||||||
Sbjct: 869559 acctcaatgctgtgcgactt 869578

>gb|AC139294.4| Mus musculus BAC clone RP24-239E14 from 14, complete sequence
          Length = 183363

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 182    tagaaagatagatggcagag 201
              ||||||||||||||||||||
Sbjct: 124380 tagaaagatagatggcagag 124399


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,692,015
Number of Sequences: 3902068
Number of extensions: 3692015
Number of successful extensions: 64428
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 64310
Number of HSP's gapped (non-prelim): 118
length of query: 404
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 382
effective length of database: 17,147,199,772
effective search space: 6550230312904
effective search space used: 6550230312904
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)